NO02G02590.1, NO02G02590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02590.1
Unique NameNO02G02590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2440
Alignment locationchr2:720277..722905 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:720277..722905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02590.1 vs.
Match: EWM30400.1 (lariat debranching enzyme [Nannochloropsis gaditana])

HSP 1 Score: 708.0 bits (1826), Expect = 2.400e-200
Identity = 393/577 (68.11%), Postives = 436/577 (75.56%), Query Frame = 0 
Query:    3 HPNLRIVVEGCCHGELDQIYASIARMEQEKGQKMDLLICCGDFQAVRNKEDLKAMNVPSKYLTMASFHRYYSGEAIAPVLTLFVGGNHEASNHLQELYYGGWVAPNIYYLGCSGVVSVGGVRIAGISGIYNGRDYRRGHFETPPYSPSTLRSIYHVREYEVFKLAQLAVGTSNDGTGSAAPVDVMLSHDWPRGIYHHGNLPQLLRTKPYFRQECETNTLGSEAGELLLQQLQPSFWFAGHLHCKFAAVVRHPHQLQQQQ-QQRMTKFLALDKCLPNRDFLQLVEVPRPRDNWETPVRLEYDLEWLAILRSTHSLLSRAEREVVLPQESRMVSGADKDWVRQRLTAACQARGQDPAKHALEIPPSSFVRTAAVYSPSHPAAAAGDGTLRGSPQTDALLKLLELSHRVTIPYTHTPPLPHLSMRGQQQQQQESQQQQQQQEESQQQEEEQKQPRGGDSLFFLDRGE-KGR---DPNSIELDDEDGGDAAGEEEEEECDDEVAMRYKAQQQQQPQGKSENKEEEDVIVFRSGRSPPVAATVPATAATTATAAAAAAPQAGTASSPAL-PFRRKLVLPPPS 574
            H NLRIVVEGCCHGELDQIYASIA +EQE GQ +DLLICCGDFQAVRNKEDLK+MNVPSKYLTMASFHRYYSGE +APVLT+F+GGNHEASNHLQELYYGGWVAPNIYYLGCSGVVSVGGVRIAGISGIYNGRDY RGHFE PPYSPSTLRSIYHVREYEVFKLAQLA G+     G +A VDVMLSHDWPRGIYHHG++ QLLRTKPYFR+ECETNTLGS+A ELLL  LQPS+WFAGHLHCKFAAVVRH     Q      +TKFLALDKCLPNRDFLQLVE+PRP D WE PVRLEYDLEWLAILRSTHSLLSRAEREVVLP+ESR V+  D +WVR RL AAC+ RG DP++ ALEI P +FV+TA V+ PS      GDG LRGSPQTDALLKLLEL HRVT+PYT  P  P     G Q+      +  Q  + S  +EE++     G SLFFLDRGE +G    DP+SI+LD         E E  EC+D VA  Y  Q+  +P+  SE +  +DVIVF+   SP                 A AAP  G+  SP L P R KL+LPPPS
Sbjct:    2 HKNLRIVVEGCCHGELDQIYASIALIEQESGQNVDLLICCGDFQAVRNKEDLKSMNVPSKYLTMASFHRYYSGEKVAPVLTIFIGGNHEASNHLQELYYGGWVAPNIYYLGCSGVVSVGGVRIAGISGIYNGRDYHRGHFEAPPYSPSTLRSIYHVREYEVFKLAQLASGSG--ARGDSAHVDVMLSHDWPRGIYHHGDMGQLLRTKPYFRKECETNTLGSQAAELLLNLLQPSYWFAGHLHCKFAAVVRHSSSTSQMSTPANVTKFLALDKCLPNRDFLQLVEIPRPPDCWEQPVRLEYDLEWLAILRSTHSLLSRAEREVVLPRESRRVAPDDLEWVRARLAAACKRRGDDPSQ-ALEIQPDAFVKTAPVHEPSSTDGLHGDGCLRGSPQTDALLKLLELGHRVTVPYTPCP--PQAGAHGSQRSPSRRLENVQPGQRSSGEEEQR-----GTSLFFLDRGEDRGSSLPDPDSIDLD---------EVESAECEDAVAQEYDRQEIVKPE--SEGECGKDVIVFKGDHSP-----------------AHAAP--GSQPSPRLHPSRPKLILPPPS 538
The following BLAST results are available for this feature:
BLAST of NO02G02590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30400.12.400e-20068.11lariat debranching enzyme [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02590NO02G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02590.1NO02G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02590.1.cds1NO02G02590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02590.1.cds2NO02G02590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02590.1 ID=NO02G02590.1|Name=NO02G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2440bp
TCGTCGACGATCTGAGTACTCTTTATTTGTTTATTTATTTATTATTTTCC
AAATTCTCATTTTCTTCCAGCAACGGTTGCAGCGGAGAAGATCTGCTTAT
GAGAACGAATAATCACTCGTCCGTGGTCGGTGTTAGATTTAGTTGGGCCT
GTGGCATGGAGCCGTTGCCGCGTTGACGCTTGCTCCACCCGCAGGCCCAT
TTGTGATGGGAAACCCGTTCACTACTAGTCACCGAAAGCCGAGCATCTTC
TTGTAAATGCTGGTATAGTGAGAATCATATCTAAGAGCGGCTTCTGTTGG
TAGTGGAGGGGGAAATTTGAGCGCCCAGCCATCCACTGACGTCACACAGC
ACTCCAGTACAGGAGGAGCAGCGGCAGCATCTGGACCATTGCGCGAATAA
CCCCCGATGCCGTTGTTGCTGCCCGCCGCACGCCCTGTAGCAACCCGACA
CTCGACTGCTCTCTCACCTTCCCGTTCTCACACTTATCTTCCCACTCCAC
CAAGTAAGACAGTCAGCACCAGGCCGTATTTTAACTTTAGGAGTACCAAG
CCCCTCTGCTCCTTCGCCAACCTCCCCTTTCCTCATTATCAGACGCCAAA
CCCTAGTGTCAAACCAAAGCCCAAGCAAAATGCAGCACCCAAACCTGCGC
ATCGTCGTGGAAGGATGCTGTCATGGGGAGCTTGACCAGATCTACGCCTC
CATCGCCCGAATGGAACAAGAAAAAGGGCAGAAAATGGACCTTCTCATTT
GCTGCGGTGACTTCCAAGCGGTGCGCAATAAGGAAGACCTGAAGGCCATG
AACGTCCCGAGTAAGTACCTGACCATGGCCTCCTTCCATCGGTATTACAG
CGGAGAAGCCATCGCCCCGGTTTTGACCCTGTTCGTTGGCGGCAACCACG
AGGCATCCAACCACTTGCAAGAGCTGTACTATGGCGGGTGGGTCGCCCCC
AACATCTACTACCTTGGATGCTCTGGCGTGGTTTCTGTAGGCGGCGTACG
CATCGCGGGCATCTCCGGCATTTATAATGGACGAGACTACCGTCGTGGGC
ACTTCGAGACTCCGCCTTACTCTCCCAGCACTCTCCGTTCCATCTACCAC
GTCCGAGAATATGAAGTGTTCAAGCTTGCGCAACTCGCCGTGGGGACAAG
CAATGACGGCACCGGGAGCGCCGCACCGGTCGACGTAATGCTTTCGCATG
ACTGGCCTCGTGGCATATATCACCATGGAAATTTACCACAGCTGCTGCGG
ACTAAGCCTTACTTCCGACAGGAATGTGAGACGAACACTTTGGGAAGTGA
GGCTGGCGAGCTATTGCTCCAGCAACTTCAACCCTCTTTTTGGTTCGCGG
GGCATCTACACTGTAAATTTGCTGCTGTTGTGCGTCATCCCCACCAGCTA
CAGCAGCAGCAGCAGCAGCGCATGACGAAGTTTTTGGCGCTGGATAAGTG
TCTGCCGAACCGGGATTTTTTGCAGCTGGTGGAGGTGCCTCGCCCGAGGG
ACAATTGGGAGACACCGGTGCGATTAGAGTATGATTTGGAATGGCTGGCG
ATATTGAGATCTACACATTCATTGTTAAGTAGAGCAGAGAGGGAGGTTGT
GTTGCCGCAGGAGAGTAGGATGGTGTCGGGGGCAGATAAAGATTGGGTTC
GGCAACGCCTCACCGCCGCCTGCCAAGCCCGCGGACAAGACCCGGCCAAG
CATGCCCTGGAAATCCCCCCTTCGTCCTTCGTTCGCACGGCGGCCGTCTA
CAGCCCCTCCCATCCTGCTGCTGCTGCTGGAGATGGCACCTTGCGAGGAA
GCCCTCAAACAGATGCCCTGCTCAAGCTTTTGGAGTTGAGCCATCGAGTC
ACGATTCCGTACACACACACGCCTCCTCTGCCGCACCTTTCGATGCGTGG
GCAGCAGCAGCAGCAGCAGGAGTCGCAGCAGCAGCAGCAGCAGCAGGAGG
AGTCGCAGCAGCAGGAAGAAGAGCAGAAGCAGCCGAGAGGCGGGGATAGT
CTCTTTTTCCTTGATCGCGGGGAGAAGGGTCGTGACCCGAATTCGATTGA
GCTGGATGACGAGGATGGGGGGGATGCTGCGGGGGAGGAGGAAGAAGAGG
AGTGCGATGATGAGGTCGCGATGAGATATAAGGCGCAGCAGCAGCAGCAG
CCGCAAGGCAAGTCGGAGAATAAAGAGGAGGAGGACGTGATTGTGTTCAG
AAGCGGGAGAAGCCCACCCGTAGCAGCTACTGTTCCTGCTACTGCTGCTA
CTACTGCTACTGCTGCTGCTGCAGCAGCACCACAAGCGGGAACGGCCTCT
TCGCCGGCGCTTCCCTTCCGACGTAAGCTCGTGCTGCCACCACCGTCAGC
ATCGTCATCGTGAGGAAAAGTTCCAAAAAACAAGTAGAGAAAAAAGGATG
AAAAAAATGATTGAAAGAATGTCCATCCATCCATACAAAG
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protein sequence of NO02G02590.1

>NO02G02590.1-protein ID=NO02G02590.1-protein|Name=NO02G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MQHPNLRIVVEGCCHGELDQIYASIARMEQEKGQKMDLLICCGDFQAVRN
KEDLKAMNVPSKYLTMASFHRYYSGEAIAPVLTLFVGGNHEASNHLQELY
YGGWVAPNIYYLGCSGVVSVGGVRIAGISGIYNGRDYRRGHFETPPYSPS
TLRSIYHVREYEVFKLAQLAVGTSNDGTGSAAPVDVMLSHDWPRGIYHHG
NLPQLLRTKPYFRQECETNTLGSEAGELLLQQLQPSFWFAGHLHCKFAAV
VRHPHQLQQQQQQRMTKFLALDKCLPNRDFLQLVEVPRPRDNWETPVRLE
YDLEWLAILRSTHSLLSRAEREVVLPQESRMVSGADKDWVRQRLTAACQA
RGQDPAKHALEIPPSSFVRTAAVYSPSHPAAAAGDGTLRGSPQTDALLKL
LELSHRVTIPYTHTPPLPHLSMRGQQQQQQESQQQQQQQEESQQQEEEQK
QPRGGDSLFFLDRGEKGRDPNSIELDDEDGGDAAGEEEEEECDDEVAMRY
KAQQQQQPQGKSENKEEEDVIVFRSGRSPPVAATVPATAATTATAAAAAA
PQAGTASSPALPFRRKLVLPPPSASSS*
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mRNA from alignment at chr2:720277..722905+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02590.1 ID=NO02G02590.1|Name=NO02G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2629bp|location=Sequence derived from alignment at chr2:720277..722905+ (Nannochloropsis oceanica)
TCGTCGACGATCTGAGTACTCTTTATTTGTTTATTTATTTATTATTTTCC
AAATTCTCATTTTCTTCCAGCAACGGTTGCAGCGGAGAAGATCTGCTTAT
GAGAACGAATAATCACTCGTCCGTGGTCGGTGTTAGATTTAGTTGGGCCT
GTGGCATGGAGCCGTTGCCGCGTTGACGCTTGCTCCACCCGCAGGCCCAT
TTGTGATGGGAAACCCGTTCACTACTAGTCACCGAAAGCCGAGCATCTTC
TTGTAAATGCTGGTATAGTGAGAATCATATCTAAGAGCGGCTTCTGTTGG
TAGTGGAGGGGGAAATTTGAGCGCCCAGCCATCCACTGACGTCACACAGC
ACTCCAGTACAGGAGGAGCAGCGGCAGCATCTGGACCATTGCGCGAATAA
CCCCCGATGCCGTTGTTGCTGCCCGCCGCACGCCCTGTAGCAACCCGACA
CTCGACTGCTCTCTCACCTTCCCGTTCTCACACTTATCTTCCCACTCCAC
CAAGTAAGACAGTCAGCACCAGGCCGTATTTTAACTTTAGGAGTACCAAG
CCCCTCTGCTCCTTCGCCAACCTCCCCTTTCCTCATTATCAGACGCCAAA
CCCTAGTGTCAAACCAAAGCCCAAGCAAAATGCAGCACCCAAACCTGCGC
ATCGTCGTGGAAGGATGCTGTCATGGGGAGCTTGACCAGATCTACGCCTC
CATCGCCCGAATGGAACAAGAAAAAGGGCAGAAAATGGACCTTCTCATTT
GCTGCGGTGACTTCCAAGCGGTGCGCAATAAGGAAGACCTGAAGGCCATG
AACGTCCCGAGTAAGTACCTGACCATGGCCTCCTTCCATCGGTATTACAG
CGGAGAAGCCATCGCCCCGGTTTTGACCCTGTTCGTTGGCGGCAACCACG
AGGCATCCAACCACTTGCAAGAGCTGTACTATGGCGGGTGGGTCGCCCCC
AACATCTACTACCTTGGATGCTCTGGCGTGGTTTCTGTAGGCGGCGTACG
CATCGCGGGCATCTCCGGCATTTATAATGGACGAGACTACCGTCGTGGGC
ACTTCGAGACTCCGCCTTACTCTCCCAGCACTCTCCGTTCCATCTACCAC
GTCCGAGAATATGAAGTGTTCAAGCTTGCGCAACTCGCCGTGGGGACAAG
CAATGACGGCACCGGGAGCGCCGCACCGGTCGACGTAATGCTTTCGCATG
ACTGGCCTCGTGGCATATATCACCATGGAAATTTACCACAGCTGCTGCGG
ACTAAGCCTTACTTCCGACAGGAATGTGAGACGAACACTTTGGGAAGTGA
GGCTGGCGAGCTATTGCTCCAGCAACTTCAACCCTCTTTTTGGTTCGCGG
GGCATCTACACTGTAAATTTGCTGCTGTTGTGCGTCATCCCCACCAGCTA
CAGCAGCAGCAGCAGCAGCGCATGACGAAGTTTTTGGCGCTGGATAAGTG
TCTGCCGAACCGGGATTTTTTGCAGCTGGTGGAGGTGCCTCGCCCGAGGG
ACAATTGGGAGACACCGGTGCGATTAGAGTATGATTTGGAATGGCTGGCG
ATATTGAGATCTACACATTCATTGTTAAGTAGAGCAGAGAGGGAGGTTGT
GTTGCCGCAGGAGAGTAGGATGGTGTCGGGGGCAGATAAAGATTGGTGAG
TTGGAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAGATGAAGTATGAAGCGGGAAGAAATGTAAACGAGGCTCGTTCCACA
AGCCCTTTCTCTTTCGACATTCGATTTTAAATGAATAAAAACATTTGTAA
TCGACCTCTTTTCGACGTCTTTCACTTTCCTCAGGGTTCGGCAACGCCTC
ACCGCCGCCTGCCAAGCCCGCGGACAAGACCCGGCCAAGCATGCCCTGGA
AATCCCCCCTTCGTCCTTCGTTCGCACGGCGGCCGTCTACAGCCCCTCCC
ATCCTGCTGCTGCTGCTGGAGATGGCACCTTGCGAGGAAGCCCTCAAACA
GATGCCCTGCTCAAGCTTTTGGAGTTGAGCCATCGAGTCACGATTCCGTA
CACACACACGCCTCCTCTGCCGCACCTTTCGATGCGTGGGCAGCAGCAGC
AGCAGCAGGAGTCGCAGCAGCAGCAGCAGCAGCAGGAGGAGTCGCAGCAG
CAGGAAGAAGAGCAGAAGCAGCCGAGAGGCGGGGATAGTCTCTTTTTCCT
TGATCGCGGGGAGAAGGGTCGTGACCCGAATTCGATTGAGCTGGATGACG
AGGATGGGGGGGATGCTGCGGGGGAGGAGGAAGAAGAGGAGTGCGATGAT
GAGGTCGCGATGAGATATAAGGCGCAGCAGCAGCAGCAGCCGCAAGGCAA
GTCGGAGAATAAAGAGGAGGAGGACGTGATTGTGTTCAGAAGCGGGAGAA
GCCCACCCGTAGCAGCTACTGTTCCTGCTACTGCTGCTACTACTGCTACT
GCTGCTGCTGCAGCAGCACCACAAGCGGGAACGGCCTCTTCGCCGGCGCT
TCCCTTCCGACGTAAGCTCGTGCTGCCACCACCGTCAGCATCGTCATCGT
GAGGAAAAGTTCCAAAAAACAAGTAGAGAAAAAAGGATGAAAAAAATGAT
TGAAAGAATGTCCATCCATCCATACAAAG
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Coding sequence (CDS) from alignment at chr2:720277..722905+

>NO02G02590.1 ID=NO02G02590.1|Name=NO02G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr2:720277..722905+ (Nannochloropsis oceanica)
ATGCAGCACCCAAACCTGCGCATCGTCGTGGAAGGATGCTGTCATGGGGA
GCTTGACCAGATCTACGCCTCCATCGCCCGAATGGAACAAGAAAAAGGGC
AGAAAATGGACCTTCTCATTTGCTGCGGTGACTTCCAAGCGGTGCGCAAT
AAGGAAGACCTGAAGGCCATGAACGTCCCGAGTAAGTACCTGACCATGGC
CTCCTTCCATCGGTATTACAGCGGAGAAGCCATCGCCCCGGTTTTGACCC
TGTTCGTTGGCGGCAACCACGAGGCATCCAACCACTTGCAAGAGCTGTAC
TATGGCGGGTGGGTCGCCCCCAACATCTACTACCTTGGATGCTCTGGCGT
GGTTTCTGTAGGCGGCGTACGCATCGCGGGCATCTCCGGCATTTATAATG
GACGAGACTACCGTCGTGGGCACTTCGAGACTCCGCCTTACTCTCCCAGC
ACTCTCCGTTCCATCTACCACGTCCGAGAATATGAAGTGTTCAAGCTTGC
GCAACTCGCCGTGGGGACAAGCAATGACGGCACCGGGAGCGCCGCACCGG
TCGACGTAATGCTTTCGCATGACTGGCCTCGTGGCATATATCACCATGGA
AATTTACCACAGCTGCTGCGGACTAAGCCTTACTTCCGACAGGAATGTGA
GACGAACACTTTGGGAAGTGAGGCTGGCGAGCTATTGCTCCAGCAACTTC
AACCCTCTTTTTGGTTCGCGGGGCATCTACACTGTAAATTTGCTGCTGTT
GTGCGTCATCCCCACCAGCTACAGCAGCAGCAGCAGCAGCGCATGACGAA
GTTTTTGGCGCTGGATAAGTGTCTGCCGAACCGGGATTTTTTGCAGCTGG
TGGAGGTGCCTCGCCCGAGGGACAATTGGGAGACACCGGTGCGATTAGAG
TATGATTTGGAATGGCTGGCGATATTGAGATCTACACATTCATTGTTAAG
TAGAGCAGAGAGGGAGGTTGTGTTGCCGCAGGAGAGTAGGATGGTGTCGG
GGGCAGATAAAGATTGGGTTCGGCAACGCCTCACCGCCGCCTGCCAAGCC
CGCGGACAAGACCCGGCCAAGCATGCCCTGGAAATCCCCCCTTCGTCCTT
CGTTCGCACGGCGGCCGTCTACAGCCCCTCCCATCCTGCTGCTGCTGCTG
GAGATGGCACCTTGCGAGGAAGCCCTCAAACAGATGCCCTGCTCAAGCTT
TTGGAGTTGAGCCATCGAGTCACGATTCCGTACACACACACGCCTCCTCT
GCCGCACCTTTCGATGCGTGGGCAGCAGCAGCAGCAGCAGGAGTCGCAGC
AGCAGCAGCAGCAGCAGGAGGAGTCGCAGCAGCAGGAAGAAGAGCAGAAG
CAGCCGAGAGGCGGGGATAGTCTCTTTTTCCTTGATCGCGGGGAGAAGGG
TCGTGACCCGAATTCGATTGAGCTGGATGACGAGGATGGGGGGGATGCTG
CGGGGGAGGAGGAAGAAGAGGAGTGCGATGATGAGGTCGCGATGAGATAT
AAGGCGCAGCAGCAGCAGCAGCCGCAAGGCAAGTCGGAGAATAAAGAGGA
GGAGGACGTGATTGTGTTCAGAAGCGGGAGAAGCCCACCCGTAGCAGCTA
CTGTTCCTGCTACTGCTGCTACTACTGCTACTGCTGCTGCTGCAGCAGCA
CCACAAGCGGGAACGGCCTCTTCGCCGGCGCTTCCCTTCCGACGTAAGCT
CGTGCTGCCACCACCGTCAGCATCGTCATCGTGA
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Synonyms
Publications