NO02G03280.1, NO02G03280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03280.1
Unique NameNO02G03280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1866
Alignment locationchr2:880546..883749 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:880546..883749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G03280.1 vs.
Match: EWM30341.1 (malate synthase a [Nannochloropsis gaditana])

HSP 1 Score: 891.3 bits (2302), Expect = 1.700e-255
Identity = 425/589 (72.16%), Postives = 493/589 (83.70%), Query Frame = 0
Query:   32 GAMARRIQALSRHLQQQQFIQPDEGRKIRLHSFKAGPHLVEYDADSGGLHPSIAQEVLTDGALTFLAQLVHQFQGDVFELHKRRAEVQAQVEAGTYNFDFLPETAHIREGTWEVERIPSVLLDRRVDVGDVSPDDARALVSALNSGAQGIQCDFDDGFCPTWRNVLLGIHNISQASRGALSYPDSATAQAIGIGAVSGVMMLRPRSWCMTEMHLHVNGRAVPGPLVDFGLLIYHCGSELEMRGVGPFFYCSKVENHLEARLWNSIFTWTETRLGLRRNGIKACVLIENITASFQMDEILYELRGHSAGLNCGIWDYSASFIARFAQRSDMVFPDRTKYVNMNCGFMRSYMRLLVDTCHRRGAPATTGMAGLVLDPTWDSHTREAKLKMVRDIKRLEAEEGGADGALVYDLRLRSVVAEVFDDVLGPGRVNQRDRPLDLVPIRPADLLEVPPGGITQEGVRFNVAIGLRFIESWLRGRGSFVYRNAAEDSATAEISRSQIWQWMRHSLRTEDGVTVTMGLVMDCAEQTARELGEEGRAADVPAALVNDRVMAALRIFQVLVSAPSFPRFITTFLYEQALFQEMVLHRSPV 621
            G+MA+RIQ +SRHLQQ++  +   G   RL SF+AGPH++EYDAD  GLH SI  EVLT+GAL+FLA+LV  F  DV EL++RRAEVQ ++E GTY F F PETA IR+G W+VE +PSVLLDRRVDVGDV+PDDARALVSALNSGAQG+QCDFDDGFCPTWRNVLLGI N+  AS+G L YPDS  A ++ I + + VMMLRPR+WCMTEMH +VNGRA+PGPL+D+GLLIYHCG+ELEMRG GPFFYCSKVEN+LEARLWNSIFTW+E +LGL++N +KACVLIENITASFQMDEILYELR HSAGLNCGIWDYSASFIARFAQRSDM+FPDRTKYV M CGFMR+YMRLLVDTCH+RGA ATTGMAGLVLDP WD  TR+AKL+ VR  K  EAE+GG+DGAL+YDL L+ +VAEVF    G GR+NQ +RPL    I PADLLEVPPGGIT EGVRFN  I +RFI+SWLRGRGSFVYRN+AEDSATAEISRSQIWQW+RH L TE    +T+ LVM+ A +TA EL +EGR A +P ALV+DRV +AL ++++LVS P FPRFITTFLYEQALF E    RSP+
Sbjct:    5 GSMAQRIQVISRHLQQKKAFEEKNGATRRLTSFEAGPHIIEYDADVDGLHSSIVDEVLTEGALSFLAELVQHFNKDVLELYRRRAEVQTKIETGTYEFGFSPETAQIRKGIWQVEPVPSVLLDRRVDVGDVAPDDARALVSALNSGAQGVQCDFDDGFCPTWRNVLLGIRNVMDASQGVLCYPDSVRAHSVAIVSNAAVMMLRPRAWCMTEMHFYVNGRAIPGPLLDYGLLIYHCGAELEMRGKGPFFYCSKVENYLEARLWNSIFTWSEVKLGLKKNSVKACVLIENITASFQMDEILYELRNHSAGLNCGIWDYSASFIARFAQRSDMIFPDRTKYVTMECGFMRNYMRLLVDTCHKRGAIATTGMAGLVLDPKWDKATRQAKLQEVRLAKHFEAEKGGSDGALIYDLNLKGLVAEVFGG--GLGRLNQLNRPLSSASIGPADLLEVPPGGITLEGVRFNTEIVVRFIDSWLRGRGSFVYRNSAEDSATAEISRSQIWQWVRHGLYTEGKDAITLSLVMEFACETADELAQEGREAQIPPALVDDRVASALSLYRMLVSVPVFPRFITTFLYEQALFHEFARRRSPI 591          
The following BLAST results are available for this feature:
BLAST of NO02G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30341.11.700e-25572.16malate synthase a [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03280NO02G03280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03280.1NO02G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03280.1.cds1NO02G03280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03280.1.cds2NO02G03280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03280.1.cds3NO02G03280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03280.1.cds4NO02G03280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03280.1.cds5NO02G03280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03280.1.cds6NO02G03280.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03280.1.cds7NO02G03280.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03280.1 ID=NO02G03280.1|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp
ATGTGCCGAATCCACCTCCATCCGGCATCGGCCTTCGTCATTCTAGTCGT
GACATGGCTTGCGTGCCTCGCAGTCCGCACGCATCACGCCTGTGGCGCCA
TGGCGCGGCGAATTCAAGCTTTGTCCCGGCACCTGCAGCAACAGCAATTC
ATCCAGCCGGATGAGGGGCGCAAGATCCGTTTGCATTCCTTCAAGGCCGG
GCCGCACCTCGTAGAGTATGACGCTGACAGCGGCGGGCTTCACCCTAGCA
TCGCTCAAGAGGTGCTTACCGATGGTGCCTTGACCTTCTTGGCCCAGCTC
GTCCATCAGTTTCAAGGAGACGTCTTTGAGCTGCACAAGCGGCGAGCAGA
GGTGCAGGCGCAAGTGGAGGCTGGCACCTACAACTTCGACTTCCTGCCCG
AGACGGCCCACATTCGCGAGGGCACATGGGAGGTGGAGCGCATCCCATCC
GTGCTGCTAGACCGGCGCGTGGATGTGGGCGATGTTTCACCTGACGATGC
TCGTGCCCTTGTGTCGGCCCTGAATAGCGGTGCTCAAGGCATTCAATGTG
ATTTTGATGACGGATTTTGCCCGACCTGGCGCAACGTCCTTCTGGGCATC
CATAACATCTCTCAGGCTTCCCGTGGCGCTCTATCCTACCCGGATTCTGC
CACGGCGCAAGCAATTGGCATTGGAGCCGTATCAGGCGTGATGATGCTGC
GGCCTCGGTCTTGGTGCATGACAGAGATGCACCTACACGTCAATGGACGG
GCCGTGCCGGGGCCTTTGGTGGATTTTGGGCTTCTCATATACCACTGTGG
CAGCGAGCTGGAGATGCGGGGCGTGGGGCCTTTCTTCTACTGCTCCAAAG
TGGAGAACCACCTTGAAGCCCGCCTTTGGAATTCAATCTTCACTTGGACG
GAAACAAGACTGGGCTTGAGGAGGAATGGGATAAAGGCTTGCGTGTTGAT
CGAGAACATTACGGCCTCCTTCCAGATGGACGAGATCCTGTACGAGCTGC
GAGGCCATTCTGCGGGCCTTAACTGCGGAATCTGGGATTACTCGGCTTCC
TTCATTGCTCGCTTTGCCCAGCGTAGTGACATGGTGTTTCCCGACCGCAC
CAAATACGTTAACATGAACTGTGGCTTCATGCGCTCCTACATGCGCCTCC
TCGTCGACACCTGCCACAGGCGCGGCGCGCCGGCCACCACGGGCATGGCT
GGCCTGGTCTTAGACCCAACATGGGACTCCCACACACGGGAGGCCAAGCT
TAAGATGGTGCGGGATATCAAGCGCTTGGAAGCCGAGGAGGGAGGCGCTG
ACGGGGCTCTTGTCTACGACCTCAGGTTGCGGTCCGTGGTGGCGGAGGTG
TTCGACGACGTGCTCGGGCCTGGGCGCGTCAACCAGCGGGACCGGCCACT
TGACCTCGTGCCTATCCGTCCTGCTGATCTTCTGGAAGTGCCGCCGGGAG
GTATCACTCAAGAAGGCGTGCGCTTCAATGTGGCTATTGGACTGCGCTTT
ATTGAGTCTTGGCTTCGCGGCCGGGGCTCGTTTGTGTACAGAAACGCCGC
CGAGGATTCTGCCACAGCAGAAATTTCTCGGTCTCAGATTTGGCAGTGGA
TGCGCCATAGCCTGCGCACAGAAGACGGTGTGACAGTGACAATGGGGTTG
GTCATGGACTGTGCTGAGCAAACTGCTCGGGAATTAGGGGAGGAGGGACG
AGCGGCCGATGTGCCTGCAGCGCTTGTGAACGACCGCGTGATGGCGGCCC
TTCGAATTTTCCAGGTGCTTGTCTCGGCGCCCAGCTTTCCTCGCTTCATC
ACCACATTCTTATACGAGCAAGCGTTGTTTCAAGAGATGGTTCTGCACCG
CTCGCCCGTTCAGTAA
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protein sequence of NO02G03280.1

>NO02G03280.1-protein ID=NO02G03280.1-protein|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MCRIHLHPASAFVILVVTWLACLAVRTHHACGAMARRIQALSRHLQQQQF
IQPDEGRKIRLHSFKAGPHLVEYDADSGGLHPSIAQEVLTDGALTFLAQL
VHQFQGDVFELHKRRAEVQAQVEAGTYNFDFLPETAHIREGTWEVERIPS
VLLDRRVDVGDVSPDDARALVSALNSGAQGIQCDFDDGFCPTWRNVLLGI
HNISQASRGALSYPDSATAQAIGIGAVSGVMMLRPRSWCMTEMHLHVNGR
AVPGPLVDFGLLIYHCGSELEMRGVGPFFYCSKVENHLEARLWNSIFTWT
ETRLGLRRNGIKACVLIENITASFQMDEILYELRGHSAGLNCGIWDYSAS
FIARFAQRSDMVFPDRTKYVNMNCGFMRSYMRLLVDTCHRRGAPATTGMA
GLVLDPTWDSHTREAKLKMVRDIKRLEAEEGGADGALVYDLRLRSVVAEV
FDDVLGPGRVNQRDRPLDLVPIRPADLLEVPPGGITQEGVRFNVAIGLRF
IESWLRGRGSFVYRNAAEDSATAEISRSQIWQWMRHSLRTEDGVTVTMGL
VMDCAEQTARELGEEGRAADVPAALVNDRVMAALRIFQVLVSAPSFPRFI
TTFLYEQALFQEMVLHRSPVQ*
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mRNA from alignment at chr2:880546..883749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03280.1 ID=NO02G03280.1|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3204bp|location=Sequence derived from alignment at chr2:880546..883749- (Nannochloropsis oceanica)
ATGTGCCGAATCCACCTCCATCCGGCATCGGCCTTCGTCATTCTAGTCGT GACATGGTAAGGGACTTATTGAAACAAACTCAAGTGTATTGTTGTTGTTG TGCCCTCGTATGCCCATCTTTGTTCGTATGCCCAATCCATGACGGCATCG GCCGTAATCATTCTCCACGCGCGCATTTCTGCCTGGAAATCTCGTTGCAC AGCCAGGCGGAGACGGGCCCGTACGTACACAGTCAATGTGCTGCTACGAC ACTTGGTGCGCCTTAGTGCCAGTGCCCTCGCCCGAGATATATAGCAAACT TTGAAAGTCGAGCCGATGAACCCAACCTCCTCACTCCCGCCCACGCCCAA CACAACAGGCTTGCGTGCCTCGCAGTCCGCACGCATCACGCCTGTGGCGC CATGGCGCGGCGAATTCAAGCTTTGTCCCGGCACCTGCAGCAACAGCAAT TCATCCAGCCGGATGAGGGGCGCAAGATCCGTTTGCATTCCTTCAAGGCC GGGCCGCACCTCGTGAGTAATTGATTGTGACACACTCCGGTGAGCTTGAC CAACCGGGCATTGTAGCAATACGAGTTATAGCAAGAACGAACTAAGGGGT TGGATGGTTGAAGGATATTGCAATGAGTCAGTGCTTACCGTCCGTACAGG CTGTGAGAATGAGGGTTACCTGTTTCGCCCTCCTTTCTCATTCCTTTTTG AATGAGACATCCCCGCTTGCTTAGCTGAAACGACCTTACTTGTCATTCCT CAGATATCGGTTGCTTACATGTCTCATTCAGAAATCAATCCTGCTTGACC ACATGAATTTGAAGGTAGAGTATGACGCTGACAGCGGCGGGCTTCACCCT AGCATCGCTCAAGAGGTGCTTACCGATGGTGCCTTGACCTTCTTGGCCCA GCTCGTCCATCAGTTTCAAGGAGACGTCTTTGAGGTAAGCTGAAGCCGAA TTAAGTAAGAAAGCTTCTTTTTGGTGTTTATCAAGCTCTCGTGATGGACT GAGCTCAATAAAGCACTCCTTATACTGGGGGGGTTCTTCAAGGAGATTTG ACGCTGTCCGTCTACAATCTCGTTCGAAAGGCTCGCCAGCTCACGATTCC CTCATTCCCCCCCATCGTCCATTCTTCATGCACACAACATGTATCAGCTG CACAAGCGGCGAGCAGAGGTGCAGGCGCAAGTGGAGGCTGGCACCTACAA CTTCGACTTCCTGCCCGAGACGGCCCACATTCGCGAGGTAAGATTGACAT GCCAGTTTAATTGCCCTCTAGCTCGAACAAGGCGCGCGTTTGAATGGATC GGCCCATATTGATCATTGACAATTGAAACACACTAATTCCACTGACGCAC TTTCCCGCATCGAACCCGCGTCGAACCAACCGCAGGGCACATGGGAGGTG GAGCGCATCCCATCCGTGCTGCTAGACCGGCGCGTGGATGTGGGCGATGT TTCACCTGACGATGCTCGTGCCCTTGTGTCGGCCCTGAATAGCGGTGCTC AAGGCATTCAATGTGATTTTGATGACGGATTTTGCCCGACCTGGCGCAAC GTCCTTCTGGGCATCCATAACATCTCTCAGGCTTCCCGTGGCGCTCTATC CTACCCGGATTCTGCCACGGCGCAAGCAATTGGCATTGGAGCCGTATCAG GCGTGATGATGCTGCGGCCTCGGTCTTGGTGCATGACAGAGATGCACCTA CACGTCAATGGACGGGCCGTGCCGGGGCCTTTGGTGGATTTTGGGTAGGT GGATTCGTGTGATGAGTGGAATCGTGTGATGGGTTGAGGGGGCGTGTGGG GGCTGGAGGACCAGGGAAAATGGTAACCGGCCTGCAGACCGTTGAAAGAG TTTTATTTTTTGCCAGTTCCACTAGCTCAATCAAGATCTACATTTTTATC CTCTCACATCTTCCGTCCTTTGCTTTTTAGGCTTCTCATATACCACTGTG GCAGCGAGCTGGAGATGCGGGGCGTGGGGCCTTTCTTCTACTGCTCCAAA GTGGAGAACCACCTTGAAGCCCGCCTTTGGAATTCAATCTTCACTTGGAC GGAAACAAGACTGGGCTTGAGGAGGGTACGTGTGTGGGCAGCGTCGATGG AGGCATGTCACCTTTCATCTCATGGTAAATGACTTCTCTATGTCCTCTAC GTCCTATTTGGACAGAGAGCGGCATATCCTGCCCTAGTTTCTCGTCCTTC CTGGCCTTTTGCCTGACTATCTATACCCTTCTGTTAATTCGTACCCTTCC CTTCGGGCTCAGAATGGGATAAAGGCTTGCGTGTTGATCGAGAACATTAC GGCCTCCTTCCAGATGGACGAGATCCTGTACGAGCTGCGAGGCCATTCTG CGGGCCTTAACTGCGGAATCTGGGATTACTCGGCTTCCTTCATTGCTCGC TTTGCCCAGCGTAGTGACATGGTGTTTCCCGACCGCACCAAATACGTTAA CATGAACTGTGGCTTCATGCGCTCCTACATGCGCCTCCTCGTCGACACCT GCCACAGGCGCGGCGCGCCGGCCACCACGGGCATGGCTGGCCTGGTCTTA GACCCAACATGGGACTCCCACACACGGGAGGCCAAGCTTAAGATGGTGCG GGATATCAAGCGCTTGGAAGCCGAGGAGGGAGGCGCTGACGGGGCTCTTG TCTACGACCTCAGGTTGCGGTCCGTGGTGGCGGAGGTGTTCGACGACGTG CTCGGGCCTGGGCGCGTCAACCAGCGGGACCGGCCACTTGACCTCGTGCC TATCCGTCCTGCTGATCTTCTGGAAGTGCCGCCGGGAGGTATCACTCAAG AAGGCGTGCGCTTCAATGTGGCTATTGGACTGCGCTTTATTGAGTCTTGG CTTCGCGGCCGGGGCTCGTTTGTGTACAGAAACGCCGCCGAGGATTCTGC CACAGCAGAAATTTCTCGGTCTCAGATTTGGCAGTGGATGCGCCATAGCC TGCGCACAGAAGACGGTGTGACAGTGACAATGGGGTTGGTCATGGACTGT GCTGAGCAAACTGCTCGGGAATTAGGGGAGGAGGGACGAGCGGCCGATGT GCCTGCAGCGCTTGTGAACGACCGCGTGATGGCGGCCCTTCGAATTTTCC AGGTGCTTGTCTCGGCGCCCAGCTTTCCTCGCTTCATCACCACATTCTTA TACGAGCAAGCGTTGTTTCAAGAGATGGTTCTGCACCGCTCGCCCGTTCA GTAA
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Coding sequence (CDS) from alignment at chr2:880546..883749-

>NO02G03280.1 ID=NO02G03280.1|Name=NO02G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1866bp|location=Sequence derived from alignment at chr2:880546..883749- (Nannochloropsis oceanica)
ATGTGCCGAATCCACCTCCATCCGGCATCGGCCTTCGTCATTCTAGTCGT
GACATGGCTTGCGTGCCTCGCAGTCCGCACGCATCACGCCTGTGGCGCCA
TGGCGCGGCGAATTCAAGCTTTGTCCCGGCACCTGCAGCAACAGCAATTC
ATCCAGCCGGATGAGGGGCGCAAGATCCGTTTGCATTCCTTCAAGGCCGG
GCCGCACCTCGTAGAGTATGACGCTGACAGCGGCGGGCTTCACCCTAGCA
TCGCTCAAGAGGTGCTTACCGATGGTGCCTTGACCTTCTTGGCCCAGCTC
GTCCATCAGTTTCAAGGAGACGTCTTTGAGCTGCACAAGCGGCGAGCAGA
GGTGCAGGCGCAAGTGGAGGCTGGCACCTACAACTTCGACTTCCTGCCCG
AGACGGCCCACATTCGCGAGGGCACATGGGAGGTGGAGCGCATCCCATCC
GTGCTGCTAGACCGGCGCGTGGATGTGGGCGATGTTTCACCTGACGATGC
TCGTGCCCTTGTGTCGGCCCTGAATAGCGGTGCTCAAGGCATTCAATGTG
ATTTTGATGACGGATTTTGCCCGACCTGGCGCAACGTCCTTCTGGGCATC
CATAACATCTCTCAGGCTTCCCGTGGCGCTCTATCCTACCCGGATTCTGC
CACGGCGCAAGCAATTGGCATTGGAGCCGTATCAGGCGTGATGATGCTGC
GGCCTCGGTCTTGGTGCATGACAGAGATGCACCTACACGTCAATGGACGG
GCCGTGCCGGGGCCTTTGGTGGATTTTGGGCTTCTCATATACCACTGTGG
CAGCGAGCTGGAGATGCGGGGCGTGGGGCCTTTCTTCTACTGCTCCAAAG
TGGAGAACCACCTTGAAGCCCGCCTTTGGAATTCAATCTTCACTTGGACG
GAAACAAGACTGGGCTTGAGGAGGAATGGGATAAAGGCTTGCGTGTTGAT
CGAGAACATTACGGCCTCCTTCCAGATGGACGAGATCCTGTACGAGCTGC
GAGGCCATTCTGCGGGCCTTAACTGCGGAATCTGGGATTACTCGGCTTCC
TTCATTGCTCGCTTTGCCCAGCGTAGTGACATGGTGTTTCCCGACCGCAC
CAAATACGTTAACATGAACTGTGGCTTCATGCGCTCCTACATGCGCCTCC
TCGTCGACACCTGCCACAGGCGCGGCGCGCCGGCCACCACGGGCATGGCT
GGCCTGGTCTTAGACCCAACATGGGACTCCCACACACGGGAGGCCAAGCT
TAAGATGGTGCGGGATATCAAGCGCTTGGAAGCCGAGGAGGGAGGCGCTG
ACGGGGCTCTTGTCTACGACCTCAGGTTGCGGTCCGTGGTGGCGGAGGTG
TTCGACGACGTGCTCGGGCCTGGGCGCGTCAACCAGCGGGACCGGCCACT
TGACCTCGTGCCTATCCGTCCTGCTGATCTTCTGGAAGTGCCGCCGGGAG
GTATCACTCAAGAAGGCGTGCGCTTCAATGTGGCTATTGGACTGCGCTTT
ATTGAGTCTTGGCTTCGCGGCCGGGGCTCGTTTGTGTACAGAAACGCCGC
CGAGGATTCTGCCACAGCAGAAATTTCTCGGTCTCAGATTTGGCAGTGGA
TGCGCCATAGCCTGCGCACAGAAGACGGTGTGACAGTGACAATGGGGTTG
GTCATGGACTGTGCTGAGCAAACTGCTCGGGAATTAGGGGAGGAGGGACG
AGCGGCCGATGTGCCTGCAGCGCTTGTGAACGACCGCGTGATGGCGGCCC
TTCGAATTTTCCAGGTGCTTGTCTCGGCGCCCAGCTTTCCTCGCTTCATC
ACCACATTCTTATACGAGCAAGCGTTGTTTCAAGAGATGGTTCTGCACCG
CTCGCCCGTTCAGTAA
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Synonyms
Publications