NO02G02890.1, NO02G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02890.1
Unique NameNO02G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1064
Alignment locationchr2:778728..780211 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:778728..780211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02890.1 vs.
Match: EWM30413.1 (Tetratricopeptide TPR2 [Nannochloropsis gaditana])

HSP 1 Score: 330.1 bits (845), Expect = 6.300e-87
Identity = 151/198 (76.26%), Postives = 176/198 (88.89%), Query Frame = 0 
Query:   65 SWFGGDGTNRKDPQVLVRQGMDVFRQGDVQGSIKYFDKALAIGGAVIEPYLWQRGLSLYYAGKYKEGADQFRKDVAVNPADTEESIWAFLCEAQLDGFEKARKQMLVVQTDPRPYMRRAYELFRGKCTEEDLAKEGATPASPAAFYALLYLGLYAEAKGEGDKARNYIQASVATPYGKAGRDYMTSLARVHLSVRGWV 263
            SWF G     K+P+VLV +GM++FR+GDV+GSI YFD+AL +GGA +EPYLWQRGLSLYYAG+Y+EGA+QFRKDVAVNPADTEE+IWAFLCEAQ+DGFE+AR++ML+VQTDPRPYMRRAYELF+G C+EEDLAKEGA  +SPAAFYALLYLGLYAEA+ E DKARNYI ASVATPYG A RDYM  LARVHL +R W+
Sbjct:   67 SWFSGRSEKSKEPRVLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDGFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKEGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKWI 264
The following BLAST results are available for this feature:
BLAST of NO02G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30413.16.300e-8776.26Tetratricopeptide TPR2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02890NO02G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02890.1NO02G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02890.1.cds1NO02G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02890.1.cds2NO02G02890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02890.1.cds3NO02G02890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02890.1 ID=NO02G02890.1|Name=NO02G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp
GCACACAACTACGGCCACGTTTTTTTCTTCTTTTCAGCAGTATGGTGCTC
TTGAGGGGAGGTTGAGGATGTTTTCACAGTGGTTGTAGTAGTAGCACTAG
TAGTTGTAGTGGGGTAAGTGTTGTGATTTGCCGATTCAGTCCGGACTGAG
AATACCTGTTATCCCTCACACCCACTCGCGTCAAATTTCTTCCTAGGGCA
ACCGCACAACGTATGGGACCACTATCACGAGCCATAGAGCTGTCCATCCG
AGCTTTTGCCTGTTTTCTACTGCTCGCTGTCGTCGCAGCTGTTGGAGTCT
CAAAAACCACCCTACCTGGCTTTGCACCGGCTTCAACCTCCCTCGCGGCA
CCACTGGTCGCAACAACCAGAACCCGCAGCATATCGTCGACAGTGACAGC
GTCCTCGTGGTTTGGTGGTGATGGGACCAACCGCAAGGACCCTCAGGTGT
TGGTTCGGCAAGGCATGGACGTCTTCCGGCAAGGCGACGTGCAAGGCTCG
ATCAAGTACTTCGACAAGGCTCTTGCTATTGGTGGAGCCGTGATTGAACC
CTATTTATGGCAGCGGGGCCTGTCGCTGTACTACGCCGGCAAATATAAGG
AGGGGGCTGATCAATTTCGCAAGGATGTGGCCGTAAATCCCGCTGATACT
GAAGAGTCAATTTGGGCCTTCCTCTGCGAAGCTCAACTTGACGGTTTCGA
GAAGGCACGCAAACAAATGCTGGTCGTTCAGACTGACCCTCGTCCTTACA
TGCGTCGGGCGTATGAGCTGTTCCGTGGGAAATGCACTGAAGAGGACCTA
GCTAAGGAAGGAGCGACACCTGCGTCGCCCGCTGCGTTTTATGCCTTGTT
GTATCTGGGGTTATACGCTGAGGCAAAGGGGGAGGGGGATAAGGCACGAA
ACTATATTCAAGCAAGCGTGGCGACGCCATATGGGAAGGCGGGGCGGGAT
TACATGACAAGTTTGGCAAGGGTACATCTGTCAGTTCGAGGATGGGTATG
ATTGCTCTGAGCTTATCAGTGGCAGGGTAAATCGATAAAGAACATAGAAT
AGATGGTACAAGTG
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protein sequence of NO02G02890.1

>NO02G02890.1-protein ID=NO02G02890.1-protein|Name=NO02G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MGPLSRAIELSIRAFACFLLLAVVAAVGVSKTTLPGFAPASTSLAAPLVA
TTRTRSISSTVTASSWFGGDGTNRKDPQVLVRQGMDVFRQGDVQGSIKYF
DKALAIGGAVIEPYLWQRGLSLYYAGKYKEGADQFRKDVAVNPADTEESI
WAFLCEAQLDGFEKARKQMLVVQTDPRPYMRRAYELFRGKCTEEDLAKEG
ATPASPAAFYALLYLGLYAEAKGEGDKARNYIQASVATPYGKAGRDYMTS
LARVHLSVRGWV*
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mRNA from alignment at chr2:778728..780211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02890.1 ID=NO02G02890.1|Name=NO02G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at chr2:778728..780211+ (Nannochloropsis oceanica)
GCACACAACTACGGCCACGTTTTTTTCTTCTTTTCAGCAGTATGGTGCTC
TTGAGGGGAGGTTGAGGATGTTTTCACAGTGGTTGTAGTAGTAGCACTAG
TAGTTGTAGTGGGGTAAGTGTTGTGATTTGCCGATTCAGTCCGGACTGAG
AATACCTGTTATCCCTCACACCCACTCGCGTCAAATTTCTTCCTAGGGCA
ACCGCACAACGTATGGGACCACTATCACGAGCCATAGAGCTGTCCATCCG
AGCTTTTGCCTGTTTTCTACTGCTCGCTGTCGTCGCAGCTGTTGGAGTCT
CAAAAACCACCCTACCTGGCTTTGCACCGGCTTCAACCTCCCTCGCGGCA
CCACTGGTCGCAACAACCAGAACCCGCAGCATATCGTCGACAGTGACAGC
GTCCTCGTGGTTTGGTGGTGATGGGACCAACCGCAAGGACCCTCAGGTGT
TGGTTCGGCAAGGTAATAAACAAGTTTATGATTAAAATACTGAATGAAAA
GCGGCAGGATAGGGGCCTCTTTTGCGGATGTGAACACGGTCCTGGCCCGC
ACAAATTCAATAAATTGGATAAGGATATGCTATGGGGATATATATTTAGG
TTAGCCCTCTATATTCCAGCGATTTGTGGCAAGCTTTTTCCTTTGTACAA
CAATAATAACTTGTCATATTTCCATTCTAACTCTCACTCCCTCTATCCTC
TCTTCCCCCCCAAGGCATGGACGTCTTCCGGCAAGGCGACGTGCAAGGCT
CGATCAAGTACTTCGACAAGGCTCTTGCTATTGGTGGAGCCGTGATTGAA
CCCTATTTATGGCAGCGGGGCCTGTCGCTGTACTACGCCGGCAAATATAA
GGAGGGGGCTGATCAATTTCGTGGGTAACTTTCTCTTCGTGGAATCGTGT
GTGAGGATGTGCGCGGGCTTGCGGGATGACTGCTACGACTCACGCGGCGC
CTGAGAGGAAGTTTTCTTCCTTTCCCTTACGATCATTTGTTTTCTCCCCA
GCTTTTATCTCTCACTGCCACCATCGCACACTCAACAGGCAAGGATGTGG
CCGTAAATCCCGCTGATACTGAAGAGTCAATTTGGGCCTTCCTCTGCGAA
GCTCAACTTGACGGTTTCGAGAAGGCACGCAAACAAATGCTGGTCGTTCA
GACTGACCCTCGTCCTTACATGCGTCGGGCGTATGAGCTGTTCCGTGGGA
AATGCACTGAAGAGGACCTAGCTAAGGAAGGAGCGACACCTGCGTCGCCC
GCTGCGTTTTATGCCTTGTTGTATCTGGGGTTATACGCTGAGGCAAAGGG
GGAGGGGGATAAGGCACGAAACTATATTCAAGCAAGCGTGGCGACGCCAT
ATGGGAAGGCGGGGCGGGATTACATGACAAGTTTGGCAAGGGTACATCTG
TCAGTTCGAGGATGGGTATGATTGCTCTGAGCTTATCAGTGGCAGGGTAA
ATCGATAAAGAACATAGAATAGATGGTACAAGTG
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Coding sequence (CDS) from alignment at chr2:778728..780211+

>NO02G02890.1 ID=NO02G02890.1|Name=NO02G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr2:778728..780211+ (Nannochloropsis oceanica)
ATGGGACCACTATCACGAGCCATAGAGCTGTCCATCCGAGCTTTTGCCTG
TTTTCTACTGCTCGCTGTCGTCGCAGCTGTTGGAGTCTCAAAAACCACCC
TACCTGGCTTTGCACCGGCTTCAACCTCCCTCGCGGCACCACTGGTCGCA
ACAACCAGAACCCGCAGCATATCGTCGACAGTGACAGCGTCCTCGTGGTT
TGGTGGTGATGGGACCAACCGCAAGGACCCTCAGGTGTTGGTTCGGCAAG
GCATGGACGTCTTCCGGCAAGGCGACGTGCAAGGCTCGATCAAGTACTTC
GACAAGGCTCTTGCTATTGGTGGAGCCGTGATTGAACCCTATTTATGGCA
GCGGGGCCTGTCGCTGTACTACGCCGGCAAATATAAGGAGGGGGCTGATC
AATTTCGCAAGGATGTGGCCGTAAATCCCGCTGATACTGAAGAGTCAATT
TGGGCCTTCCTCTGCGAAGCTCAACTTGACGGTTTCGAGAAGGCACGCAA
ACAAATGCTGGTCGTTCAGACTGACCCTCGTCCTTACATGCGTCGGGCGT
ATGAGCTGTTCCGTGGGAAATGCACTGAAGAGGACCTAGCTAAGGAAGGA
GCGACACCTGCGTCGCCCGCTGCGTTTTATGCCTTGTTGTATCTGGGGTT
ATACGCTGAGGCAAAGGGGGAGGGGGATAAGGCACGAAACTATATTCAAG
CAAGCGTGGCGACGCCATATGGGAAGGCGGGGCGGGATTACATGACAAGT
TTGGCAAGGGTACATCTGTCAGTTCGAGGATGGGTATGA
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Synonyms
Publications