NO02G03430.1, NO02G03430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03430.1
Unique NameNO02G03430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1689
Alignment locationchr2:920892..922580 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:920892..922580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03430.1 vs.
Match: EWM30263.1 (Protein of unknown function DUF4281 [Nannochloropsis gaditana])

HSP 1 Score: 608.2 bits (1567), Expect = 2.500e-170
Identity = 325/485 (67.01%), Postives = 399/485 (82.27%), Query Frame = 0 
Query:   75 ARTLVLKASLLHEMAQQWPLIMLAADSAT-----LQDQLPSINIEDAKALMDSFPKAPEIPANIIQSLPKLNLP-ELSSQLEGALKAAQDATPGAIDSLKGLAQDLQDTVGKIQQGGSVELPSLSSLPSLPTVDVDSFPLSGEVKAQLGVLKTQVGDAVGSRFSNAGAIIGEQLDKVLTPYQPLIDQTKSQLSDKFSLVSKFTEKATRELSKDAETLSPALQVLRSVGTPRNLFNTENLIVLPFWVSVILTPNNGLVKGLMSSYIPILVAALAYTWSAYLAFQDPAALEGFASISDITGLGKGLGSEAGTATAWAHFIAQDLFVGRWIYLDGLRNGVWTAHSLTLAFLFGPTGILSHLATRSLVKIVRWDVADIMTAGSQSVAPSAAEDMAKAMIKDAEKQSKGALRAADSQADKVLEKAKAEARKIVVEARKQAEGALASEGKILANAEAQAQSILVDAQKKADTIVSKASSAASAAAVASVPS 554
            +R+ VL+ASLLHE+ QQ P I++A D  +     LQD LPS++I+DAKAL+DSF   P+  +NI++SLPKLNLP ++  QL+ ALKAAQ+ATPGA+DS+KG  ++ Q T+ KI+QGGS+ LPSLSS+PS   VDV+S PL  E+K +L  LK+QVG+ VGSR S  G+   E+   VL PYQP ++QTK QL DKFS+VS+F E+AT+ELSKDAETLSPAL+ L++VGTPRNLFN EN+++LPFW SVIL P+N  VK L+SSY+P+LVAALAYTWSAYLAFQDPAALEGFASISD++ L KGLG+EAGTATAWAHFIAQDLFVGRWI+LDG+RNGVWTAHSLTLAFLFGPTGILSHL TRS VKI RWD+ADIMT GS++VAPSAA+DMAK+M+KDAEKQSK  LRAAD QA+K L KA +EARKI+++ARKQAE AL+SE KI+A+AEAQAQ IL +AQ KAD I+ K S  +S  A ++  S
Sbjct:   49 SRSQVLRASLLHELGQQLPFIVVAGDGTSVDLNALQDSLPSVSIDDAKALLDSF-SDPDTRSNIVKSLPKLNLPAKVPLQLQDALKAAQEATPGALDSIKGFTREFQGTLEKIRQGGSLNLPSLSSIPS---VDVESVPLGAEIKTELSALKSQVGEIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQATQELSKDAETLSPALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAVAPSAADDMAKSMVKDAEKQSKSTLRAADRQAEKSLNKANSEARKIIIQARKQAEEALSSENKIIASAEAQAQRILAEAQSKADAIMRKTSPDSSQTASSAESS 529
The following BLAST results are available for this feature:
BLAST of NO02G03430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30263.12.500e-17067.01Protein of unknown function DUF4281 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03430NO02G03430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03430.1NO02G03430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03430.1.cds1NO02G03430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03430.1 ID=NO02G03430.1|Name=NO02G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
ATGTCGAAGATCTCCAGCAGCTCAACAATACTCAAGCCCTTCTCCCTGTT
CACCACTCAAAGGCACGCGAAGCAGGTAACCGTTGTCCACTCCTTGGCAG
CCTCTAGCAGGATGCTTTCGTCTTCTGCTCGAGGCGTCCTCGTCGTCGTC
ATCATTCTGCTGTATTCCAGCGTCCTTGCTTTCGTCGTGCGCCCACCTTT
ACGTCAACCGGGATCGTCTCGGGCTCGGACTCTTGTGTTGAAGGCTTCCT
TGCTGCACGAAATGGCGCAGCAGTGGCCTTTGATCATGCTCGCAGCAGAT
AGCGCCACGTTGCAAGACCAACTTCCCTCCATCAACATTGAGGACGCTAA
GGCGCTTATGGATAGTTTCCCCAAAGCCCCCGAGATCCCGGCCAACATCA
TACAATCGCTGCCCAAATTGAATTTACCAGAACTCTCCTCTCAACTAGAA
GGTGCGCTCAAGGCGGCCCAAGACGCGACGCCCGGAGCCATCGACAGCCT
CAAGGGACTCGCACAAGATCTGCAGGACACGGTCGGAAAAATTCAACAAG
GAGGCTCTGTTGAGTTACCCTCCCTTTCTTCCCTCCCATCTTTGCCAACT
GTAGACGTGGACAGCTTCCCTCTGAGTGGAGAAGTGAAGGCGCAGCTGGG
TGTGCTTAAAACACAAGTCGGCGATGCTGTTGGCTCGAGGTTTTCAAACG
CAGGCGCCATCATAGGGGAGCAGTTGGATAAGGTGCTCACGCCGTACCAA
CCTCTTATTGACCAGACTAAGAGCCAGCTTTCGGACAAATTTTCCCTCGT
CTCCAAGTTCACGGAGAAGGCGACACGAGAGTTAAGTAAAGACGCAGAGA
CCTTATCACCGGCTTTGCAGGTACTTCGATCGGTGGGAACCCCCCGCAAC
CTTTTCAATACCGAGAACTTGATCGTCTTGCCTTTTTGGGTGAGCGTCAT
ATTGACCCCGAACAACGGCCTGGTCAAGGGGCTTATGTCATCCTATATTC
CCATTCTGGTCGCGGCGTTGGCGTATACATGGAGTGCATATTTGGCTTTC
CAGGATCCTGCAGCGTTGGAGGGCTTTGCGTCTATTTCTGATATCACCGG
GTTGGGCAAAGGTTTGGGAAGCGAGGCGGGCACAGCCACGGCATGGGCTC
ACTTCATTGCACAAGATCTGTTTGTGGGCCGGTGGATTTATCTGGATGGT
CTTCGGAATGGTGTATGGACGGCGCATTCCTTGACGCTTGCATTCTTGTT
CGGACCCACAGGTATTTTGTCTCACCTGGCGACAAGATCGTTGGTCAAGA
TCGTCAGGTGGGATGTCGCCGATATCATGACGGCCGGATCTCAATCAGTG
GCACCCTCGGCAGCCGAGGACATGGCAAAAGCCATGATCAAAGATGCCGA
AAAGCAGTCTAAGGGAGCGTTGCGCGCAGCAGACAGTCAGGCGGATAAGG
TGCTGGAAAAAGCCAAAGCAGAAGCCCGCAAGATTGTCGTGGAAGCACGC
AAGCAAGCGGAAGGGGCCTTGGCGAGCGAGGGAAAGATTCTGGCCAATGC
TGAGGCCCAAGCGCAAAGCATTTTGGTTGATGCCCAGAAGAAAGCGGACA
CGATTGTGAGCAAGGCGAGCTCTGCGGCATCAGCAGCAGCGGTGGCATCT
GTCCCCAGCCCGAGACCGACTGTGGGACCGAGCGAGTAG
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protein sequence of NO02G03430.1

>NO02G03430.1-protein ID=NO02G03430.1-protein|Name=NO02G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MSKISSSSTILKPFSLFTTQRHAKQVTVVHSLAASSRMLSSSARGVLVVV
IILLYSSVLAFVVRPPLRQPGSSRARTLVLKASLLHEMAQQWPLIMLAAD
SATLQDQLPSINIEDAKALMDSFPKAPEIPANIIQSLPKLNLPELSSQLE
GALKAAQDATPGAIDSLKGLAQDLQDTVGKIQQGGSVELPSLSSLPSLPT
VDVDSFPLSGEVKAQLGVLKTQVGDAVGSRFSNAGAIIGEQLDKVLTPYQ
PLIDQTKSQLSDKFSLVSKFTEKATRELSKDAETLSPALQVLRSVGTPRN
LFNTENLIVLPFWVSVILTPNNGLVKGLMSSYIPILVAALAYTWSAYLAF
QDPAALEGFASISDITGLGKGLGSEAGTATAWAHFIAQDLFVGRWIYLDG
LRNGVWTAHSLTLAFLFGPTGILSHLATRSLVKIVRWDVADIMTAGSQSV
APSAAEDMAKAMIKDAEKQSKGALRAADSQADKVLEKAKAEARKIVVEAR
KQAEGALASEGKILANAEAQAQSILVDAQKKADTIVSKASSAASAAAVAS
VPSPRPTVGPSE*
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mRNA from alignment at chr2:920892..922580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03430.1 ID=NO02G03430.1|Name=NO02G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at chr2:920892..922580- (Nannochloropsis oceanica)
ATGTCGAAGATCTCCAGCAGCTCAACAATACTCAAGCCCTTCTCCCTGTT
CACCACTCAAAGGCACGCGAAGCAGGTAACCGTTGTCCACTCCTTGGCAG
CCTCTAGCAGGATGCTTTCGTCTTCTGCTCGAGGCGTCCTCGTCGTCGTC
ATCATTCTGCTGTATTCCAGCGTCCTTGCTTTCGTCGTGCGCCCACCTTT
ACGTCAACCGGGATCGTCTCGGGCTCGGACTCTTGTGTTGAAGGCTTCCT
TGCTGCACGAAATGGCGCAGCAGTGGCCTTTGATCATGCTCGCAGCAGAT
AGCGCCACGTTGCAAGACCAACTTCCCTCCATCAACATTGAGGACGCTAA
GGCGCTTATGGATAGTTTCCCCAAAGCCCCCGAGATCCCGGCCAACATCA
TACAATCGCTGCCCAAATTGAATTTACCAGAACTCTCCTCTCAACTAGAA
GGTGCGCTCAAGGCGGCCCAAGACGCGACGCCCGGAGCCATCGACAGCCT
CAAGGGACTCGCACAAGATCTGCAGGACACGGTCGGAAAAATTCAACAAG
GAGGCTCTGTTGAGTTACCCTCCCTTTCTTCCCTCCCATCTTTGCCAACT
GTAGACGTGGACAGCTTCCCTCTGAGTGGAGAAGTGAAGGCGCAGCTGGG
TGTGCTTAAAACACAAGTCGGCGATGCTGTTGGCTCGAGGTTTTCAAACG
CAGGCGCCATCATAGGGGAGCAGTTGGATAAGGTGCTCACGCCGTACCAA
CCTCTTATTGACCAGACTAAGAGCCAGCTTTCGGACAAATTTTCCCTCGT
CTCCAAGTTCACGGAGAAGGCGACACGAGAGTTAAGTAAAGACGCAGAGA
CCTTATCACCGGCTTTGCAGGTACTTCGATCGGTGGGAACCCCCCGCAAC
CTTTTCAATACCGAGAACTTGATCGTCTTGCCTTTTTGGGTGAGCGTCAT
ATTGACCCCGAACAACGGCCTGGTCAAGGGGCTTATGTCATCCTATATTC
CCATTCTGGTCGCGGCGTTGGCGTATACATGGAGTGCATATTTGGCTTTC
CAGGATCCTGCAGCGTTGGAGGGCTTTGCGTCTATTTCTGATATCACCGG
GTTGGGCAAAGGTTTGGGAAGCGAGGCGGGCACAGCCACGGCATGGGCTC
ACTTCATTGCACAAGATCTGTTTGTGGGCCGGTGGATTTATCTGGATGGT
CTTCGGAATGGTGTATGGACGGCGCATTCCTTGACGCTTGCATTCTTGTT
CGGACCCACAGGTATTTTGTCTCACCTGGCGACAAGATCGTTGGTCAAGA
TCGTCAGGTGGGATGTCGCCGATATCATGACGGCCGGATCTCAATCAGTG
GCACCCTCGGCAGCCGAGGACATGGCAAAAGCCATGATCAAAGATGCCGA
AAAGCAGTCTAAGGGAGCGTTGCGCGCAGCAGACAGTCAGGCGGATAAGG
TGCTGGAAAAAGCCAAAGCAGAAGCCCGCAAGATTGTCGTGGAAGCACGC
AAGCAAGCGGAAGGGGCCTTGGCGAGCGAGGGAAAGATTCTGGCCAATGC
TGAGGCCCAAGCGCAAAGCATTTTGGTTGATGCCCAGAAGAAAGCGGACA
CGATTGTGAGCAAGGCGAGCTCTGCGGCATCAGCAGCAGCGGTGGCATCT
GTCCCCAGCCCGAGACCGACTGTGGGACCGAGCGAGTAG
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Coding sequence (CDS) from alignment at chr2:920892..922580-

>NO02G03430.1 ID=NO02G03430.1|Name=NO02G03430.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr2:920892..922580- (Nannochloropsis oceanica)
ATGTCGAAGATCTCCAGCAGCTCAACAATACTCAAGCCCTTCTCCCTGTT
CACCACTCAAAGGCACGCGAAGCAGGTAACCGTTGTCCACTCCTTGGCAG
CCTCTAGCAGGATGCTTTCGTCTTCTGCTCGAGGCGTCCTCGTCGTCGTC
ATCATTCTGCTGTATTCCAGCGTCCTTGCTTTCGTCGTGCGCCCACCTTT
ACGTCAACCGGGATCGTCTCGGGCTCGGACTCTTGTGTTGAAGGCTTCCT
TGCTGCACGAAATGGCGCAGCAGTGGCCTTTGATCATGCTCGCAGCAGAT
AGCGCCACGTTGCAAGACCAACTTCCCTCCATCAACATTGAGGACGCTAA
GGCGCTTATGGATAGTTTCCCCAAAGCCCCCGAGATCCCGGCCAACATCA
TACAATCGCTGCCCAAATTGAATTTACCAGAACTCTCCTCTCAACTAGAA
GGTGCGCTCAAGGCGGCCCAAGACGCGACGCCCGGAGCCATCGACAGCCT
CAAGGGACTCGCACAAGATCTGCAGGACACGGTCGGAAAAATTCAACAAG
GAGGCTCTGTTGAGTTACCCTCCCTTTCTTCCCTCCCATCTTTGCCAACT
GTAGACGTGGACAGCTTCCCTCTGAGTGGAGAAGTGAAGGCGCAGCTGGG
TGTGCTTAAAACACAAGTCGGCGATGCTGTTGGCTCGAGGTTTTCAAACG
CAGGCGCCATCATAGGGGAGCAGTTGGATAAGGTGCTCACGCCGTACCAA
CCTCTTATTGACCAGACTAAGAGCCAGCTTTCGGACAAATTTTCCCTCGT
CTCCAAGTTCACGGAGAAGGCGACACGAGAGTTAAGTAAAGACGCAGAGA
CCTTATCACCGGCTTTGCAGGTACTTCGATCGGTGGGAACCCCCCGCAAC
CTTTTCAATACCGAGAACTTGATCGTCTTGCCTTTTTGGGTGAGCGTCAT
ATTGACCCCGAACAACGGCCTGGTCAAGGGGCTTATGTCATCCTATATTC
CCATTCTGGTCGCGGCGTTGGCGTATACATGGAGTGCATATTTGGCTTTC
CAGGATCCTGCAGCGTTGGAGGGCTTTGCGTCTATTTCTGATATCACCGG
GTTGGGCAAAGGTTTGGGAAGCGAGGCGGGCACAGCCACGGCATGGGCTC
ACTTCATTGCACAAGATCTGTTTGTGGGCCGGTGGATTTATCTGGATGGT
CTTCGGAATGGTGTATGGACGGCGCATTCCTTGACGCTTGCATTCTTGTT
CGGACCCACAGGTATTTTGTCTCACCTGGCGACAAGATCGTTGGTCAAGA
TCGTCAGGTGGGATGTCGCCGATATCATGACGGCCGGATCTCAATCAGTG
GCACCCTCGGCAGCCGAGGACATGGCAAAAGCCATGATCAAAGATGCCGA
AAAGCAGTCTAAGGGAGCGTTGCGCGCAGCAGACAGTCAGGCGGATAAGG
TGCTGGAAAAAGCCAAAGCAGAAGCCCGCAAGATTGTCGTGGAAGCACGC
AAGCAAGCGGAAGGGGCCTTGGCGAGCGAGGGAAAGATTCTGGCCAATGC
TGAGGCCCAAGCGCAAAGCATTTTGGTTGATGCCCAGAAGAAAGCGGACA
CGATTGTGAGCAAGGCGAGCTCTGCGGCATCAGCAGCAGCGGTGGCATCT
GTCCCCAGCCCGAGACCGACTGTGGGACCGAGCGAGTAG
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Synonyms
Publications