NO02G03380.1, NO02G03380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03380.1
Unique NameNO02G03380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length534
Alignment locationchr2:906834..907634 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:906834..907634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03380.1 vs.
Match: EWM30315.1 (hypothetical protein Naga_100003g147 [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61
Identity = 121/170 (71.18%), Postives = 140/170 (82.35%), Query Frame = 0 
Query:    8 LLLNAAHAFFLAPPSKPLQRLYSTAGAMLGSATHPLANRKIQFSDNEDDTDRVTQVQLLADGSMSFISDSTMAVDVKGSWKPAEGGKVSFLVERFYATSAMDSKYSMVRIYEGKITISGKAILGEGKIEQEKYDALFPCGFFSLISVDDGPDDFFEKLGPGHTVMPGVDQ 178
            +LL+   AF + PP + LQ + STA A+LGS THP+ANRKIQFSDNED+TDRVTQV+L  DGS+SFISDST AVDV+GSW+P + GKV FL+ERFY+ S  DSKYSM RIYEG ITISG +I GEG+IE EKY+ LF CGFFSLISVDD PDDFFEKL PGHTVM G+DQ
Sbjct:   13 VLLSRGEAFLVTPPLEKLQHICSTASAILGSTTHPMANRKIQFSDNEDNTDRVTQVELRGDGSVSFISDSTNAVDVQGSWRPGDEGKVGFLLERFYSDSG-DSKYSMTRIYEGTITISGTSIRGEGRIEMEKYNDLFTCGFFSLISVDDDPDDFFEKLKPGHTVMQGIDQ 181
The following BLAST results are available for this feature:
BLAST of NO02G03380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30315.11.100e-6171.18hypothetical protein Naga_100003g147 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03380NO02G03380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03380.1NO02G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03380.1.cds1NO02G03380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03380.1.cds2NO02G03380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03380.1 ID=NO02G03380.1|Name=NO02G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
ATGAAGCTTGTCCTAGTCTCTCTCTTGCTCAATGCTGCACACGCCTTTTT
CTTGGCGCCACCCAGTAAGCCCCTGCAACGCTTGTATTCTACGGCGGGCG
CTATGTTGGGCTCCGCCACTCACCCGCTGGCCAACCGCAAAATCCAGTTC
TCCGACAACGAGGACGACACAGATCGTGTAACCCAAGTCCAACTGCTGGC
GGATGGGAGTATGAGCTTCATATCGGACAGCACCATGGCAGTGGATGTGA
AGGGGAGCTGGAAACCCGCCGAAGGTGGGAAGGTTTCTTTCCTGGTGGAG
CGCTTTTACGCGACCAGTGCGATGGATAGCAAGTACAGCATGGTCCGTAT
ATATGAGGGGAAAATCACCATCTCAGGGAAAGCAATTTTAGGAGAGGGTA
AAATAGAACAAGAAAAATACGATGCCCTTTTCCCGTGCGGCTTCTTTTCC
CTTATTAGCGTGGATGATGGGCCGGATGATTTTTTTGAAAAGTTAGGGCC
GGGGCACACGGTGATGCCGGGCGTGGATCAGTAA
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protein sequence of NO02G03380.1

>NO02G03380.1-protein ID=NO02G03380.1-protein|Name=NO02G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MKLVLVSLLLNAAHAFFLAPPSKPLQRLYSTAGAMLGSATHPLANRKIQF
SDNEDDTDRVTQVQLLADGSMSFISDSTMAVDVKGSWKPAEGGKVSFLVE
RFYATSAMDSKYSMVRIYEGKITISGKAILGEGKIEQEKYDALFPCGFFS
LISVDDGPDDFFEKLGPGHTVMPGVDQ*
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mRNA from alignment at chr2:906834..907634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03380.1 ID=NO02G03380.1|Name=NO02G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at chr2:906834..907634+ (Nannochloropsis oceanica)
ATGAAGCTTGTCCTAGTCTCTCTCTTGCTCAATGCTGCACACGCCTTTTT
CTTGGCGCCACCCAGTAAGCCCCTGCAACGCTTGTATTCTACGGCGGGCG
CTATGTTGGGCTCCGCCACTCACCCGCTGGCCAACCGCAAAATCCAGTTC
TCCGACAACGAGGACGAGTAAGTAATGCCCAATGAAGGGCTCGAGGTGTA
TTGTGGGCGTGCGAAGACAGTAGTTTGCTGGGTAGTTTTTTTGTGAAACG
CCCAGGCCATAGATTTACATCCTTTGGGTCAAGCCATTTCATTTTCTACC
CTCTTCCTGTCTATCATCTCGTATATATACATTTCTCATCACTTTATTCA
ATCGCATTTTCGCCTTTCCATCCCATCCTTCATATTCTCATCTCCTTCAT
TCCTCCCCCCCCCCCCGCATCATCTCACCCACAGCACAGATCGTGTAACC
CAAGTCCAACTGCTGGCGGATGGGAGTATGAGCTTCATATCGGACAGCAC
CATGGCAGTGGATGTGAAGGGGAGCTGGAAACCCGCCGAAGGTGGGAAGG
TTTCTTTCCTGGTGGAGCGCTTTTACGCGACCAGTGCGATGGATAGCAAG
TACAGCATGGTCCGTATATATGAGGGGAAAATCACCATCTCAGGGAAAGC
AATTTTAGGAGAGGGTAAAATAGAACAAGAAAAATACGATGCCCTTTTCC
CGTGCGGCTTCTTTTCCCTTATTAGCGTGGATGATGGGCCGGATGATTTT
TTTGAAAAGTTAGGGCCGGGGCACACGGTGATGCCGGGCGTGGATCAGTA
A
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Coding sequence (CDS) from alignment at chr2:906834..907634+

>NO02G03380.1 ID=NO02G03380.1|Name=NO02G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at chr2:906834..907634+ (Nannochloropsis oceanica)
ATGAAGCTTGTCCTAGTCTCTCTCTTGCTCAATGCTGCACACGCCTTTTT
CTTGGCGCCACCCAGTAAGCCCCTGCAACGCTTGTATTCTACGGCGGGCG
CTATGTTGGGCTCCGCCACTCACCCGCTGGCCAACCGCAAAATCCAGTTC
TCCGACAACGAGGACGACACAGATCGTGTAACCCAAGTCCAACTGCTGGC
GGATGGGAGTATGAGCTTCATATCGGACAGCACCATGGCAGTGGATGTGA
AGGGGAGCTGGAAACCCGCCGAAGGTGGGAAGGTTTCTTTCCTGGTGGAG
CGCTTTTACGCGACCAGTGCGATGGATAGCAAGTACAGCATGGTCCGTAT
ATATGAGGGGAAAATCACCATCTCAGGGAAAGCAATTTTAGGAGAGGGTA
AAATAGAACAAGAAAAATACGATGCCCTTTTCCCGTGCGGCTTCTTTTCC
CTTATTAGCGTGGATGATGGGCCGGATGATTTTTTTGAAAAGTTAGGGCC
GGGGCACACGGTGATGCCGGGCGTGGATCAGTAA
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Synonyms
Publications