NO02G03190.2, NO02G03190.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03190.2
Unique NameNO02G03190.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1326
Alignment locationchr2:857605..859568 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:857605..859568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03190.2 vs.
Match: EWM30290.1 (Nucleoside phosphorylase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 409.8 bits (1052), Expect = 5.400e-111
Identity = 201/227 (88.55%), Postives = 213/227 (93.83%), Query Frame = 0 
Query:    1 MPLITHLGLTQQSNYFGHAAPFHCFNGKYKGYKLAIVTNGKDRKFGCDNVGTVPAALATYLAVESLKPDLLINAGTAGGFESKGMTIGDVLISSTIHNHDRRMILPIFVDYGVHNHTAVETPRLREALKFKLGVVTTGNSLDHVEADDALMAANDASVKDMEAAAVAWAAELYAVPYFALKVVTDIVDGKHATEDEFVANFSMAQKQLQKSVPAALDFILGKRLADL 228
            MPLIT LGLTQQSNYFGHAAPFHCF G Y  Y LAIVTNGKDRKFGCDNVGTVPAALATYLAVE LKPDLLINAGTAGGFESKGM IGDVLISSTIHNHDRRM+LPIFVDYGVHNH AVETPRLREALKFKLGVV+TGNSLDHVEADDALMAANDASVKDMEAAAVAWAAELY+VPYFALKVVTDIVDG HATE+EFVANF+MAQ++LQ++VPA LD +LG+ L +L
Sbjct:   44 MPLITKLGLTQQSNYFGHAAPFHCFTGTYNNYNLAIVTNGKDRKFGCDNVGTVPAALATYLAVEQLKPDLLINAGTAGGFESKGMAIGDVLISSTIHNHDRRMLLPIFVDYGVHNHKAVETPRLREALKFKLGVVSTGNSLDHVEADDALMAANDASVKDMEAAAVAWAAELYSVPYFALKVVTDIVDGAHATEEEFVANFAMAQRRLQEAVPATLDHVLGRSLEEL 270
The following BLAST results are available for this feature:
BLAST of NO02G03190.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30290.15.400e-11188.55Nucleoside phosphorylase domain protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03190NO02G03190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03190.2NO02G03190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03190.2.cds1NO02G03190.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03190.2.cds2NO02G03190.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03190.2.cds3NO02G03190.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03190.2.cds4NO02G03190.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03190.2.cds5NO02G03190.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03190.2 ID=NO02G03190.2|Name=NO02G03190.2|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp
CACACAGACACAAGCTACACCAGCGCTACAAGCAGGGCATGGAGGGGATC
AAGTCCGTCGTCATTATTATCGCCATGGAAGGATATGATTCTCCACAGGT
AAAGTGTTGAGCTTTTTCGCCATGCGTTATAACAACCCGTCCGCGACGGG
TACACTTAAAATACACAAGACAAGACAAGGTTCCAAATTGTGATGGTCGA
GGACGGCCATATGTGCTCCAGGGCCCAGGGCCCCCAAAAGCATCGTGAAA
GTATATGTGAACGAGATCTGCGCGCCCTGCCCAGGGGGGGCTGGTGATGC
TCTGCTCTAAACAGTGTCGGCATGCTTTGACATGCGCCATAAAATTACCC
CCGCGGAGGGTGCATTCAAAAGAATTAAGTCAAGCCAAGACAAGAGAGGC
CCAAACCCATGACCGATACAGTGTATGCGTATATAAATATGGCAGTGAGA
GCTTTTGGGTTGATATGCGCAACGTCATGGCACCGTATATCTGATTTCAG
ACTGCGCCTTCACATACACACATACATTCAGCCGAAGCCATGCCTCTCAT
CACGCACCTAGGCCTAACCCAGCAGTCCAATTACTTTGGACATGCGGCAC
CTTTCCACTGCTTCAATGGCAAGTACAAGGGATATAAGCTGGCCATTGTT
ACTAATGGGAAGGATCGCAAGTTTGGCTGTGACAATGTCGGCACGGTCCC
CGCAGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGAAGCCAGACTTGC
TCATCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAAGGCATGACAATC
GGCGATGTACTAATTAGCAGCACAATCCATAACCACGATCGGCGCATGAT
TTTGCCCATATTTGTCGATTACGGCGTGCACAATCATACGGCGGTTGAGA
CTCCCCGCCTGCGCGAGGCATTGAAGTTCAAGCTGGGTGTGGTGACCACT
GGCAACTCTTTGGACCACGTCGAGGCCGATGACGCTCTAATGGCAGCCAA
TGATGCCTCCGTGAAGGACATGGAGGCGGCGGCAGTGGCTTGGGCCGCAG
AGCTGTATGCAGTGCCCTACTTTGCTCTTAAGGTTGTGACAGACATTGTG
GATGGGAAGCACGCCACCGAGGATGAGTTTGTGGCTAACTTTAGCATGGC
TCAAAAGCAGCTACAGAAATCCGTCCCCGCAGCTCTCGATTTTATTTTGG
GCAAACGACTGGCGGACTTATGAGTAAGAGCATGCCTATGGGCTCTCGAA
ACATATTGGTTACACTGATTGATGGCATGCGCTCGCAACAACAAAGAAAG
CAAATATGTCAATCAACAATAGAAGA
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protein sequence of NO02G03190.2

>NO02G03190.2-protein ID=NO02G03190.2-protein|Name=NO02G03190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MPLITHLGLTQQSNYFGHAAPFHCFNGKYKGYKLAIVTNGKDRKFGCDNV
GTVPAALATYLAVESLKPDLLINAGTAGGFESKGMTIGDVLISSTIHNHD
RRMILPIFVDYGVHNHTAVETPRLREALKFKLGVVTTGNSLDHVEADDAL
MAANDASVKDMEAAAVAWAAELYAVPYFALKVVTDIVDGKHATEDEFVAN
FSMAQKQLQKSVPAALDFILGKRLADL*
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mRNA from alignment at chr2:857605..859568+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03190.2 ID=NO02G03190.2|Name=NO02G03190.2|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at chr2:857605..859568+ (Nannochloropsis oceanica)
CACACAGACACAAGCTACACCAGCGCTACAAGCAGGGCATGGAGGGGATC
AAGTCCGTCGTCATTATTATCGCCATGGAAGGTAAATTTGTGAGAGGGAG
ATGTTGGTCTCGGGGAGAGGGTGGGGAGGTCGGACCGTCCGTCTACACGA
CAAACCTGGATCAAGTGTATAAGACCTGATCATCCTGTCCGTGAGGATAT
GATTCTCCACAGGTAAAGTGTTGAGCTTTTTCGCCATGCGTTATAACAAC
CCGTCCGCGACGGGTACACTTAAAATACACAAGACAAGACAAGGTTCCAA
ATTGTGATGGTCGAGGACGGCCATATGTGCTCCAGGGCCCAGGGCCCCCA
AAAGCATCGTGAAAGTATATGTGAACGAGATCTGCGCGCCCTGCCCAGGG
GGGGCTGGTGATGCTCTGCTCTAAACAGTGTCGGCATGCTTTGACATGCG
CCATAAAATTACCCCCGCGGAGGGTGCATTCAAAAGAATTAAGTCAAGCC
AAGACAAGAGAGGCCCAAACCCATGACCGATACAGTGTATGCGTATATAA
ATATGGCAGTGAGAGCTTTTGGGTTGATATGCGCAACGTCATGGCACCGT
ATATCTGATTTCAGACTGCGCCTTCACATACACACATACATTCAGCCGAA
GCCATGCCTCTCATCACGCACCTAGGCCTAACCCAGCAGTCCAATTACTT
TGGACATGCGGCACCTTTCCACTGCTTCAATGGCAAGTACAAGGGATATA
AGCTGGCCATTGTTACTAATGGGAAGGATCGCAAGTTTGGCTGTGACAAT
GTAAGATAAGGTTCCTCCCTTTTTGCCTCTCCTCTGCTTATGCCCACTAC
ACCTTCTCGCGCAAAATGCGCCAAGCTCTTTGGTAGGCTTCAGCCAGGGT
AGAGTTAACTGGCTCTCTCGTGGCCCTTATTAATCATGCATAGGTCGGCA
CGGTCCCCGCAGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGAAGCCA
GACTTGCTCATCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAAGGCAT
GACAATCGGCGATGTACTAATTAGCAGCACAATCCATAACCACGATCGGC
GCATGATTTTGCCCATATTTGTCGATTACGGCGTGCACAATCATACGGCG
GTTGAGACTCCCCGCCTGCGCGAGGTAACTATAAGAAGTCGTGGGTCGCA
TGCAATTACCCGCACACACATAGTGACGGGATACCAAGCTTGCTACGCAC
AATAAGATACTGATATTTTTCTCCGCTGTTTTCCCCCATTAATCAGGCAT
TGAAGTTCAAGCTGGGTGTGGTGACCACTGGCAACTCTTTGGACCACGTC
GAGGCCGATGACGCTCTAATGGCAGCCAATGGTGCGTAACTGATGCTTTT
AGATAATGACTATGAAGCACCATTTTTTTTGCTCGCTATCGCTATACGTA
ACCCGCACCTCTCAAATTATCATTACTCAGATGCCTCCGTGAAGGACATG
GAGGCGGCGGCAGTGGCTTGGGCCGCAGAGCTGTATGCAGTGCCCTACTT
TGCTCTTAAGGTTGTGACAGACATTGGTAGGTACACCTTCTCATAGAAGA
AGAGCGGAAATTTCTAAATCCCACCAATTATTAGACTATGAAGTAGGATG
TTTCATTGTCTTGCTGACAACGTCTCCACTCATTCTCTCCCTTGCGCTCT
CCGTCATATATTCAACTTGTCCTGACTATCTTACAGTGGATGGGAAGCAC
GCCACCGAGGATGAGTTTGTGGCTAACTTTAGCATGGCTCAAAAGCAGCT
ACAGAAATCCGTCCCCGCAGCTCTCGATTTTATTTTGGGCAAACGACTGG
CGGACTTATGAGTAAGAGCATGCCTATGGGCTCTCGAAACATATTGGTTA
CACTGATTGATGGCATGCGCTCGCAACAACAAAGAAAGCAAATATGTCAA
TCAACAATAGAAGA
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Coding sequence (CDS) from alignment at chr2:857605..859568+

>NO02G03190.2 ID=NO02G03190.2|Name=NO02G03190.2|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr2:857605..859568+ (Nannochloropsis oceanica)
ATGCCTCTCATCACGCACCTAGGCCTAACCCAGCAGTCCAATTACTTTGG
ACATGCGGCACCTTTCCACTGCTTCAATGGCAAGTACAAGGGATATAAGC
TGGCCATTGTTACTAATGGGAAGGATCGCAAGTTTGGCTGTGACAATGTC
GGCACGGTCCCCGCAGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGAA
GCCAGACTTGCTCATCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAAG
GCATGACAATCGGCGATGTACTAATTAGCAGCACAATCCATAACCACGAT
CGGCGCATGATTTTGCCCATATTTGTCGATTACGGCGTGCACAATCATAC
GGCGGTTGAGACTCCCCGCCTGCGCGAGGCATTGAAGTTCAAGCTGGGTG
TGGTGACCACTGGCAACTCTTTGGACCACGTCGAGGCCGATGACGCTCTA
ATGGCAGCCAATGATGCCTCCGTGAAGGACATGGAGGCGGCGGCAGTGGC
TTGGGCCGCAGAGCTGTATGCAGTGCCCTACTTTGCTCTTAAGGTTGTGA
CAGACATTGTGGATGGGAAGCACGCCACCGAGGATGAGTTTGTGGCTAAC
TTTAGCATGGCTCAAAAGCAGCTACAGAAATCCGTCCCCGCAGCTCTCGA
TTTTATTTTGGGCAAACGACTGGCGGACTTATGA
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Synonyms
Publications