NO02G03440.1, NO02G03440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03440.1
Unique NameNO02G03440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1749
Alignment locationchr2:922985..924733 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:922985..924733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03440.1 vs.
Match: XP_005856371.1 (elongator complex protein 3 [Nannochloropsis gaditana CCMP526]; EKU19987.1 elongator complex protein 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1051.2 bits (2717), Expect = 1.200e-303
Identity = 506/584 (86.64%), Postives = 541/584 (92.64%), Query Frame = 0 
Query:    1 MAPHNQEVDQMQSRSSPAYLGCVAELVKELMHAYDARLPTNLTRLTADLARKRKLKAVPRLMDIIAAVPEDYRDKLLPFIKSKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYAQTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLAEDYKDWFIRNLHDALSGHSSGSVAEAVAYMEQSQCKCIGITIETRPDYCLKPHLNEMLTYGCTRIEIGVQSIYEDVARDTNRGHTVHAVCNSFQLAKDCGFKVVTHMMPDLPNMGMERDLAGFQEFFENPLFRADGLKIYPTLVIRGTGLYELWKTGCYKNYNPDELVDLVAKLLALVPPWTRVYRIQRDIPMPLVSAGVENGNLRELALRRMAELDLPCKDVRTREVGIRAIHQSTRPQEVELVRRDYCANGGWETFLSYEDPHQDILIGLLRLRRPSGVSFRPEIKSGQASVVRELHVYGSAVPVHDRDPNKFQHQGYGTLLMEEAERIAWFEHGSEKLVVIAGVGTRHYYRKLGYELDGPYMSKWL--GGNEMGEMEGVQRYVRGKEEGWRDELQGLML 583
            M P++ ++DQ Q+R SPAYL CVAELVKELMHA+DAR+PTNLTRLTADLARKRKLK +PRLMDIIAAVPE+YRDKLLPFIKSKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYAQTRGRVDQLKRLGHSVDKVEFIVMGGTFMSL+EDYKDWFIRNLHDALSGHSSGSVAEAVAYME S+ KCIGITIETRPD+CLKPHLNEML+YGCTRIEIGVQSIYEDVARDTNRGHTVHAVCNSFQLAK+CGFKVVTHMMPDLPNMGMERDL GF+EFFENPLFRADGLKIYPTLVIRGTGLYELWKTG YKNY PDEL+DL+AK+L+LVPPWTR+YRIQRDIPMPLV+AGVENGNLRELALRRMAELDLPC+DVRTREVGIR IHQS RP E+ELVRRDY ANGGWETFLSYEDPHQDILIGLLRLRRPS V+FRPEI +  +SVVRELHVYGSAVP+HDRDPNKFQHQGYG LLMEEAERIA  EHGS K+VVIAGVGTR+YYRKLGYEL+GPYMSK+L  G     E +  + ++ G E    DE  GL L
Sbjct:   13 MPPNHSDIDQAQNRLSPAYLSCVAELVKELMHAFDARVPTNLTRLTADLARKRKLKIMPRLMDIIAAVPEEYRDKLLPFIKSKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYAQTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLSEDYKDWFIRNLHDALSGHSSGSVAEAVAYMEHSESKCIGITIETRPDFCLKPHLNEMLSYGCTRIEIGVQSIYEDVARDTNRGHTVHAVCNSFQLAKECGFKVVTHMMPDLPNMGMERDLLGFREFFENPLFRADGLKIYPTLVIRGTGLYELWKTGQYKNYTPDELIDLMAKILSLVPPWTRIYRIQRDIPMPLVTAGVENGNLRELALRRMAELDLPCRDVRTREVGIRQIHQSARPHEIELVRRDYTANGGWETFLSYEDPHQDILIGLLRLRRPSAVTFRPEILNNFSSVVRELHVYGSAVPLHDRDPNKFQHQGYGRLLMEEAERIAKHEHGSAKIVVIAGVGTRNYYRKLGYELEGPYMSKYLQKGNRPPVEYQAGKMHIDGLE---MDERNGLQL 593
The following BLAST results are available for this feature:
BLAST of NO02G03440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856371.11.200e-30386.64elongator complex protein 3 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03440NO02G03440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03440.1NO02G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03440.1.cds1NO02G03440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03440.1 ID=NO02G03440.1|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
ATGGCGCCTCATAACCAGGAGGTCGACCAGATGCAGAGCCGATCCTCGCC
GGCCTATCTGGGATGCGTGGCGGAGCTGGTCAAGGAACTAATGCACGCCT
ACGATGCCCGCCTCCCCACAAACCTAACGCGCTTGACGGCCGACCTGGCC
CGGAAGCGGAAGCTCAAAGCAGTGCCTCGTTTGATGGACATTATTGCGGC
CGTGCCTGAGGACTACCGAGACAAGCTTTTGCCATTCATCAAGTCCAAGC
CCGTGCGGACAGCCTCAGGCATTGCCGTGGTGGCCGTCATGTGCAAGCCC
CATCGCTGCCCACACATCGCAATGACTGGCAATGTCTGCGTCTACTGCCC
CGGCGGGCCTGACTCGGACTTTGAATATTCCACGCAGGCCTACACGGGAT
ATGAACCCACAAGCATGCGGGCGATTCGGGCGAGGTACCATCCCTACGCG
CAGACGCGCGGGCGTGTAGACCAGTTGAAGCGCTTGGGGCACAGCGTGGA
CAAGGTAGAGTTTATCGTCATGGGTGGGACGTTCATGTCCTTGGCGGAGG
ATTATAAGGACTGGTTTATTCGGAATTTACATGATGCTTTATCGGGACAT
TCGTCTGGGAGTGTGGCGGAGGCTGTGGCTTACATGGAGCAAAGTCAATG
CAAGTGTATCGGGATCACCATAGAGACCCGCCCGGACTACTGCCTCAAGC
CTCACCTGAACGAAATGCTCACCTATGGCTGCACTCGCATCGAGATTGGG
GTCCAAAGTATCTATGAAGACGTGGCGCGGGATACGAATCGAGGGCATAC
TGTGCATGCTGTCTGCAACTCATTCCAGCTTGCAAAGGACTGCGGATTCA
AAGTAGTCACGCACATGATGCCTGACCTCCCAAACATGGGCATGGAACGT
GACTTGGCCGGTTTCCAGGAATTCTTTGAAAATCCCCTTTTTCGGGCTGA
TGGCCTCAAGATCTACCCTACCCTCGTCATTCGTGGTACAGGCCTGTACG
AGCTGTGGAAAACAGGCTGCTACAAAAACTACAACCCTGACGAGCTGGTT
GACCTGGTGGCAAAGCTCCTTGCCCTCGTTCCACCCTGGACCCGCGTTTA
TCGGATTCAACGCGATATTCCGATGCCACTTGTCTCAGCAGGAGTCGAAA
ATGGGAATTTGCGGGAACTCGCGCTTAGACGGATGGCGGAGTTGGACTTG
CCTTGTAAGGACGTGCGAACGCGAGAAGTGGGTATTCGGGCAATTCATCA
GAGCACGCGCCCGCAGGAAGTCGAGTTAGTGCGCAGGGATTATTGTGCGA
ATGGTGGGTGGGAGACATTTTTGAGTTATGAGGATCCCCATCAGGATATT
TTGATTGGGTTGTTGCGGTTGCGGAGACCTAGTGGGGTGTCGTTTCGACC
GGAGATAAAGTCGGGGCAAGCTTCGGTTGTAAGGGAGCTACACGTGTATG
GTTCCGCGGTGCCGGTGCATGATCGGGATCCGAACAAATTCCAGCACCAG
GGGTACGGGACGCTGTTGATGGAGGAGGCCGAGAGAATTGCCTGGTTTGA
GCATGGGTCGGAAAAGTTGGTGGTTATTGCTGGGGTGGGGACGAGGCACT
ATTACCGCAAGTTGGGTTATGAATTGGATGGACCTTACATGAGTAAATGG
TTGGGAGGGAATGAAATGGGAGAGATGGAAGGAGTACAACGTTATGTAAG
GGGGAAGGAGGAAGGCTGGAGGGATGAATTGCAGGGTTTAATGCTATGA
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protein sequence of NO02G03440.1

>NO02G03440.1-protein ID=NO02G03440.1-protein|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MAPHNQEVDQMQSRSSPAYLGCVAELVKELMHAYDARLPTNLTRLTADLA
RKRKLKAVPRLMDIIAAVPEDYRDKLLPFIKSKPVRTASGIAVVAVMCKP
HRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYA
QTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLAEDYKDWFIRNLHDALSGH
SSGSVAEAVAYMEQSQCKCIGITIETRPDYCLKPHLNEMLTYGCTRIEIG
VQSIYEDVARDTNRGHTVHAVCNSFQLAKDCGFKVVTHMMPDLPNMGMER
DLAGFQEFFENPLFRADGLKIYPTLVIRGTGLYELWKTGCYKNYNPDELV
DLVAKLLALVPPWTRVYRIQRDIPMPLVSAGVENGNLRELALRRMAELDL
PCKDVRTREVGIRAIHQSTRPQEVELVRRDYCANGGWETFLSYEDPHQDI
LIGLLRLRRPSGVSFRPEIKSGQASVVRELHVYGSAVPVHDRDPNKFQHQ
GYGTLLMEEAERIAWFEHGSEKLVVIAGVGTRHYYRKLGYELDGPYMSKW
LGGNEMGEMEGVQRYVRGKEEGWRDELQGLML*
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mRNA from alignment at chr2:922985..924733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03440.1 ID=NO02G03440.1|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at chr2:922985..924733+ (Nannochloropsis oceanica)
ATGGCGCCTCATAACCAGGAGGTCGACCAGATGCAGAGCCGATCCTCGCC
GGCCTATCTGGGATGCGTGGCGGAGCTGGTCAAGGAACTAATGCACGCCT
ACGATGCCCGCCTCCCCACAAACCTAACGCGCTTGACGGCCGACCTGGCC
CGGAAGCGGAAGCTCAAAGCAGTGCCTCGTTTGATGGACATTATTGCGGC
CGTGCCTGAGGACTACCGAGACAAGCTTTTGCCATTCATCAAGTCCAAGC
CCGTGCGGACAGCCTCAGGCATTGCCGTGGTGGCCGTCATGTGCAAGCCC
CATCGCTGCCCACACATCGCAATGACTGGCAATGTCTGCGTCTACTGCCC
CGGCGGGCCTGACTCGGACTTTGAATATTCCACGCAGGCCTACACGGGAT
ATGAACCCACAAGCATGCGGGCGATTCGGGCGAGGTACCATCCCTACGCG
CAGACGCGCGGGCGTGTAGACCAGTTGAAGCGCTTGGGGCACAGCGTGGA
CAAGGTAGAGTTTATCGTCATGGGTGGGACGTTCATGTCCTTGGCGGAGG
ATTATAAGGACTGGTTTATTCGGAATTTACATGATGCTTTATCGGGACAT
TCGTCTGGGAGTGTGGCGGAGGCTGTGGCTTACATGGAGCAAAGTCAATG
CAAGTGTATCGGGATCACCATAGAGACCCGCCCGGACTACTGCCTCAAGC
CTCACCTGAACGAAATGCTCACCTATGGCTGCACTCGCATCGAGATTGGG
GTCCAAAGTATCTATGAAGACGTGGCGCGGGATACGAATCGAGGGCATAC
TGTGCATGCTGTCTGCAACTCATTCCAGCTTGCAAAGGACTGCGGATTCA
AAGTAGTCACGCACATGATGCCTGACCTCCCAAACATGGGCATGGAACGT
GACTTGGCCGGTTTCCAGGAATTCTTTGAAAATCCCCTTTTTCGGGCTGA
TGGCCTCAAGATCTACCCTACCCTCGTCATTCGTGGTACAGGCCTGTACG
AGCTGTGGAAAACAGGCTGCTACAAAAACTACAACCCTGACGAGCTGGTT
GACCTGGTGGCAAAGCTCCTTGCCCTCGTTCCACCCTGGACCCGCGTTTA
TCGGATTCAACGCGATATTCCGATGCCACTTGTCTCAGCAGGAGTCGAAA
ATGGGAATTTGCGGGAACTCGCGCTTAGACGGATGGCGGAGTTGGACTTG
CCTTGTAAGGACGTGCGAACGCGAGAAGTGGGTATTCGGGCAATTCATCA
GAGCACGCGCCCGCAGGAAGTCGAGTTAGTGCGCAGGGATTATTGTGCGA
ATGGTGGGTGGGAGACATTTTTGAGTTATGAGGATCCCCATCAGGATATT
TTGATTGGGTTGTTGCGGTTGCGGAGACCTAGTGGGGTGTCGTTTCGACC
GGAGATAAAGTCGGGGCAAGCTTCGGTTGTAAGGGAGCTACACGTGTATG
GTTCCGCGGTGCCGGTGCATGATCGGGATCCGAACAAATTCCAGCACCAG
GGGTACGGGACGCTGTTGATGGAGGAGGCCGAGAGAATTGCCTGGTTTGA
GCATGGGTCGGAAAAGTTGGTGGTTATTGCTGGGGTGGGGACGAGGCACT
ATTACCGCAAGTTGGGTTATGAATTGGATGGACCTTACATGAGTAAATGG
TTGGGAGGGAATGAAATGGGAGAGATGGAAGGAGTACAACGTTATGTAAG
GGGGAAGGAGGAAGGCTGGAGGGATGAATTGCAGGGTTTAATGCTATGA
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Coding sequence (CDS) from alignment at chr2:922985..924733+

>NO02G03440.1 ID=NO02G03440.1|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr2:922985..924733+ (Nannochloropsis oceanica)
ATGGCGCCTCATAACCAGGAGGTCGACCAGATGCAGAGCCGATCCTCGCC
GGCCTATCTGGGATGCGTGGCGGAGCTGGTCAAGGAACTAATGCACGCCT
ACGATGCCCGCCTCCCCACAAACCTAACGCGCTTGACGGCCGACCTGGCC
CGGAAGCGGAAGCTCAAAGCAGTGCCTCGTTTGATGGACATTATTGCGGC
CGTGCCTGAGGACTACCGAGACAAGCTTTTGCCATTCATCAAGTCCAAGC
CCGTGCGGACAGCCTCAGGCATTGCCGTGGTGGCCGTCATGTGCAAGCCC
CATCGCTGCCCACACATCGCAATGACTGGCAATGTCTGCGTCTACTGCCC
CGGCGGGCCTGACTCGGACTTTGAATATTCCACGCAGGCCTACACGGGAT
ATGAACCCACAAGCATGCGGGCGATTCGGGCGAGGTACCATCCCTACGCG
CAGACGCGCGGGCGTGTAGACCAGTTGAAGCGCTTGGGGCACAGCGTGGA
CAAGGTAGAGTTTATCGTCATGGGTGGGACGTTCATGTCCTTGGCGGAGG
ATTATAAGGACTGGTTTATTCGGAATTTACATGATGCTTTATCGGGACAT
TCGTCTGGGAGTGTGGCGGAGGCTGTGGCTTACATGGAGCAAAGTCAATG
CAAGTGTATCGGGATCACCATAGAGACCCGCCCGGACTACTGCCTCAAGC
CTCACCTGAACGAAATGCTCACCTATGGCTGCACTCGCATCGAGATTGGG
GTCCAAAGTATCTATGAAGACGTGGCGCGGGATACGAATCGAGGGCATAC
TGTGCATGCTGTCTGCAACTCATTCCAGCTTGCAAAGGACTGCGGATTCA
AAGTAGTCACGCACATGATGCCTGACCTCCCAAACATGGGCATGGAACGT
GACTTGGCCGGTTTCCAGGAATTCTTTGAAAATCCCCTTTTTCGGGCTGA
TGGCCTCAAGATCTACCCTACCCTCGTCATTCGTGGTACAGGCCTGTACG
AGCTGTGGAAAACAGGCTGCTACAAAAACTACAACCCTGACGAGCTGGTT
GACCTGGTGGCAAAGCTCCTTGCCCTCGTTCCACCCTGGACCCGCGTTTA
TCGGATTCAACGCGATATTCCGATGCCACTTGTCTCAGCAGGAGTCGAAA
ATGGGAATTTGCGGGAACTCGCGCTTAGACGGATGGCGGAGTTGGACTTG
CCTTGTAAGGACGTGCGAACGCGAGAAGTGGGTATTCGGGCAATTCATCA
GAGCACGCGCCCGCAGGAAGTCGAGTTAGTGCGCAGGGATTATTGTGCGA
ATGGTGGGTGGGAGACATTTTTGAGTTATGAGGATCCCCATCAGGATATT
TTGATTGGGTTGTTGCGGTTGCGGAGACCTAGTGGGGTGTCGTTTCGACC
GGAGATAAAGTCGGGGCAAGCTTCGGTTGTAAGGGAGCTACACGTGTATG
GTTCCGCGGTGCCGGTGCATGATCGGGATCCGAACAAATTCCAGCACCAG
GGGTACGGGACGCTGTTGATGGAGGAGGCCGAGAGAATTGCCTGGTTTGA
GCATGGGTCGGAAAAGTTGGTGGTTATTGCTGGGGTGGGGACGAGGCACT
ATTACCGCAAGTTGGGTTATGAATTGGATGGACCTTACATGAGTAAATGG
TTGGGAGGGAATGAAATGGGAGAGATGGAAGGAGTACAACGTTATGTAAG
GGGGAAGGAGGAAGGCTGGAGGGATGAATTGCAGGGTTTAATGCTATGA
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Synonyms
Publications