NO02G02760.1, NO02G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02760.1
Unique NameNO02G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1255
Alignment locationchr2:751983..753237 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:751983..753237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02760.1 vs.
Match: EWM30401.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 2.400e-61
Identity = 149/294 (50.68%), Postives = 205/294 (69.73%), Query Frame = 0 
Query:    9 AALEMVLQPVLLLSSIHALSCLSSVFPSLSTSSKSTTARLVGMSMSTLQLLGLLAWSDPLMAIMLGLVALCVAGNMYNVALAAAVLPSLLLVVLSPERRAVVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFLYLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQLSLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNANYLYFQTLVWTVFHSLLVLEVTVVLVQHATDRNRVEEGSENRTQRTQKGSNE 303
            A +  V + VLL++ I+AL+ L++ FPS   S  S  AR+V  S+ST  L  LLA+ DPL+A +LGL A CV+G+  N++LA +V PS++LV  S   R  +F+       P+MG+WWY+M+EVF Q+  YFRL+ AAHPFLY+PPLAFRVL   +     PLP  LLRL ++V A I++L  P PIL QQ+++ +AL+  HP LL AL  K+LLL VG+G PL+L+PIM YLWLDA+SGNANYLYFQTLVW+  ++LL+LEVTVVLV+ A  R       ++R + + +G+N+
Sbjct:   27 AVICAVSRSVLLVTIINALAHLAA-FPS---SQFSANARIVFFSLSTGFLFCLLAYLDPLVASVLGLSAFCVSGHTRNISLAMSVAPSMILVFTSQTLRTSLFHTPQTPPVPNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAK---PLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAA-RAEGRGQRKDRRRESHQGNNK 312
The following BLAST results are available for this feature:
BLAST of NO02G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30401.12.400e-6150.68conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02760NO02G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02760.1NO02G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02760.1.cds1NO02G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02760.1 ID=NO02G02760.1|Name=NO02G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp
GCACACATCCGCCCTCAAGAACTAAAACAAAGTACACACATGACATGCTA
CAGACATGCCGCCAGACGATGTCATCGTCGCGGCTCTGGAGATGGTATTG
CAGCCGGTTCTCCTGCTGTCGTCAATCCATGCCTTGTCCTGCCTATCGTC
TGTTTTCCCATCATTGTCGACCTCCTCCAAGTCCACCACCGCCAGACTGG
TAGGCATGTCCATGTCCACGCTACAGCTCCTCGGTCTACTCGCCTGGTCG
GACCCCCTTATGGCAATCATGCTGGGACTGGTGGCTTTGTGCGTGGCCGG
TAACATGTACAATGTAGCTCTTGCCGCAGCGGTGCTGCCTTCGCTTTTGC
TTGTGGTGCTCTCCCCGGAGCGACGGGCAGTAGTATTTTACCCTGAGCCG
ATGGCGATGAGGCCTGACATGGGCATTTGGTGGTACCTCATGTCCGAAGT
ATTCCGGCAATACCAACCTTACTTCCGCCTGATCTTAGCGGCCCACCCCT
TTTTGTACTTGCCTCCCTTGGCCTTCCGAGTCCTTGCAGGCAGCGCGACG
TCGAAGCAACATCCCTTGCCCGAAGCATTACTCCGACTCCTTTACTTAGT
GACAGCTTCTATATCTATGCTCTTCCGTCCTTCTCCCATTCTGACACAAC
AGCTTTCTCTTGCCATCGCCCTTGTGGCGTGGCATCCAGACCTTCTGACG
GCGCTTCGACCAAAGCTTCTGCTTCTGAGCGTGGGGTTGGGGGCCCCTTT
GATCCTAGCACCCATCATGGAATACTTATGGTTAGATGCACAATCGGGAA
ATGCGAATTATTTGTATTTTCAGACATTGGTATGGACGGTCTTTCATTCG
TTGCTGGTGCTGGAGGTGACTGTAGTGCTTGTGCAGCATGCGACTGACAG
GAATCGAGTCGAGGAAGGAAGTGAGAATAGGACACAACGGACACAGAAAG
GAAGCAATGAGTTAAGGTAGCTGGAATGATTTGAATGTATATTTTCCTGT
TCTTGGATGGGTTCATCTATAGTGTGTGTAAGGATTGCTCCCAATAGGCC
AGAGACGACTTTTCCGATTTTCGGTCGCCGGTCGCACAAAGCCTGTGTTT
TATGTGTATCTTGTGTATAAGATTCGTAAACACCTGACTTAAATTGTGAT
TGCTAGTGCCTGAGTCTCTCCAAGGGCTGTTGACGGAGAAGTGAAAAGCG
TGGTCACAGGCACGCCGGACTGCCCCAGAGGGACAATTAAAGCCTTATAT
TTTGA
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protein sequence of NO02G02760.1

>NO02G02760.1-protein ID=NO02G02760.1-protein|Name=NO02G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MPPDDVIVAALEMVLQPVLLLSSIHALSCLSSVFPSLSTSSKSTTARLVG
MSMSTLQLLGLLAWSDPLMAIMLGLVALCVAGNMYNVALAAAVLPSLLLV
VLSPERRAVVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFL
YLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQL
SLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNA
NYLYFQTLVWTVFHSLLVLEVTVVLVQHATDRNRVEEGSENRTQRTQKGS
NELR*
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mRNA from alignment at chr2:751983..753237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02760.1 ID=NO02G02760.1|Name=NO02G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp|location=Sequence derived from alignment at chr2:751983..753237+ (Nannochloropsis oceanica)
GCACACATCCGCCCTCAAGAACTAAAACAAAGTACACACATGACATGCTA
CAGACATGCCGCCAGACGATGTCATCGTCGCGGCTCTGGAGATGGTATTG
CAGCCGGTTCTCCTGCTGTCGTCAATCCATGCCTTGTCCTGCCTATCGTC
TGTTTTCCCATCATTGTCGACCTCCTCCAAGTCCACCACCGCCAGACTGG
TAGGCATGTCCATGTCCACGCTACAGCTCCTCGGTCTACTCGCCTGGTCG
GACCCCCTTATGGCAATCATGCTGGGACTGGTGGCTTTGTGCGTGGCCGG
TAACATGTACAATGTAGCTCTTGCCGCAGCGGTGCTGCCTTCGCTTTTGC
TTGTGGTGCTCTCCCCGGAGCGACGGGCAGTAGTATTTTACCCTGAGCCG
ATGGCGATGAGGCCTGACATGGGCATTTGGTGGTACCTCATGTCCGAAGT
ATTCCGGCAATACCAACCTTACTTCCGCCTGATCTTAGCGGCCCACCCCT
TTTTGTACTTGCCTCCCTTGGCCTTCCGAGTCCTTGCAGGCAGCGCGACG
TCGAAGCAACATCCCTTGCCCGAAGCATTACTCCGACTCCTTTACTTAGT
GACAGCTTCTATATCTATGCTCTTCCGTCCTTCTCCCATTCTGACACAAC
AGCTTTCTCTTGCCATCGCCCTTGTGGCGTGGCATCCAGACCTTCTGACG
GCGCTTCGACCAAAGCTTCTGCTTCTGAGCGTGGGGTTGGGGGCCCCTTT
GATCCTAGCACCCATCATGGAATACTTATGGTTAGATGCACAATCGGGAA
ATGCGAATTATTTGTATTTTCAGACATTGGTATGGACGGTCTTTCATTCG
TTGCTGGTGCTGGAGGTGACTGTAGTGCTTGTGCAGCATGCGACTGACAG
GAATCGAGTCGAGGAAGGAAGTGAGAATAGGACACAACGGACACAGAAAG
GAAGCAATGAGTTAAGGTAGCTGGAATGATTTGAATGTATATTTTCCTGT
TCTTGGATGGGTTCATCTATAGTGTGTGTAAGGATTGCTCCCAATAGGCC
AGAGACGACTTTTCCGATTTTCGGTCGCCGGTCGCACAAAGCCTGTGTTT
TATGTGTATCTTGTGTATAAGATTCGTAAACACCTGACTTAAATTGTGAT
TGCTAGTGCCTGAGTCTCTCCAAGGGCTGTTGACGGAGAAGTGAAAAGCG
TGGTCACAGGCACGCCGGACTGCCCCAGAGGGACAATTAAAGCCTTATAT
TTTGA
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Coding sequence (CDS) from alignment at chr2:751983..753237+

>NO02G02760.1 ID=NO02G02760.1|Name=NO02G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr2:751983..753237+ (Nannochloropsis oceanica)
ATGCCGCCAGACGATGTCATCGTCGCGGCTCTGGAGATGGTATTGCAGCC
GGTTCTCCTGCTGTCGTCAATCCATGCCTTGTCCTGCCTATCGTCTGTTT
TCCCATCATTGTCGACCTCCTCCAAGTCCACCACCGCCAGACTGGTAGGC
ATGTCCATGTCCACGCTACAGCTCCTCGGTCTACTCGCCTGGTCGGACCC
CCTTATGGCAATCATGCTGGGACTGGTGGCTTTGTGCGTGGCCGGTAACA
TGTACAATGTAGCTCTTGCCGCAGCGGTGCTGCCTTCGCTTTTGCTTGTG
GTGCTCTCCCCGGAGCGACGGGCAGTAGTATTTTACCCTGAGCCGATGGC
GATGAGGCCTGACATGGGCATTTGGTGGTACCTCATGTCCGAAGTATTCC
GGCAATACCAACCTTACTTCCGCCTGATCTTAGCGGCCCACCCCTTTTTG
TACTTGCCTCCCTTGGCCTTCCGAGTCCTTGCAGGCAGCGCGACGTCGAA
GCAACATCCCTTGCCCGAAGCATTACTCCGACTCCTTTACTTAGTGACAG
CTTCTATATCTATGCTCTTCCGTCCTTCTCCCATTCTGACACAACAGCTT
TCTCTTGCCATCGCCCTTGTGGCGTGGCATCCAGACCTTCTGACGGCGCT
TCGACCAAAGCTTCTGCTTCTGAGCGTGGGGTTGGGGGCCCCTTTGATCC
TAGCACCCATCATGGAATACTTATGGTTAGATGCACAATCGGGAAATGCG
AATTATTTGTATTTTCAGACATTGGTATGGACGGTCTTTCATTCGTTGCT
GGTGCTGGAGGTGACTGTAGTGCTTGTGCAGCATGCGACTGACAGGAATC
GAGTCGAGGAAGGAAGTGAGAATAGGACACAACGGACACAGAAAGGAAGC
AATGAGTTAAGGTAG
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Synonyms
Publications