NO02G02790.1, NO02G02790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02790.1
Unique NameNO02G02790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length811
Alignment locationchr2:758659..759469 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:758659..759469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02790.1 vs.
Match: EWM30395.1 (hypothetical protein Naga_100026g24 [Nannochloropsis gaditana])

HSP 1 Score: 99.0 bits (245), Expect = 1.700e-17
Identity = 73/155 (47.10%), Postives = 87/155 (56.13%), Query Frame = 0 
Query:   34 MRGAFPILCLIVLTSMVCQAFLWTRSCLSSSSSSSGLLKARGGAVIRGKKSVGTARATSTSIGLNR-TRVYKKKGFVSRLMGGVKAFVKSYFASLINPTFEKELTKSNSITSRGAGGGGSATAA-LKSSAARRKRTGGRRTGSISDLVPEP-SCG 186
            MR     LC+ +L   VC+A+            S+   K RGGAV++        R T  S+  +R  RVYKK     R  GG+K F KSYFASLINPTFEKEL   N    RG+G G +  A+ LK+   RRKR GGRR GSISDL PEP SCG
Sbjct:    1 MRCVQLFLCISILMVAVCEAW---------RVRSADFSKVRGGAVLK-------TRTTGKSMTAHRRNRVYKKDNAFVRFFGGMKVFFKSYFASLINPTFEKELMTGN----RGSGAGVAGPASDLKAGKVRRKRVGGRRVGSISDLAPEPSSCG 135
The following BLAST results are available for this feature:
BLAST of NO02G02790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30395.11.700e-1747.10hypothetical protein Naga_100026g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02790NO02G02790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02790.1NO02G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02790.1.cds1NO02G02790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02790.1 ID=NO02G02790.1|Name=NO02G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=811bp
CGAGGGGAATCCAACGGTGGGCGACGAGGGCCGAGACGGGGAACCCTCTT
CGTCTGTCTCTAGAAGGCCCTCTGGCGCCGCAAGGCAACCCAAAGACATC
TTCAAAACATTCCCATGACGAGCTCAGCCTGTTCAATGTCGTCTTGTCGC
GGGATAGTGGAGGCGTAGCTTTCATGGGCGGCATGCGAATAGCACCACTA
GGAGAAAAAGCCATATCTCGTGACAAAGCATCATCCCTTCCCCTTTCCTT
CCTTTATGCAGACAGAGCAGACATGAGGGGGGCCTTTCCCATACTATGCC
TGATTGTGTTGACATCGATGGTCTGCCAGGCATTCCTGTGGACTAGGTCG
TGTTTATCGTCATCATCGTCGTCGTCGGGGCTGCTGAAAGCGCGGGGAGG
TGCAGTCATACGAGGAAAGAAAAGTGTGGGGACAGCGAGAGCAACTAGCA
CCAGCATCGGCCTCAACCGTACCCGAGTTTACAAGAAGAAGGGATTCGTT
TCTCGCCTTATGGGAGGCGTGAAGGCGTTTGTGAAGTCCTACTTTGCATC
CTTAATCAACCCGACGTTTGAGAAGGAGCTTACCAAGAGCAACAGCATTA
CTAGTCGCGGCGCCGGTGGGGGTGGGAGTGCCACTGCGGCCTTAAAATCC
AGTGCTGCTCGGAGAAAACGAACAGGTGGTCGACGGACGGGGTCGATAAG
TGACTTGGTACCTGAGCCTTCTTGCGGAGGGTAGAGTAGTGCTGGACTTG
TGCAAAATTGATATCAACTCAAAGTAAACCGTGCTTCACGAGTGCTAACA
AAAGAATAGAA
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protein sequence of NO02G02790.1

>NO02G02790.1-protein ID=NO02G02790.1-protein|Name=NO02G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MGGMRIAPLGEKAISRDKASSLPLSFLYADRADMRGAFPILCLIVLTSMV
CQAFLWTRSCLSSSSSSSGLLKARGGAVIRGKKSVGTARATSTSIGLNRT
RVYKKKGFVSRLMGGVKAFVKSYFASLINPTFEKELTKSNSITSRGAGGG
GSATAALKSSAARRKRTGGRRTGSISDLVPEPSCGG*
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mRNA from alignment at chr2:758659..759469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02790.1 ID=NO02G02790.1|Name=NO02G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=811bp|location=Sequence derived from alignment at chr2:758659..759469- (Nannochloropsis oceanica)
CGAGGGGAATCCAACGGTGGGCGACGAGGGCCGAGACGGGGAACCCTCTT
CGTCTGTCTCTAGAAGGCCCTCTGGCGCCGCAAGGCAACCCAAAGACATC
TTCAAAACATTCCCATGACGAGCTCAGCCTGTTCAATGTCGTCTTGTCGC
GGGATAGTGGAGGCGTAGCTTTCATGGGCGGCATGCGAATAGCACCACTA
GGAGAAAAAGCCATATCTCGTGACAAAGCATCATCCCTTCCCCTTTCCTT
CCTTTATGCAGACAGAGCAGACATGAGGGGGGCCTTTCCCATACTATGCC
TGATTGTGTTGACATCGATGGTCTGCCAGGCATTCCTGTGGACTAGGTCG
TGTTTATCGTCATCATCGTCGTCGTCGGGGCTGCTGAAAGCGCGGGGAGG
TGCAGTCATACGAGGAAAGAAAAGTGTGGGGACAGCGAGAGCAACTAGCA
CCAGCATCGGCCTCAACCGTACCCGAGTTTACAAGAAGAAGGGATTCGTT
TCTCGCCTTATGGGAGGCGTGAAGGCGTTTGTGAAGTCCTACTTTGCATC
CTTAATCAACCCGACGTTTGAGAAGGAGCTTACCAAGAGCAACAGCATTA
CTAGTCGCGGCGCCGGTGGGGGTGGGAGTGCCACTGCGGCCTTAAAATCC
AGTGCTGCTCGGAGAAAACGAACAGGTGGTCGACGGACGGGGTCGATAAG
TGACTTGGTACCTGAGCCTTCTTGCGGAGGGTAGAGTAGTGCTGGACTTG
TGCAAAATTGATATCAACTCAAAGTAAACCGTGCTTCACGAGTGCTAACA
AAAGAATAGAA
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Coding sequence (CDS) from alignment at chr2:758659..759469-

>NO02G02790.1 ID=NO02G02790.1|Name=NO02G02790.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr2:758659..759469- (Nannochloropsis oceanica)
ATGGGCGGCATGCGAATAGCACCACTAGGAGAAAAAGCCATATCTCGTGA
CAAAGCATCATCCCTTCCCCTTTCCTTCCTTTATGCAGACAGAGCAGACA
TGAGGGGGGCCTTTCCCATACTATGCCTGATTGTGTTGACATCGATGGTC
TGCCAGGCATTCCTGTGGACTAGGTCGTGTTTATCGTCATCATCGTCGTC
GTCGGGGCTGCTGAAAGCGCGGGGAGGTGCAGTCATACGAGGAAAGAAAA
GTGTGGGGACAGCGAGAGCAACTAGCACCAGCATCGGCCTCAACCGTACC
CGAGTTTACAAGAAGAAGGGATTCGTTTCTCGCCTTATGGGAGGCGTGAA
GGCGTTTGTGAAGTCCTACTTTGCATCCTTAATCAACCCGACGTTTGAGA
AGGAGCTTACCAAGAGCAACAGCATTACTAGTCGCGGCGCCGGTGGGGGT
GGGAGTGCCACTGCGGCCTTAAAATCCAGTGCTGCTCGGAGAAAACGAAC
AGGTGGTCGACGGACGGGGTCGATAAGTGACTTGGTACCTGAGCCTTCTT
GCGGAGGGTAG
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Synonyms
Publications