NO02G03100.1, NO02G03100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03100.1
Unique NameNO02G03100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2287
Alignment locationchr2:832077..834363 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:832077..834363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G03100.1 vs.
Match: EWM30323.1 (nicotinate phosphoribosyltransferase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 928.7 bits (2399), Expect = 8.400e-267
Identity = 457/547 (83.55%), Postives = 492/547 (89.95%), Query Frame = 0 
Query:   10 SDGAAAQDDSSSPSTSPNLPPPPMSSFVRPMLTDMYQITMVFAYWKQKRHQDRAIFELFFRKTPFKGEFAIMAGIDEVLKYLAHFRFSEEELIYLRKQIPHAEEDFFVWLGQLDCSAVKVYALPDGTTCFGIEPLIRVEGPLAIGQLLETTLLNLVNYPSLIATNAARHRLAVGPDKVLIEFGLRRAQGPDGAMSAAKYSYLGGFDGTSNVLAGRLLSIAISGTHAHAYVQSYVSLDDLQNPFLDDQNLVEKALAYRSTLGFSDSNLGEFAAFVAYAQSWPDNFLCLVDTYDTLNSGIPNFLSVALALHDLGYAPVGVRLDSGDLAYLSKRIRAWFTRVASTHGRPTFEKLRIVASNNINEDVLYALSKQGHSIDAFGVGTHLVTCQAQPALGCVYKLVEICGKPRIKISNEVEKVTLPSRKDLYRFFNESGVAVVDFMTKNGEAAPKPGQRRLCRHPFDSKKRAYVTPSTVEPLLKLVWDGQAGGIQPGALRTLGESREFVMDQLKGIREDVLRHINPTPYKVSVSEELHALLHQLWEMNAPVGQL 557
            +D   A    SSP    N P P MSS+VRPMLTDMYQITMVFAYWKQKRH+DRA+FE+FFRKTPFKGEFAIMAG+DEVLKYLA+FRFS EEL YLR QIPHAEE+FF WLG +DCS VKVYAL DGTTCFG EPL+RVEG LA+ QLLETTLLNL+NYPSLIATNAARHRLAVGPDKVL EFGLRRAQGPDGAMSA+KYSYLGGFDGTSNVLAG LL IAISGTHAHAYVQSYV LD LQ PFL  QNLVEKALAYRS LG+S+SN+GE AAF+AYAQSWPDNFLCLVDTYDTLNSG+PNF+SVALAL+DLGY+P+G+RLDSGDLAYLSKRIR WFT VAS + RP  + LRIVASN+INEDVLYALSKQGHSIDAFGVGTHLVTCQAQPALGCVYKLVEI G+PRIK+SNEVEKVTLPSRK LYRFFNE+GVA+VDFMT++GE APK GQR LCRHPFDSKKRAYVTP+T+ PLL LVWDGQ GGIQPGA RTL ESR  VM QLK IREDVLRHINPTPYKVSVSEELHALLHQLWE+NAPVGQL
Sbjct:    8 NDHDTAVGAKSSPKPWSNTPSP-MSSYVRPMLTDMYQITMVFAYWKQKRHEDRAVFEVFFRKTPFKGEFAIMAGLDEVLKYLANFRFSSEELDYLRGQIPHAEEEFFTWLGTVDCSCVKVYALQDGTTCFGKEPLVRVEGSLAVAQLLETTLLNLLNYPSLIATNAARHRLAVGPDKVLFEFGLRRAQGPDGAMSASKYSYLGGFDGTSNVLAGHLLGIAISGTHAHAYVQSYVGLDSLQTPFLRGQNLVEKALAYRSALGYSESNVGELAAFIAYAQSWPDNFLCLVDTYDTLNSGVPNFMSVALALYDLGYSPLGIRLDSGDLAYLSKRIRKWFTEVASAYSRPALQMLRIVASNDINEDVLYALSKQGHSIDAFGVGTHLVTCQAQPALGCVYKLVEIDGQPRIKLSNEVEKVTLPSRKHLYRFFNENGVALVDFMTRDGEPAPKEGQRLLCRHPFDSKKRAYVTPTTIVPLLSLVWDGQKGGIQPGASRTLEESRTHVMGQLKEIREDVLRHINPTPYKVSVSEELHALLHQLWELNAPVGQL 553
The following BLAST results are available for this feature:
BLAST of NO02G03100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30323.18.400e-26783.55nicotinate phosphoribosyltransferase-like protein ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03100NO02G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03100.1NO02G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03100.1.cds1NO02G03100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03100.1 ID=NO02G03100.1|Name=NO02G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp
GTTGTCGTAGAACTTACTTTCCATCCCGAGGGAGGTGTATGCAGGCCAAA
CCCTCTGAAATGGGCGCAATATCTCTATGAAAGGTTGTTGGAATACATTG
TCCGACCTCCTTCGAGGCGGAGCCGCATAGTTGAAGTATAGGTGCTTGCT
TCATCCATCTCATGACGCTTTGCCAGTGACTCACTCATGCATGTGACACA
TTTAGTTCTGCTCGCTCAAGCCTGGCCCCTCCTGACATGCACACATTGCA
CTTGTAGGTGGGCCACGTTTAGTATAGACGCCACCCCTGTCGCACCATCG
GTCCCAGAGCAGGAGCACGCTTCCCTACTCCTGTACGCTCCCCCTGCTTC
CCCCCCTGCTCGTCAACGATGGCGACGCCAGCGGCTGCGAATTACAGTGA
CGGCGCGGCCGCTCAGGATGACAGCTCCTCTCCTTCAACATCTCCCAATC
TTCCACCCCCGCCCATGTCGTCGTTCGTACGGCCTATGCTGACCGATATG
TACCAAATTACAATGGTCTTCGCGTACTGGAAGCAAAAGCGGCACCAGGA
CAGGGCCATCTTTGAGCTCTTTTTCCGGAAGACACCCTTTAAGGGAGAGT
TTGCCATTATGGCCGGCATTGACGAAGTACTCAAGTACTTGGCCCACTTT
CGCTTCTCCGAGGAGGAGCTGATTTATTTACGAAAGCAAATTCCGCATGC
CGAGGAGGATTTTTTTGTCTGGTTGGGACAATTAGATTGCTCAGCCGTCA
AAGTATACGCCCTGCCCGACGGTACCACATGCTTTGGTATAGAGCCCCTG
ATCCGCGTGGAAGGTCCCTTGGCGATTGGACAGCTTTTGGAGACGACGCT
CCTAAATCTGGTCAACTACCCTTCCCTCATCGCCACCAACGCCGCCCGTC
ACCGCCTGGCCGTGGGGCCGGACAAGGTGCTGATTGAGTTTGGATTGCGA
AGGGCCCAGGGTCCGGACGGTGCCATGTCTGCGGCAAAGTACTCCTATCT
CGGGGGATTCGATGGGACGAGCAATGTGCTTGCGGGCCGTTTGCTCAGCA
TCGCCATCAGTGGCACCCACGCTCATGCGTATGTGCAATCGTACGTGAGC
CTGGATGACCTCCAGAATCCCTTTTTAGACGATCAAAATCTGGTAGAGAA
AGCGTTGGCATACCGGTCCACCTTGGGCTTTTCCGATAGTAATTTGGGGG
AGTTTGCGGCCTTTGTCGCTTATGCTCAGTCATGGCCCGATAACTTTCTG
TGTTTGGTCGATACCTACGATACGCTCAATTCGGGGATACCCAATTTTCT
GAGTGTTGCTTTGGCGTTGCATGATTTGGGGTATGCGCCGGTGGGGGTAC
GGTTGGACTCGGGAGACTTGGCTTACTTGTCAAAGCGGATCAGGGCGTGG
TTTACCAGGGTGGCGTCGACTCACGGACGGCCGACGTTTGAAAAGCTTCG
GATTGTGGCGAGTAATAATATCAATGAAGATGTGTTGTACGCCTTGAGTA
AGCAGGGACATTCCATCGATGCCTTCGGCGTGGGAACTCACTTGGTCACG
TGTCAGGCACAGCCGGCCTTGGGATGTGTTTATAAGCTGGTGGAGATCTG
CGGGAAACCACGGATCAAGATCTCTAATGAAGTAGAGAAAGTTACCTTGC
CGAGTCGGAAGGACCTCTATCGCTTTTTCAACGAATCAGGCGTGGCCGTG
GTGGATTTCATGACTAAAAACGGTGAAGCCGCGCCAAAACCAGGGCAGCG
CCGATTGTGTCGGCATCCGTTCGACTCGAAGAAGCGTGCTTATGTCACAC
CCTCCACCGTCGAACCGTTGCTTAAGCTGGTTTGGGACGGACAGGCGGGT
GGCATTCAACCAGGGGCCTTGCGGACATTGGGAGAAAGTAGAGAGTTCGT
GATGGATCAGTTGAAGGGCATCCGAGAGGATGTTTTGAGGCACATTAATC
CTACGCCGTACAAGGTAAGCGTTAGTGAGGAGCTCCATGCGTTGTTGCAC
CAGCTTTGGGAGATGAATGCACCGGTGGGTCAGCTATGATATGGAGGGAG
GGAGGATGAGGAAAGGAAAAGATTGAGCGGGCTTGTGCCCCGTTTGTTTA
TGTACAAAGAAATGTTTATGATGTTTCTTTTTTAAAAGAATGTTTGACGG
ATCAAATATGTTGTCTCTGTCTTGTTTGGCGTGCCCTTAGTACGATGGAA
TAGGAAAGGGAGACAGGAGAGAAAGTGACAAACAAGTTCGACCCGCGACA
AAGACAAATGAGATTTTAAAAATCTAGCAAAGCGGAT
back to top

protein sequence of NO02G03100.1

>NO02G03100.1-protein ID=NO02G03100.1-protein|Name=NO02G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MATPAAANYSDGAAAQDDSSSPSTSPNLPPPPMSSFVRPMLTDMYQITMV
FAYWKQKRHQDRAIFELFFRKTPFKGEFAIMAGIDEVLKYLAHFRFSEEE
LIYLRKQIPHAEEDFFVWLGQLDCSAVKVYALPDGTTCFGIEPLIRVEGP
LAIGQLLETTLLNLVNYPSLIATNAARHRLAVGPDKVLIEFGLRRAQGPD
GAMSAAKYSYLGGFDGTSNVLAGRLLSIAISGTHAHAYVQSYVSLDDLQN
PFLDDQNLVEKALAYRSTLGFSDSNLGEFAAFVAYAQSWPDNFLCLVDTY
DTLNSGIPNFLSVALALHDLGYAPVGVRLDSGDLAYLSKRIRAWFTRVAS
THGRPTFEKLRIVASNNINEDVLYALSKQGHSIDAFGVGTHLVTCQAQPA
LGCVYKLVEICGKPRIKISNEVEKVTLPSRKDLYRFFNESGVAVVDFMTK
NGEAAPKPGQRRLCRHPFDSKKRAYVTPSTVEPLLKLVWDGQAGGIQPGA
LRTLGESREFVMDQLKGIREDVLRHINPTPYKVSVSEELHALLHQLWEMN
APVGQL*
back to top

mRNA from alignment at chr2:832077..834363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03100.1 ID=NO02G03100.1|Name=NO02G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp|location=Sequence derived from alignment at chr2:832077..834363+ (Nannochloropsis oceanica)
GTTGTCGTAGAACTTACTTTCCATCCCGAGGGAGGTGTATGCAGGCCAAA
CCCTCTGAAATGGGCGCAATATCTCTATGAAAGGTTGTTGGAATACATTG
TCCGACCTCCTTCGAGGCGGAGCCGCATAGTTGAAGTATAGGTGCTTGCT
TCATCCATCTCATGACGCTTTGCCAGTGACTCACTCATGCATGTGACACA
TTTAGTTCTGCTCGCTCAAGCCTGGCCCCTCCTGACATGCACACATTGCA
CTTGTAGGTGGGCCACGTTTAGTATAGACGCCACCCCTGTCGCACCATCG
GTCCCAGAGCAGGAGCACGCTTCCCTACTCCTGTACGCTCCCCCTGCTTC
CCCCCCTGCTCGTCAACGATGGCGACGCCAGCGGCTGCGAATTACAGTGA
CGGCGCGGCCGCTCAGGATGACAGCTCCTCTCCTTCAACATCTCCCAATC
TTCCACCCCCGCCCATGTCGTCGTTCGTACGGCCTATGCTGACCGATATG
TACCAAATTACAATGGTCTTCGCGTACTGGAAGCAAAAGCGGCACCAGGA
CAGGGCCATCTTTGAGCTCTTTTTCCGGAAGACACCCTTTAAGGGAGAGT
TTGCCATTATGGCCGGCATTGACGAAGTACTCAAGTACTTGGCCCACTTT
CGCTTCTCCGAGGAGGAGCTGATTTATTTACGAAAGCAAATTCCGCATGC
CGAGGAGGATTTTTTTGTCTGGTTGGGACAATTAGATTGCTCAGCCGTCA
AAGTATACGCCCTGCCCGACGGTACCACATGCTTTGGTATAGAGCCCCTG
ATCCGCGTGGAAGGTCCCTTGGCGATTGGACAGCTTTTGGAGACGACGCT
CCTAAATCTGGTCAACTACCCTTCCCTCATCGCCACCAACGCCGCCCGTC
ACCGCCTGGCCGTGGGGCCGGACAAGGTGCTGATTGAGTTTGGATTGCGA
AGGGCCCAGGGTCCGGACGGTGCCATGTCTGCGGCAAAGTACTCCTATCT
CGGGGGATTCGATGGGACGAGCAATGTGCTTGCGGGCCGTTTGCTCAGCA
TCGCCATCAGTGGCACCCACGCTCATGCGTATGTGCAATCGTACGTGAGC
CTGGATGACCTCCAGAATCCCTTTTTAGACGATCAAAATCTGGTAGAGAA
AGCGTTGGCATACCGGTCCACCTTGGGCTTTTCCGATAGTAATTTGGGGG
AGTTTGCGGCCTTTGTCGCTTATGCTCAGTCATGGCCCGATAACTTTCTG
TGTTTGGTCGATACCTACGATACGCTCAATTCGGGGATACCCAATTTTCT
GAGTGTTGCTTTGGCGTTGCATGATTTGGGGTATGCGCCGGTGGGGGTAC
GGTTGGACTCGGGAGACTTGGCTTACTTGTCAAAGCGGATCAGGGCGTGG
TTTACCAGGGTGGCGTCGACTCACGGACGGCCGACGTTTGAAAAGCTTCG
GATTGTGGCGAGTAATAATATCAATGAAGATGTGTTGTACGCCTTGAGTA
AGCAGGGACATTCCATCGATGCCTTCGGCGTGGGAACTCACTTGGTCACG
TGTCAGGCACAGCCGGCCTTGGGATGTGTTTATAAGCTGGTGGAGATCTG
CGGGAAACCACGGATCAAGATCTCTAATGAAGTAGAGAAAGTTACCTTGC
CGAGTCGGAAGGACCTCTATCGCTTTTTCAACGAATCAGGCGTGGCCGTG
GTGGATTTCATGACTAAAAACGGTGAAGCCGCGCCAAAACCAGGGCAGCG
CCGATTGTGTCGGCATCCGTTCGACTCGAAGAAGCGTGCTTATGTCACAC
CCTCCACCGTCGAACCGTTGCTTAAGCTGGTTTGGGACGGACAGGCGGGT
GGCATTCAACCAGGGGCCTTGCGGACATTGGGAGAAAGTAGAGAGTTCGT
GATGGATCAGTTGAAGGGCATCCGAGAGGATGTTTTGAGGCACATTAATC
CTACGCCGTACAAGGTAAGCGTTAGTGAGGAGCTCCATGCGTTGTTGCAC
CAGCTTTGGGAGATGAATGCACCGGTGGGTCAGCTATGATATGGAGGGAG
GGAGGATGAGGAAAGGAAAAGATTGAGCGGGCTTGTGCCCCGTTTGTTTA
TGTACAAAGAAATGTTTATGATGTTTCTTTTTTAAAAGAATGTTTGACGG
ATCAAATATGTTGTCTCTGTCTTGTTTGGCGTGCCCTTAGTACGATGGAA
TAGGAAAGGGAGACAGGAGAGAAAGTGACAAACAAGTTCGACCCGCGACA
AAGACAAATGAGATTTTAAAAATCTAGCAAAGCGGAT
back to top

Coding sequence (CDS) from alignment at chr2:832077..834363+

>NO02G03100.1 ID=NO02G03100.1|Name=NO02G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr2:832077..834363+ (Nannochloropsis oceanica)
ATGGCGACGCCAGCGGCTGCGAATTACAGTGACGGCGCGGCCGCTCAGGA
TGACAGCTCCTCTCCTTCAACATCTCCCAATCTTCCACCCCCGCCCATGT
CGTCGTTCGTACGGCCTATGCTGACCGATATGTACCAAATTACAATGGTC
TTCGCGTACTGGAAGCAAAAGCGGCACCAGGACAGGGCCATCTTTGAGCT
CTTTTTCCGGAAGACACCCTTTAAGGGAGAGTTTGCCATTATGGCCGGCA
TTGACGAAGTACTCAAGTACTTGGCCCACTTTCGCTTCTCCGAGGAGGAG
CTGATTTATTTACGAAAGCAAATTCCGCATGCCGAGGAGGATTTTTTTGT
CTGGTTGGGACAATTAGATTGCTCAGCCGTCAAAGTATACGCCCTGCCCG
ACGGTACCACATGCTTTGGTATAGAGCCCCTGATCCGCGTGGAAGGTCCC
TTGGCGATTGGACAGCTTTTGGAGACGACGCTCCTAAATCTGGTCAACTA
CCCTTCCCTCATCGCCACCAACGCCGCCCGTCACCGCCTGGCCGTGGGGC
CGGACAAGGTGCTGATTGAGTTTGGATTGCGAAGGGCCCAGGGTCCGGAC
GGTGCCATGTCTGCGGCAAAGTACTCCTATCTCGGGGGATTCGATGGGAC
GAGCAATGTGCTTGCGGGCCGTTTGCTCAGCATCGCCATCAGTGGCACCC
ACGCTCATGCGTATGTGCAATCGTACGTGAGCCTGGATGACCTCCAGAAT
CCCTTTTTAGACGATCAAAATCTGGTAGAGAAAGCGTTGGCATACCGGTC
CACCTTGGGCTTTTCCGATAGTAATTTGGGGGAGTTTGCGGCCTTTGTCG
CTTATGCTCAGTCATGGCCCGATAACTTTCTGTGTTTGGTCGATACCTAC
GATACGCTCAATTCGGGGATACCCAATTTTCTGAGTGTTGCTTTGGCGTT
GCATGATTTGGGGTATGCGCCGGTGGGGGTACGGTTGGACTCGGGAGACT
TGGCTTACTTGTCAAAGCGGATCAGGGCGTGGTTTACCAGGGTGGCGTCG
ACTCACGGACGGCCGACGTTTGAAAAGCTTCGGATTGTGGCGAGTAATAA
TATCAATGAAGATGTGTTGTACGCCTTGAGTAAGCAGGGACATTCCATCG
ATGCCTTCGGCGTGGGAACTCACTTGGTCACGTGTCAGGCACAGCCGGCC
TTGGGATGTGTTTATAAGCTGGTGGAGATCTGCGGGAAACCACGGATCAA
GATCTCTAATGAAGTAGAGAAAGTTACCTTGCCGAGTCGGAAGGACCTCT
ATCGCTTTTTCAACGAATCAGGCGTGGCCGTGGTGGATTTCATGACTAAA
AACGGTGAAGCCGCGCCAAAACCAGGGCAGCGCCGATTGTGTCGGCATCC
GTTCGACTCGAAGAAGCGTGCTTATGTCACACCCTCCACCGTCGAACCGT
TGCTTAAGCTGGTTTGGGACGGACAGGCGGGTGGCATTCAACCAGGGGCC
TTGCGGACATTGGGAGAAAGTAGAGAGTTCGTGATGGATCAGTTGAAGGG
CATCCGAGAGGATGTTTTGAGGCACATTAATCCTACGCCGTACAAGGTAA
GCGTTAGTGAGGAGCTCCATGCGTTGTTGCACCAGCTTTGGGAGATGAAT
GCACCGGTGGGTCAGCTATGA
back to top
Synonyms
Publications