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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:880546..883749 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03280.1 vs.
Match: EWM30341.1 (malate synthase a [Nannochloropsis gaditana]) HSP 1 Score: 891.3 bits (2302), Expect = 1.700e-255 Identity = 425/589 (72.16%), Postives = 493/589 (83.70%), Query Frame = 0
Query: 32 GAMARRIQALSRHLQQQQFIQPDEGRKIRLHSFKAGPHLVEYDADSGGLHPSIAQEVLTDGALTFLAQLVHQFQGDVFELHKRRAEVQAQVEAGTYNFDFLPETAHIREGTWEVERIPSVLLDRRVDVGDVSPDDARALVSALNSGAQGIQCDFDDGFCPTWRNVLLGIHNISQASRGALSYPDSATAQAIGIGAVSGVMMLRPRSWCMTEMHLHVNGRAVPGPLVDFGLLIYHCGSELEMRGVGPFFYCSKVENHLEARLWNSIFTWTETRLGLRRNGIKACVLIENITASFQMDEILYELRGHSAGLNCGIWDYSASFIARFAQRSDMVFPDRTKYVNMNCGFMRSYMRLLVDTCHRRGAPATTGMAGLVLDPTWDSHTREAKLKMVRDIKRLEAEEGGADGALVYDLRLRSVVAEVFDDVLGPGRVNQRDRPLDLVPIRPADLLEVPPGGITQEGVRFNVAIGLRFIESWLRGRGSFVYRNAAEDSATAEISRSQIWQWMRHSLRTEDGVTVTMGLVMDCAEQTARELGEEGRAADVPAALVNDRVMAALRIFQVLVSAPSFPRFITTFLYEQALFQEMVLHRSPV 621
G+MA+RIQ +SRHLQQ++ + G RL SF+AGPH++EYDAD GLH SI EVLT+GAL+FLA+LV F DV EL++RRAEVQ ++E GTY F F PETA IR+G W+VE +PSVLLDRRVDVGDV+PDDARALVSALNSGAQG+QCDFDDGFCPTWRNVLLGI N+ AS+G L YPDS A ++ I + + VMMLRPR+WCMTEMH +VNGRA+PGPL+D+GLLIYHCG+ELEMRG GPFFYCSKVEN+LEARLWNSIFTW+E +LGL++N +KACVLIENITASFQMDEILYELR HSAGLNCGIWDYSASFIARFAQRSDM+FPDRTKYV M CGFMR+YMRLLVDTCH+RGA ATTGMAGLVLDP WD TR+AKL+ VR K EAE+GG+DGAL+YDL L+ +VAEVF G GR+NQ +RPL I PADLLEVPPGGIT EGVRFN I +RFI+SWLRGRGSFVYRN+AEDSATAEISRSQIWQW+RH L TE +T+ LVM+ A +TA EL +EGR A +P ALV+DRV +AL ++++LVS P FPRFITTFLYEQALF E RSP+
Sbjct: 5 GSMAQRIQVISRHLQQKKAFEEKNGATRRLTSFEAGPHIIEYDADVDGLHSSIVDEVLTEGALSFLAELVQHFNKDVLELYRRRAEVQTKIETGTYEFGFSPETAQIRKGIWQVEPVPSVLLDRRVDVGDVAPDDARALVSALNSGAQGVQCDFDDGFCPTWRNVLLGIRNVMDASQGVLCYPDSVRAHSVAIVSNAAVMMLRPRAWCMTEMHFYVNGRAIPGPLLDYGLLIYHCGAELEMRGKGPFFYCSKVENYLEARLWNSIFTWSEVKLGLKKNSVKACVLIENITASFQMDEILYELRNHSAGLNCGIWDYSASFIARFAQRSDMIFPDRTKYVTMECGFMRNYMRLLVDTCHKRGAIATTGMAGLVLDPKWDKATRQAKLQEVRLAKHFEAEKGGSDGALIYDLNLKGLVAEVFGG--GLGRLNQLNRPLSSASIGPADLLEVPPGGITLEGVRFNTEIVVRFIDSWLRGRGSFVYRNSAEDSATAEISRSQIWQWVRHGLYTEGKDAITLSLVMEFACETADELAQEGREAQIPPALVDDRVASALSLYRMLVSVPVFPRFITTFLYEQALFHEFARRRSPI 591
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03280.1 ID=NO02G03280.1|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp ATGTGCCGAATCCACCTCCATCCGGCATCGGCCTTCGTCATTCTAGTCGT GACATGGCTTGCGTGCCTCGCAGTCCGCACGCATCACGCCTGTGGCGCCA TGGCGCGGCGAATTCAAGCTTTGTCCCGGCACCTGCAGCAACAGCAATTC ATCCAGCCGGATGAGGGGCGCAAGATCCGTTTGCATTCCTTCAAGGCCGG GCCGCACCTCGTAGAGTATGACGCTGACAGCGGCGGGCTTCACCCTAGCA TCGCTCAAGAGGTGCTTACCGATGGTGCCTTGACCTTCTTGGCCCAGCTC GTCCATCAGTTTCAAGGAGACGTCTTTGAGCTGCACAAGCGGCGAGCAGA GGTGCAGGCGCAAGTGGAGGCTGGCACCTACAACTTCGACTTCCTGCCCG AGACGGCCCACATTCGCGAGGGCACATGGGAGGTGGAGCGCATCCCATCC GTGCTGCTAGACCGGCGCGTGGATGTGGGCGATGTTTCACCTGACGATGC TCGTGCCCTTGTGTCGGCCCTGAATAGCGGTGCTCAAGGCATTCAATGTG ATTTTGATGACGGATTTTGCCCGACCTGGCGCAACGTCCTTCTGGGCATC CATAACATCTCTCAGGCTTCCCGTGGCGCTCTATCCTACCCGGATTCTGC CACGGCGCAAGCAATTGGCATTGGAGCCGTATCAGGCGTGATGATGCTGC GGCCTCGGTCTTGGTGCATGACAGAGATGCACCTACACGTCAATGGACGG GCCGTGCCGGGGCCTTTGGTGGATTTTGGGCTTCTCATATACCACTGTGG CAGCGAGCTGGAGATGCGGGGCGTGGGGCCTTTCTTCTACTGCTCCAAAG TGGAGAACCACCTTGAAGCCCGCCTTTGGAATTCAATCTTCACTTGGACG GAAACAAGACTGGGCTTGAGGAGGAATGGGATAAAGGCTTGCGTGTTGAT CGAGAACATTACGGCCTCCTTCCAGATGGACGAGATCCTGTACGAGCTGC GAGGCCATTCTGCGGGCCTTAACTGCGGAATCTGGGATTACTCGGCTTCC TTCATTGCTCGCTTTGCCCAGCGTAGTGACATGGTGTTTCCCGACCGCAC CAAATACGTTAACATGAACTGTGGCTTCATGCGCTCCTACATGCGCCTCC TCGTCGACACCTGCCACAGGCGCGGCGCGCCGGCCACCACGGGCATGGCT GGCCTGGTCTTAGACCCAACATGGGACTCCCACACACGGGAGGCCAAGCT TAAGATGGTGCGGGATATCAAGCGCTTGGAAGCCGAGGAGGGAGGCGCTG ACGGGGCTCTTGTCTACGACCTCAGGTTGCGGTCCGTGGTGGCGGAGGTG TTCGACGACGTGCTCGGGCCTGGGCGCGTCAACCAGCGGGACCGGCCACT TGACCTCGTGCCTATCCGTCCTGCTGATCTTCTGGAAGTGCCGCCGGGAG GTATCACTCAAGAAGGCGTGCGCTTCAATGTGGCTATTGGACTGCGCTTT ATTGAGTCTTGGCTTCGCGGCCGGGGCTCGTTTGTGTACAGAAACGCCGC CGAGGATTCTGCCACAGCAGAAATTTCTCGGTCTCAGATTTGGCAGTGGA TGCGCCATAGCCTGCGCACAGAAGACGGTGTGACAGTGACAATGGGGTTG GTCATGGACTGTGCTGAGCAAACTGCTCGGGAATTAGGGGAGGAGGGACG AGCGGCCGATGTGCCTGCAGCGCTTGTGAACGACCGCGTGATGGCGGCCC TTCGAATTTTCCAGGTGCTTGTCTCGGCGCCCAGCTTTCCTCGCTTCATC ACCACATTCTTATACGAGCAAGCGTTGTTTCAAGAGATGGTTCTGCACCG CTCGCCCGTTCAGTAA back to topprotein sequence of NO02G03280.1 >NO02G03280.1-protein ID=NO02G03280.1-protein|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp MCRIHLHPASAFVILVVTWLACLAVRTHHACGAMARRIQALSRHLQQQQF IQPDEGRKIRLHSFKAGPHLVEYDADSGGLHPSIAQEVLTDGALTFLAQL VHQFQGDVFELHKRRAEVQAQVEAGTYNFDFLPETAHIREGTWEVERIPS VLLDRRVDVGDVSPDDARALVSALNSGAQGIQCDFDDGFCPTWRNVLLGI HNISQASRGALSYPDSATAQAIGIGAVSGVMMLRPRSWCMTEMHLHVNGR AVPGPLVDFGLLIYHCGSELEMRGVGPFFYCSKVENHLEARLWNSIFTWT ETRLGLRRNGIKACVLIENITASFQMDEILYELRGHSAGLNCGIWDYSAS FIARFAQRSDMVFPDRTKYVNMNCGFMRSYMRLLVDTCHRRGAPATTGMA GLVLDPTWDSHTREAKLKMVRDIKRLEAEEGGADGALVYDLRLRSVVAEV FDDVLGPGRVNQRDRPLDLVPIRPADLLEVPPGGITQEGVRFNVAIGLRF IESWLRGRGSFVYRNAAEDSATAEISRSQIWQWMRHSLRTEDGVTVTMGL VMDCAEQTARELGEEGRAADVPAALVNDRVMAALRIFQVLVSAPSFPRFI TTFLYEQALFQEMVLHRSPVQ* back to topmRNA from alignment at chr2:880546..883749- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03280.1 ID=NO02G03280.1|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3204bp|location=Sequence derived from alignment at chr2:880546..883749- (Nannochloropsis oceanica) ATGTGCCGAATCCACCTCCATCCGGCATCGGCCTTCGTCATTCTAGTCGT
GACATGGTAAGGGACTTATTGAAACAAACTCAAGTGTATTGTTGTTGTTG
TGCCCTCGTATGCCCATCTTTGTTCGTATGCCCAATCCATGACGGCATCG
GCCGTAATCATTCTCCACGCGCGCATTTCTGCCTGGAAATCTCGTTGCAC
AGCCAGGCGGAGACGGGCCCGTACGTACACAGTCAATGTGCTGCTACGAC
ACTTGGTGCGCCTTAGTGCCAGTGCCCTCGCCCGAGATATATAGCAAACT
TTGAAAGTCGAGCCGATGAACCCAACCTCCTCACTCCCGCCCACGCCCAA
CACAACAGGCTTGCGTGCCTCGCAGTCCGCACGCATCACGCCTGTGGCGC
CATGGCGCGGCGAATTCAAGCTTTGTCCCGGCACCTGCAGCAACAGCAAT
TCATCCAGCCGGATGAGGGGCGCAAGATCCGTTTGCATTCCTTCAAGGCC
GGGCCGCACCTCGTGAGTAATTGATTGTGACACACTCCGGTGAGCTTGAC
CAACCGGGCATTGTAGCAATACGAGTTATAGCAAGAACGAACTAAGGGGT
TGGATGGTTGAAGGATATTGCAATGAGTCAGTGCTTACCGTCCGTACAGG
CTGTGAGAATGAGGGTTACCTGTTTCGCCCTCCTTTCTCATTCCTTTTTG
AATGAGACATCCCCGCTTGCTTAGCTGAAACGACCTTACTTGTCATTCCT
CAGATATCGGTTGCTTACATGTCTCATTCAGAAATCAATCCTGCTTGACC
ACATGAATTTGAAGGTAGAGTATGACGCTGACAGCGGCGGGCTTCACCCT
AGCATCGCTCAAGAGGTGCTTACCGATGGTGCCTTGACCTTCTTGGCCCA
GCTCGTCCATCAGTTTCAAGGAGACGTCTTTGAGGTAAGCTGAAGCCGAA
TTAAGTAAGAAAGCTTCTTTTTGGTGTTTATCAAGCTCTCGTGATGGACT
GAGCTCAATAAAGCACTCCTTATACTGGGGGGGTTCTTCAAGGAGATTTG
ACGCTGTCCGTCTACAATCTCGTTCGAAAGGCTCGCCAGCTCACGATTCC
CTCATTCCCCCCCATCGTCCATTCTTCATGCACACAACATGTATCAGCTG
CACAAGCGGCGAGCAGAGGTGCAGGCGCAAGTGGAGGCTGGCACCTACAA
CTTCGACTTCCTGCCCGAGACGGCCCACATTCGCGAGGTAAGATTGACAT
GCCAGTTTAATTGCCCTCTAGCTCGAACAAGGCGCGCGTTTGAATGGATC
GGCCCATATTGATCATTGACAATTGAAACACACTAATTCCACTGACGCAC
TTTCCCGCATCGAACCCGCGTCGAACCAACCGCAGGGCACATGGGAGGTG
GAGCGCATCCCATCCGTGCTGCTAGACCGGCGCGTGGATGTGGGCGATGT
TTCACCTGACGATGCTCGTGCCCTTGTGTCGGCCCTGAATAGCGGTGCTC
AAGGCATTCAATGTGATTTTGATGACGGATTTTGCCCGACCTGGCGCAAC
GTCCTTCTGGGCATCCATAACATCTCTCAGGCTTCCCGTGGCGCTCTATC
CTACCCGGATTCTGCCACGGCGCAAGCAATTGGCATTGGAGCCGTATCAG
GCGTGATGATGCTGCGGCCTCGGTCTTGGTGCATGACAGAGATGCACCTA
CACGTCAATGGACGGGCCGTGCCGGGGCCTTTGGTGGATTTTGGGTAGGT
GGATTCGTGTGATGAGTGGAATCGTGTGATGGGTTGAGGGGGCGTGTGGG
GGCTGGAGGACCAGGGAAAATGGTAACCGGCCTGCAGACCGTTGAAAGAG
TTTTATTTTTTGCCAGTTCCACTAGCTCAATCAAGATCTACATTTTTATC
CTCTCACATCTTCCGTCCTTTGCTTTTTAGGCTTCTCATATACCACTGTG
GCAGCGAGCTGGAGATGCGGGGCGTGGGGCCTTTCTTCTACTGCTCCAAA
GTGGAGAACCACCTTGAAGCCCGCCTTTGGAATTCAATCTTCACTTGGAC
GGAAACAAGACTGGGCTTGAGGAGGGTACGTGTGTGGGCAGCGTCGATGG
AGGCATGTCACCTTTCATCTCATGGTAAATGACTTCTCTATGTCCTCTAC
GTCCTATTTGGACAGAGAGCGGCATATCCTGCCCTAGTTTCTCGTCCTTC
CTGGCCTTTTGCCTGACTATCTATACCCTTCTGTTAATTCGTACCCTTCC
CTTCGGGCTCAGAATGGGATAAAGGCTTGCGTGTTGATCGAGAACATTAC
GGCCTCCTTCCAGATGGACGAGATCCTGTACGAGCTGCGAGGCCATTCTG
CGGGCCTTAACTGCGGAATCTGGGATTACTCGGCTTCCTTCATTGCTCGC
TTTGCCCAGCGTAGTGACATGGTGTTTCCCGACCGCACCAAATACGTTAA
CATGAACTGTGGCTTCATGCGCTCCTACATGCGCCTCCTCGTCGACACCT
GCCACAGGCGCGGCGCGCCGGCCACCACGGGCATGGCTGGCCTGGTCTTA
GACCCAACATGGGACTCCCACACACGGGAGGCCAAGCTTAAGATGGTGCG
GGATATCAAGCGCTTGGAAGCCGAGGAGGGAGGCGCTGACGGGGCTCTTG
TCTACGACCTCAGGTTGCGGTCCGTGGTGGCGGAGGTGTTCGACGACGTG
CTCGGGCCTGGGCGCGTCAACCAGCGGGACCGGCCACTTGACCTCGTGCC
TATCCGTCCTGCTGATCTTCTGGAAGTGCCGCCGGGAGGTATCACTCAAG
AAGGCGTGCGCTTCAATGTGGCTATTGGACTGCGCTTTATTGAGTCTTGG
CTTCGCGGCCGGGGCTCGTTTGTGTACAGAAACGCCGCCGAGGATTCTGC
CACAGCAGAAATTTCTCGGTCTCAGATTTGGCAGTGGATGCGCCATAGCC
TGCGCACAGAAGACGGTGTGACAGTGACAATGGGGTTGGTCATGGACTGT
GCTGAGCAAACTGCTCGGGAATTAGGGGAGGAGGGACGAGCGGCCGATGT
GCCTGCAGCGCTTGTGAACGACCGCGTGATGGCGGCCCTTCGAATTTTCC
AGGTGCTTGTCTCGGCGCCCAGCTTTCCTCGCTTCATCACCACATTCTTA
TACGAGCAAGCGTTGTTTCAAGAGATGGTTCTGCACCGCTCGCCCGTTCA
GTAA back to topCoding sequence (CDS) from alignment at chr2:880546..883749- >NO02G03280.1 ID=NO02G03280.1|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1866bp|location=Sequence derived from alignment at chr2:880546..883749- (Nannochloropsis oceanica) ATGTGCCGAATCCACCTCCATCCGGCATCGGCCTTCGTCATTCTAGTCGT GACATGGCTTGCGTGCCTCGCAGTCCGCACGCATCACGCCTGTGGCGCCA TGGCGCGGCGAATTCAAGCTTTGTCCCGGCACCTGCAGCAACAGCAATTC ATCCAGCCGGATGAGGGGCGCAAGATCCGTTTGCATTCCTTCAAGGCCGG GCCGCACCTCGTAGAGTATGACGCTGACAGCGGCGGGCTTCACCCTAGCA TCGCTCAAGAGGTGCTTACCGATGGTGCCTTGACCTTCTTGGCCCAGCTC GTCCATCAGTTTCAAGGAGACGTCTTTGAGCTGCACAAGCGGCGAGCAGA GGTGCAGGCGCAAGTGGAGGCTGGCACCTACAACTTCGACTTCCTGCCCG AGACGGCCCACATTCGCGAGGGCACATGGGAGGTGGAGCGCATCCCATCC GTGCTGCTAGACCGGCGCGTGGATGTGGGCGATGTTTCACCTGACGATGC TCGTGCCCTTGTGTCGGCCCTGAATAGCGGTGCTCAAGGCATTCAATGTG ATTTTGATGACGGATTTTGCCCGACCTGGCGCAACGTCCTTCTGGGCATC CATAACATCTCTCAGGCTTCCCGTGGCGCTCTATCCTACCCGGATTCTGC CACGGCGCAAGCAATTGGCATTGGAGCCGTATCAGGCGTGATGATGCTGC GGCCTCGGTCTTGGTGCATGACAGAGATGCACCTACACGTCAATGGACGG GCCGTGCCGGGGCCTTTGGTGGATTTTGGGCTTCTCATATACCACTGTGG CAGCGAGCTGGAGATGCGGGGCGTGGGGCCTTTCTTCTACTGCTCCAAAG TGGAGAACCACCTTGAAGCCCGCCTTTGGAATTCAATCTTCACTTGGACG GAAACAAGACTGGGCTTGAGGAGGAATGGGATAAAGGCTTGCGTGTTGAT CGAGAACATTACGGCCTCCTTCCAGATGGACGAGATCCTGTACGAGCTGC GAGGCCATTCTGCGGGCCTTAACTGCGGAATCTGGGATTACTCGGCTTCC TTCATTGCTCGCTTTGCCCAGCGTAGTGACATGGTGTTTCCCGACCGCAC CAAATACGTTAACATGAACTGTGGCTTCATGCGCTCCTACATGCGCCTCC TCGTCGACACCTGCCACAGGCGCGGCGCGCCGGCCACCACGGGCATGGCT GGCCTGGTCTTAGACCCAACATGGGACTCCCACACACGGGAGGCCAAGCT TAAGATGGTGCGGGATATCAAGCGCTTGGAAGCCGAGGAGGGAGGCGCTG ACGGGGCTCTTGTCTACGACCTCAGGTTGCGGTCCGTGGTGGCGGAGGTG TTCGACGACGTGCTCGGGCCTGGGCGCGTCAACCAGCGGGACCGGCCACT TGACCTCGTGCCTATCCGTCCTGCTGATCTTCTGGAAGTGCCGCCGGGAG GTATCACTCAAGAAGGCGTGCGCTTCAATGTGGCTATTGGACTGCGCTTT ATTGAGTCTTGGCTTCGCGGCCGGGGCTCGTTTGTGTACAGAAACGCCGC CGAGGATTCTGCCACAGCAGAAATTTCTCGGTCTCAGATTTGGCAGTGGA TGCGCCATAGCCTGCGCACAGAAGACGGTGTGACAGTGACAATGGGGTTG GTCATGGACTGTGCTGAGCAAACTGCTCGGGAATTAGGGGAGGAGGGACG AGCGGCCGATGTGCCTGCAGCGCTTGTGAACGACCGCGTGATGGCGGCCC TTCGAATTTTCCAGGTGCTTGTCTCGGCGCCCAGCTTTCCTCGCTTCATC ACCACATTCTTATACGAGCAAGCGTTGTTTCAAGAGATGGTTCTGCACCG CTCGCCCGTTCAGTAA back to top
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