|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:737145..740654 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02680.1 vs.
Match: XP_005853553.1 (proteasome subunit alpha [Nannochloropsis gaditana CCMP526]; EKU22802.1 proteasome subunit alpha [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 267.3 bits (682), Expect = 7.100e-68 Identity = 180/340 (52.94%), Postives = 218/340 (64.12%), Query Frame = 0
Query: 30 PCLLLLSLVHVLLLLPGTIAEDLSPISPLTRFDAKGQLPQSDAAARAVARGGPLVALSLKEAVLLVAPSERRPRSLIENRGLPKMWRLTDGICLSHVGLIQDSRALLLAAQQAAFEHENRFGEHIPIAELVEVVAGKQQEATMQGSRRPYGSSILIAGLLPDLRGPASIPTSSSSSDSHRRKGVLYPRIYRTDPSGTFTLWRACALGRGTETIMALLEDKYAPEMERKEALKLALECCRVLMSGGREKREEKEEVGREGGEKKKKKKEEEEEEEEEEEEEEEEEEEEVEIKKRTSLMTEAGPEEAEEDLMVAGVDVALISREGVRMWESVSPVEKLLDLV 370
P +LLL LV+ L+ GT AE SPISPLTRFDAKGQLPQSDAAARAV+RG PL+ALSL EA+LLVAP QDSR LLLAAQQAA +HENRFGE IP+AE+VEV+A KQQEATMQG RRPYGSSILIAGLL + PA T S+ L+PRIY+TDPSGTFTLW+ACA+GRG ET M +LE+KY P+M+ ++ALKL+L+CCR L+ E G GE+ K KE++ E E ++ EE T A EE + D GVDVAL+S EGV +WES+SP+E++L+LV
Sbjct: 31 PKVLLLVLVN-LIWSSGTFAESFSPISPLTRFDAKGQLPQSDAAARAVSRGAPLIALSLGEAILLVAPR-------------------------------QDSRTLLLAAQQAAADHENRFGEDIPVAEVVEVIAAKQQEATMQGRRRPYGSSILIAGLLEETPDPA---TKSNKQ--------LFPRIYKTDPSGTFTLWKACAVGRGAETAMTVLEEKYEPDMDLRDALKLSLDCCRALL-----------ENGGVIGEEVNKGKEDKSEVERSQQGGSEE--------------TGAAREE-KGDRARVGVDVALVSNEGVALWESISPMEEILELV 301
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02680.1 ID=NO02G02680.1|Name=NO02G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=3246bp
CGGGTTTTAGGGAATTGATTCATTTTTTATGCTTTGCTTCATGTACAAGC
TCAAATATTTATAAGACTTTAAGGCGTTTAAAATTTTTCTTTCCCTCTAT
GCATAGCGTCGCAGCATTGCACCTTTCCCCCCCGAGGATGACCCTTGACT
TTCTTCCTGCTGTTGACCAGTGGAAGAACCGGAAGCTGTCGTTTTCCCCG
TTGCTGCCGTGGAATTGGTCACATGAGAACTCGAAGCTTGTCTCGCTATT
TGCAAGTGGTGAATGAAAAAGTTGAATTCGAGGGCACAGGAGGCTAGGTC
TTCCACCGTGCCCTTGGTCGGCTTGTTGGCCGAAAGCAGAGAGTCCATCG
TTTGGTACGTTTTCTATTTATTTTATGGGTCAGGGGAGGTAAAAAGTCAC
ATGAAATCAGGGGATCGACGGAGTAGAGTTAGCTGTAGGCAGATATGTGA
AGAATTATGTGTAGTGAGAGGGACAAGGGGGTAGGTGCGTTTCTAGAGGG
AGTTGTGGCGTTTGGGAAGGGGACGAAGGACAATGCCTGGTTGCGTTGTA
CAAGCGCAGGAAACAGACAGGAATCATTCCGGAACCAGGAAAGGGGAGCA
TAGAAGGGGGAAGGAGATGTCTAATCAAGTCGATGGACTAGGATGAAGGG
CACAACCCTGTCGTCTTTGCCTTGCGCGGCGTCAACCCCTTCTCCGTCCC
TTTTCTCTCTAGCCACCAACCCAAGTACGCACCGCAATGGTCCGGTCCAA
TTCGTCCAGCAGATCGGCTATCTCTTGCTGTGGTGCGGCCATGCTTGCTG
CCTGCCGGTGTGGTGTGGGCGTTGGGTCGTGAGGTGGGTCGTAGGTCGAG
GGAGGTACTTGACCGGAAAAGAGGACCACCTGCAACCTTTGCACCTTGAT
CCGTGGCTATTCTTTAGACTTCGTCTGCCGCTGCGCGATTTGTATAGGAT
GCCTGAATCGAGGGGGGGTGGAGGACGTGAGTACGAGTGGTTGTCACGCG
GTACTCTGAGGGCTAGTGTGGTGAAGAAGGAGTAGGAGGAGTAGTCCGCT
CAACATTCCCGGACTGAGACACCCTTACTTTCACAACTTTTCACGAATGG
CCACCACCGCACATCACACAGGACGACCACATGCCACCATATGCCCTAAA
GGGTGCAAGAAAGGGATGCGTGTCCAAGGCCCCCAGCGATGTCAGGCTCC
TTTTTCAGCCTCCTACCCCCTGCCTCCTCCTCCTTTCCTTGGTTCATGTC
CTCCTACTACTACCTGGCACTATTGCTGAAGATTTAAGTCCCATCAGTCC
CTTAACACGCTTCGATGCCAAAGGTCAACTACCCCAAAGTGACGCCGCGG
CGCGGGCCGTGGCACGGGGAGGCCCCCTCGTTGCCCTCTCGCTCAAGGAA
GCCGTTTTGCTTGTTGCACCAAGCGAACGCCGGCCCCGCTCCCTCATCGA
AAACCGGGGCCTCCCCAAAATGTGGCGTCTCACGGACGGCATCTGCCTAA
GCCACGTCGGCCTCATCCAAGACAGCCGCGCCCTCCTTCTTGCCGCGCAA
CAGGCCGCATTTGAGCATGAGAATCGGTTCGGGGAACACATCCCGATAGC
GGAGCTGGTGGAAGTGGTGGCTGGGAAGCAGCAAGAGGCGACGATGCAAG
GGAGTAGGCGGCCCTATGGCTCCAGCATCCTTATCGCAGGCTTGCTCCCT
GACCTGCGAGGCCCTGCTTCCATCCCAACCAGCAGTAGCAGCAGCGACAG
TCATAGACGAAAAGGTGTTTTATACCCGCGTATTTATAGGACGGACCCCT
CGGGGACCTTCACATTGTGGAGGGCATGTGCCTTGGGCCGGGGGACGGAG
ACCATCATGGCATTGTTGGAGGACAAGTATGCGCCAGAGATGGAGCGGAA
GGAAGCGTTGAAATTGGCCTTGGAATGCTGCAGGGTTTTGATGAGTGGTG
GAAGGGAGAAGAGGGAGGAGAAGGAAGAGGTGGGGAGGGAAGGGGGGGAG
AAGAAGAAGAAGAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAAATCAAGAAAAGGACAT
CTTTGATGACGGAGGCGGGCCCTGAGGAAGCGGAGGAGGACCTAATGGTG
GCAGGAGTAGACGTAGCATTGATCTCGAGGGAGGGTGTGAGGATGTGGGA
GAGTGTGTCACCTGTGGAGAAGCTTCTGGACCTGGTTGAGGACAACTGGG
TGTGAAGACGAAGGAAGAAGACAAAGAACAAGTCGACATGGCGGTCGTAG
GTAGTAAACAGTGATTGATGGTGAAGGTTATCAGGGGGGGAGGGGGGGGT
TGAGGGTTTGACCACATCTACTTGTCCTCCATGATGGCAGAGGACCGCGT
GCGGGATTTAGCGCTGGCGGGGTAGCGCTGGATAGATCAATCGATGCGGG
AGTGACGGTAGTGCCGAACAAGGGCAAATTTCTCCGGTCGAAGACGAAGT
TCTTGGGCTTTGTAGTCACTTGTGAGGGATTAGAGGCCAACCCCGACGCG
ATGGCGGCGGTGACGGATTTCCCCACGCCCAAAAACGCCCGGGACATGCG
CCCGCCTCGATCAGTCTATCTGGCACCAACGCTACATCCCGCACGTGGTC
CTCCACCGTCTTGGAGAAACGTTCATGTAGTCGAAGAGCACGTGAACATC
TTACCACTTCATCCCTCTAGAGATAATATCAGCGAGACGATCCCACAACT
CCGGGATGTTCCGAAGCCTAAAAGGCGCTATATTCATACTCAAACTGACC
GCACGTGTAGACAAAGGCCGTCTTGAGGATGGAATCTTGGTCGACCACTA
TCTTGTGGTACAACGAAAGGACATCCATTTCTCTTAAGTACCTCGCCCCT
TTCAGCACGTCCAATCATGAGTCGATGAGGGTGGTAGGGTTATGTGTCTC
GCTCTTCCTCACGACCTTAAGCCCCAAATAGTCCACGCGAACCTTACCTT
GCCCTTCTCCTTGACGATGACGACGTTGGCGCCTCCCAGGGAAAGCTGGA
CTCGCGGATGATGCCAGCCTTTTAGAGAGAGGCCAACTTCTGCTGCACAA
AATTATCGTGTGCGGAGACATGGCGGTTTTGTTAAAGATCAACCAAAAAG
CAACAAGTGAGTATTTAAAGAAATCGAAATGCATACACTGAAAATAACTT
AGTACGAGCTTAAAAACGTAGCCAAAAAAAATGATGGGGATGCAAG back to topprotein sequence of NO02G02680.1 >NO02G02680.1-protein ID=NO02G02680.1-protein|Name=NO02G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MPPYALKGARKGCVSKAPSDVRLLFQPPTPCLLLLSLVHVLLLLPGTIAE
DLSPISPLTRFDAKGQLPQSDAAARAVARGGPLVALSLKEAVLLVAPSER
RPRSLIENRGLPKMWRLTDGICLSHVGLIQDSRALLLAAQQAAFEHENRF
GEHIPIAELVEVVAGKQQEATMQGSRRPYGSSILIAGLLPDLRGPASIPT
SSSSSDSHRRKGVLYPRIYRTDPSGTFTLWRACALGRGTETIMALLEDKY
APEMERKEALKLALECCRVLMSGGREKREEKEEVGREGGEKKKKKKEEEE
EEEEEEEEEEEEEEEEVEIKKRTSLMTEAGPEEAEEDLMVAGVDVALISR
EGVRMWESVSPVEKLLDLVEDNWV* back to topmRNA from alignment at chr2:737145..740654- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02680.1 ID=NO02G02680.1|Name=NO02G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=3510bp|location=Sequence derived from alignment at chr2:737145..740654- (Nannochloropsis oceanica)
CGGGTTTTAGGGAATTGATTCATTTTTTATGCTTTGCTTCATGTACAAGC
TCAAATATTTATAAGACTTTAAGGCGTTTAAAATTTTTCTTTCCCTCTAT
GCATAGCGTCGCAGCATTGCACCTTTCCCCCCCGAGGATGACCCTTGACT
TTCTTCCTGCTGTTGACCAGTGGAAGAACCGGAAGCTGTCGTTTTCCCCG
TTGCTGCCGTGGAATTGGTCACATGAGAACTCGAAGCTTGTCTCGCTATT
TGCAAGTGGTGAATGAAAAAGTTGAATTCGAGGGCACAGGAGGCTAGGTC
TTCCACCGTGCCCTTGGTCGGCTTGTTGGCCGAAAGCAGAGAGTCCATCG
TTTGGTACGTTTTCTATTTATTTTATGGGTCAGGGGAGGTAAAAAGTCAC
ATGAAATCAGGGGATCGACGGAGTAGAGTTAGCTGTAGGCAGATATGTGA
AGAATTATGTGTAGTGAGAGGGACAAGGGGGTAGGTGCGTTTCTAGAGGG
AGTTGTGGCGTTTGGGAAGGGGACGAAGGACAATGCCTGGTTGCGTTGTA
CAAGCGCAGGAAACAGACAGGAATCATTCCGGAACCAGGAAAGGGGAGCA
TAGAAGGGGGAAGGAGATGTCTAATCAAGTCGATGGACTAGGATGAAGGG
CACAACCCTGTCGTCTTTGCCTTGCGCGGCGTCAACCCCTTCTCCGTCCC
TTTTCTCTCTAGCCACCAACCCAAGTACGCACCGCAATGGTCCGGTCCAA
TTCGTCCAGCAGATCGGCTATCTCTTGCTGTGGTGCGGCCATGCTTGCTG
CCTGCCGGTGTGGTGTGGGCGTTGGGTCGTGAGGTGGGTCGTAGGTCGAG
GGAGGTACTTGACCGGAAAAGAGGACCACCTGCAACCTTTGCACCTTGAT
CCGTGGCTATTCTTTAGACTTCGTCTGCCGCTGCGCGATTTGTATAGGAT
GCCTGAATCGAGGGGGGGTGGAGGACGTGAGTACGAGTGGTTGTCACGCG
GTACTCTGAGGGCTAGTGTGGTGAAGAAGGAGTAGGAGGAGTAGTCCGCT
CAACATTCCCGGACTGAGACACCCTTACTTTCACAACTTTTCACGAATGG
CCACCACCGCACATCACACAGGACGACCACATGCCACCATATGCCCTAAA
GGGTGCAAGAAAGGGATGCGTGTCCAAGGCCCCCAGCGATGTCAGGCTCC
TTTTTCAGCCTCCTACCCCCTGCCTCCTCCTCCTTTCCTTGGTTCATGTC
CTCCTACTACTACCTGGCACTATTGCTGAAGATTTAAGTCCCATCAGTCC
CTTAACACGCTTCGATGCCAAAGGTCAACTACCCCAAAGTGACGCCGCGG
CGCGGGCCGTGGCACGGGGAGGCCCCCTCGTTGCCCTCTCGCTCAAGGAA
GCCGTTTTGCTTGTTGCACCAAGGTAAGGGGAATTTGAGGGAGTATAAGA
GCAGAGGGGGGTTGGTATAATCTTGATAAGTTGAATGTGAACATGAAACC
TGAGTTGCGGGCCATGGGGAGGGACAAGGCTAAATAATGAGAGTGGACGG
ACTGGAGATGCTGGTCCTCCCCGCGGCATAGTCACCGCCTTTCTCCTACT
CACTCCTGTCATCCGCCCCACCAAATTATAAACCACACACGCTTCATCAA
CAAACTCACAAGTATCCCCTTTTTGACCCTTTTTAAGCGAACGCCGGCCC
CGCTCCCTCATCGAAAACCGGGGCCTCCCCAAAATGTGGCGTCTCACGGA
CGGCATCTGCCTAAGCCACGTCGGCCTCATCCAAGACAGCCGCGCCCTCC
TTCTTGCCGCGCAACAGGCCGCATTTGAGCATGAGAATCGGTTCGGGGAA
CACATCCCGATAGCGGAGCTGGTGGAAGTGGTGGCTGGGAAGCAGCAAGA
GGCGACGATGCAAGGGAGTAGGCGGCCCTATGGCTCCAGCATCCTTATCG
CAGGCTTGCTCCCTGACCTGCGAGGCCCTGCTTCCATCCCAACCAGCAGT
AGCAGCAGCGACAGTCATAGACGAAAAGGTGTTTTATACCCGCGTATTTA
TAGGACGGACCCCTCGGGGACCTTCACATTGTGGAGGGCATGTGCCTTGG
GCCGGGGGACGGAGACCATCATGGCATTGTTGGAGGACAAGTATGCGCCA
GAGATGGAGCGGAAGGAAGCGTTGAAATTGGCCTTGGAATGCTGCAGGGT
TTTGATGAGTGGTGGAAGGGAGAAGAGGGAGGAGAAGGAAGAGGTGGGGA
GGGAAGGGGGGGAGAAGAAGAAGAAGAAAAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAAAT
CAAGAAAAGGACATCTTTGATGACGGAGGCGGGCCCTGAGGAAGCGGAGG
AGGACCTAATGGTGGCAGGAGTAGACGTAGCATTGATCTCGAGGGAGGGT
GTGAGGATGTGGGAGAGTGTGTCACCTGTGGAGAAGCTTCTGGACCTGGT
TGAGGACAACTGGGTGTGAAGACGAAGGAAGAAGACAAAGAACAAGTCGA
CATGGCGGTCGTAGGTAGTAAACAGTGATTGATGGTGAAGGTTATCAGGG
GGGGAGGGGGGGGTTGAGGGTTTGACCACATCTACTTGTCCTCCATGATG
GCAGAGGACCGCGTGCGGGATTTAGCGCTGGCGGGGTAGCGCTGGATAGA
TCAATCGATGCGGGAGTGACGGTAGTGCCGAACAAGGGCAAATTTCTCCG
GTCGAAGACGAAGTTCTTGGGCTTTGTAGTCACTTGTGAGGGATTAGAGG
CCAACCCCGACGCGATGGCGGCGGTGACGGATTTCCCCACGCCCAAAAAC
GCCCGGGACATGCGCCCGCCTCGATCAGTCTATCTGGCACCAACGCTACA
TCCCGCACGTGGTCCTCCACCGTCTTGGAGAAACGTTCATGTAGTCGAAG
AGCACGTGAACATCTTACCACTTCATCCCTCTAGAGATAATATCAGCGAG
ACGATCCCACAACTCCGGGATGTTCCGAAGCCTAAAAGGCGCTATATTCA
TACTCAAACTGACCGCACGTGTAGACAAAGGCCGTCTTGAGGATGGAATC
TTGGTCGACCACTATCTTGTGGTACAACGAAAGGACATCCATTTCTCTTA
AGTACCTCGCCCCTTTCAGCACGTCCAATCATGAGTCGATGAGGGTGGTA
GGGTTATGTGTCTCGCTCTTCCTCACGACCTTAAGCCCCAAATAGTCCAC
GCGAACCTTACCTTGCCCTTCTCCTTGACGATGACGACGTTGGCGCCTCC
CAGGGAAAGCTGGACTCGCGGATGATGCCAGCCTTTTAGAGAGAGGCCAA
CTTCTGCTGCACAAAATTATCGTGTGCGGAGACATGGCGGTTTTGTTAAA
GATCAACCAAAAAGCAACAAGTGAGTATTTAAAGAAATCGAAATGCATAC
ACTGAAAATAACTTAGTACGAGCTTAAAAACGTAGCCAAAAAAAATGATG
GGGATGCAAG back to topCoding sequence (CDS) from alignment at chr2:737145..740654- >NO02G02680.1 ID=NO02G02680.1|Name=NO02G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr2:737145..740654- (Nannochloropsis oceanica)
ATGCCACCATATGCCCTAAAGGGTGCAAGAAAGGGATGCGTGTCCAAGGC
CCCCAGCGATGTCAGGCTCCTTTTTCAGCCTCCTACCCCCTGCCTCCTCC
TCCTTTCCTTGGTTCATGTCCTCCTACTACTACCTGGCACTATTGCTGAA
GATTTAAGTCCCATCAGTCCCTTAACACGCTTCGATGCCAAAGGTCAACT
ACCCCAAAGTGACGCCGCGGCGCGGGCCGTGGCACGGGGAGGCCCCCTCG
TTGCCCTCTCGCTCAAGGAAGCCGTTTTGCTTGTTGCACCAAGCGAACGC
CGGCCCCGCTCCCTCATCGAAAACCGGGGCCTCCCCAAAATGTGGCGTCT
CACGGACGGCATCTGCCTAAGCCACGTCGGCCTCATCCAAGACAGCCGCG
CCCTCCTTCTTGCCGCGCAACAGGCCGCATTTGAGCATGAGAATCGGTTC
GGGGAACACATCCCGATAGCGGAGCTGGTGGAAGTGGTGGCTGGGAAGCA
GCAAGAGGCGACGATGCAAGGGAGTAGGCGGCCCTATGGCTCCAGCATCC
TTATCGCAGGCTTGCTCCCTGACCTGCGAGGCCCTGCTTCCATCCCAACC
AGCAGTAGCAGCAGCGACAGTCATAGACGAAAAGGTGTTTTATACCCGCG
TATTTATAGGACGGACCCCTCGGGGACCTTCACATTGTGGAGGGCATGTG
CCTTGGGCCGGGGGACGGAGACCATCATGGCATTGTTGGAGGACAAGTAT
GCGCCAGAGATGGAGCGGAAGGAAGCGTTGAAATTGGCCTTGGAATGCTG
CAGGGTTTTGATGAGTGGTGGAAGGGAGAAGAGGGAGGAGAAGGAAGAGG
TGGGGAGGGAAGGGGGGGAGAAGAAGAAGAAGAAAAAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGT
GGAAATCAAGAAAAGGACATCTTTGATGACGGAGGCGGGCCCTGAGGAAG
CGGAGGAGGACCTAATGGTGGCAGGAGTAGACGTAGCATTGATCTCGAGG
GAGGGTGTGAGGATGTGGGAGAGTGTGTCACCTGTGGAGAAGCTTCTGGA
CCTGGTTGAGGACAACTGGGTGTGA back to top
|