NO02G03130.1, NO02G03130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03130.1
Unique NameNO02G03130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length880
Alignment locationchr2:840775..842546 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:840775..842546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03130.1 vs.
Match: EWM30358.1 (dolichol-phosphate mannosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 420.2 bits (1079), Expect = 4.500e-114
Identity = 213/257 (82.88%), Postives = 234/257 (91.05%), Query Frame = 0 
Query:    1 MASSSFARRGKGVQQVSSPSPPELSILLPTYNERENLPLVLWLVYKHLTASHISYEVIIIEDNSPDGTLEVAQQLQTLYGPEIIQIRQRPGKLGLGSAYMDGLALVRGNLVVLMDADLSHHPKFIPAMYRKQLEGGFDVVTGTRYALGGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMARVRSRGYVFQMEVIVRARQLGFKIAEVPITFVDRIYGESKLGALEIVAYLRGLGQLFISI 258
            MA+SS   + +   + SS SPPELSILLPTYNERENLPL+LWL+ +H+T SHISYEVIIIEDNSPD TL+VA++LQ LYGP++IQI QRPGKLGLGSAY+DGLAL R + VVLMDADLSHHPKFIP ++RKQ EG FDVVTGTRYA+GGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVM RVRS+GYVFQMEVIVRARQLG +IAEVPITFVDRIYGESKLGA EIVAYLRGLGQLF+SI
Sbjct:    1 MAASSPHSKSRLRGKQSSRSPPELSILLPTYNERENLPLMLWLIDRHMTESHISYEVIIIEDNSPDNTLQVAEKLQELYGPQVIQIHQRPGKLGLGSAYVDGLALARADRVVLMDADLSHHPKFIPELFRKQQEGDFDVVTGTRYAMGGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMGRVRSKGYVFQMEVIVRARQLGLRIAEVPITFVDRIYGESKLGAGEIVAYLRGLGQLFLSI 257
The following BLAST results are available for this feature:
BLAST of NO02G03130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30358.14.500e-11482.88dolichol-phosphate mannosyltransferase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03130NO02G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03130.1NO02G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03130.1.cds1NO02G03130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03130.1.cds2NO02G03130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03130.1.cds3NO02G03130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03130.1.cds4NO02G03130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03130.1 ID=NO02G03130.1|Name=NO02G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=880bp
CCACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATT
CGCCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCG
AGCTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTA
GTGCTGTGGCTGGTGTACAAGCACTTGACGGCAAGTCACATTTCGTACGA
GGTGATAATCATTGAGGACAACAGCCCTGACGGCACTCTGGAAGTAGCGC
AGCAGTTGCAGACATTGTACGGCCCCGAGATAATCCAAATACGCCAGCGG
CCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGGACGGGCTGGCCTTGGT
GCGGGGGAATCTGGTAGTGCTGATGGACGCGGATCTCTCCCACCATCCCA
AGTTTATCCCAGCGATGTACCGAAAGCAGCTAGAAGGAGGCTTTGATGTG
GTGACGGGGACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCT
AAGACGGAAGCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGC
TGCAACCGGGCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAA
TCGGCATTGGCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTT
TCAAATGGAGGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTG
AGGTGCCGATTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGG
GCCTTGGAAATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTC
GATATAAATGAAGGGCATTAGTGAATTGGGCTCAGCGTAGAACGAAGACG
GGGAAAAGACGTGTTTACATACGTAGATAG
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protein sequence of NO02G03130.1

>NO02G03130.1-protein ID=NO02G03130.1-protein|Name=NO02G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MASSSFARRGKGVQQVSSPSPPELSILLPTYNERENLPLVLWLVYKHLTA
SHISYEVIIIEDNSPDGTLEVAQQLQTLYGPEIIQIRQRPGKLGLGSAYM
DGLALVRGNLVVLMDADLSHHPKFIPAMYRKQLEGGFDVVTGTRYALGGG
VSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMARVR
SRGYVFQMEVIVRARQLGFKIAEVPITFVDRIYGESKLGALEIVAYLRGL
GQLFISI*
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mRNA from alignment at chr2:840775..842546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03130.1 ID=NO02G03130.1|Name=NO02G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at chr2:840775..842546+ (Nannochloropsis oceanica)
CCACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATT
CGCCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCG
AGCTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTA
GTGCTGTGGCTGGTGTACAAGCACTTGACGGCAAGGTGCGTGCGGGTAAA
TAATTGGCAGGAGGGCGCTGGAAAGAGGGAGGATGAGGAATATGGGCTCT
GCGATGATTCAACGGAGACACAGGGCGTCTCGCCGCCTGTGGTGTGTGTC
TGTACAGGGCGCACACACACAAGTCCTCGCAATCGTTGATCGGAGATAGA
ACAGGATGGAGTGAGATCGGTGCATTATTATAGCTTCTCTCTTTACCTTC
GGCAGTGTCAAGAGCGGATGATGCCAAACTCCCTTCCATTAAGGGGTGAT
TGTGGTGGGATTGGCTTCTGCTTTGCGCATCCCCTCACGGATCTGTACTT
TCTCCAACTGTGCACCAAGCCTATTTCTCCCCCTCTATCTCTTAACAACA
TTTATAGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCT
GACGGCACTCTGGAAGTAGCGCAGCAGTTGCAGGTAAGTAGGAGTTGATG
TTGGGCAAGGAGACGGGCATCTTTGTCAGAATATAAAAGTCGGGTCAAGT
TTGCCAGGAAGATGGCTATATATATGGATATGGATAAATATCTAGATGTA
GATATCAGCAAACATAGATGGAGATAGATCAAGATAGACAGATAAGGACA
TATGCACACATAAGAAACAGACATAGACAACACAGACTCTCGCCTCTTGT
ACATTCATACACCCCCAAATGTTGCAGACATTGTACGGCCCCGAGATAAT
CCAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGG
ACGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGAT
CTCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGGTGCGTGTTTGT
GGGTTGATTGCGATTGAACGCAAGGGTAGTCACAGAAGGGGATATTTGGT
ACGAATTAATGAAATACAAAAAAAAATCGGCGGGCAATAGTTCATCAGGA
AATACGGGCTGGAGCACGGCCTCCACATGCTGCCGCCAGGTTATACCACG
TACCTTGGGGAAGGTGGTTAGGTGTCATGAATGTGTTCATAGTATTTCAT
GCGCGATTTACTCACGTCCATCTACGGCACGCACTTCCACACATGCTGAT
CCACAATATGACAGAAAGCAGCTAGAAGGAGGCTTTGATGTGGTGACGGG
GACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAAGACGGA
AGCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTGCAACCG
GGCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATCGGCATT
GGCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTCAAATGG
AGGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAGGTGCCG
ATTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGCCTTGGA
AATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGATATAAA
TGAAGGGCATTAGTGAATTGGGCTCAGCGTAGAACGAAGACGGGGAAAAG
ACGTGTTTACATACGTAGATAG
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Coding sequence (CDS) from alignment at chr2:840775..842546+

>NO02G03130.1 ID=NO02G03130.1|Name=NO02G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr2:840775..842546+ (Nannochloropsis oceanica)
ATGGCTTCATCATCATTCGCCAGACGAGGGAAGGGGGTGCAGCAGGTATC
ATCGCCGTCGCCGCCCGAGCTTTCCATCTTGCTACCTACCTACAACGAGC
GGGAAAACTTGCCGCTAGTGCTGTGGCTGGTGTACAAGCACTTGACGGCA
AGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCTGACGG
CACTCTGGAAGTAGCGCAGCAGTTGCAGACATTGTACGGCCCCGAGATAA
TCCAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATG
GACGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGA
TCTCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGAAAGCAGCTAG
AAGGAGGCTTTGATGTGGTGACGGGGACACGTTACGCCTTGGGCGGAGGC
GTAAGTGGGTGGGACCTAAGACGGAAGCTCATCAGCCGAGGCGCCAACTT
CCTCGCTGCCTTTCTGCTGCAACCGGGCGTGTCGGATTTGACAGGCTCCT
TCCGCTTGTACCGGAAATCGGCATTGGCGGCAGTCATGGCGCGCGTACGA
TCGCGGGGTTATGTGTTTCAAATGGAGGTGATTGTGCGAGCCCGGCAATT
GGGCTTCAAAATTGCTGAGGTGCCGATTACTTTTGTAGATCGCATCTACG
GAGAGAGCAAATTGGGGGCCTTGGAAATTGTGGCGTACCTACGCGGATTA
GGCCAGCTTTTTATTTCGATATAA
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Synonyms
Publications