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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:710966..713314 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02540.1 vs.
Match: EWM30392.1 (asparaginyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 877.9 bits (2267), Expect = 1.800e-251 Identity = 447/588 (76.02%), Postives = 500/588 (85.03%), Query Frame = 0
Query: 1 MFVGSRRGFSPCLCFNLTLLIIMTILSRIVLSAGPRHHV--AAFTAL--------SSTSRGQRHAPSS--RSSSFALPHTRRSPFSFAPATRQYATTTTTIPPTTTTSTTTEPARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGGLQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIEVIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATHKFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAIDYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKTLVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTEHERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGELIGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFERLVCYVTGVENIRDAIAFPRTPGSALF 577
M +G+R+G S C C +LT LI +T+ S + A RH AAF +L S TS + AP + ++ S P SP S +T Y +++T P T+T TT PAR+KVRDILI GDDSL+GQRVT+KGW RT+RSQKTFSFIE+NDGS+LGGLQ+VADAEKV YEA ++ IHTGAA+GVVG IK SPGKGQKYE++AE++EV+GGCDPE YPLQKKRHTLEFLRGIAHLRPRTNTLAAV+RVRS+LAFATH FFQ+QGFYYLQSPIITASDCEGAGEMFRVTTLPDKVS +PR + + D IDY+ DFFGAPA+LTVSGQLSGEAYACA+GDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADL+DNMRNAEAYVKAIV H+LKEC EDLAFFEKFYDKTL+ RLNTLVSE FARVEY EAVRLLQ EIAKD AW +P+V+FGTDLQTEHERWLCEK F RATFVYNYPR+IKAFYMRDNEDG+TVAAMDLLVPG+GELIGGSQREERL RLE KL+EFGLD+EDYWWYLDLRRFG VPHSGYGLGFERLVCYVTGVENIR+AIAFPRTPGSA F
Sbjct: 1 MVLGTRKGTSSCFCLSLTNLITVTMFSCAAI-ANSRHQAQTAAFGSLLAKVPTKSSRTSPRRLLAPCAFTQAPSCRPPRLLVSPVS--TSTTLYVSSSTAAPSTSTA--TTVPARLKVRDILINGDDSLIGQRVTVKGWTRTIRSQKTFSFIEINDGSSLGGLQVVADAEKVCDYEAVLSKIHTGAALGVVGVIKASPGKGQKYEVAAESVEVVGGCDPEAYPLQKKRHTLEFLRGIAHLRPRTNTLAAVARVRSALAFATHNFFQEQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSELPRVEGEEDRIDYSHDFFGAPAYLTVSGQLSGEAYACAMGDVYTFGPTFRAENSQTTRHLAEFNMIEPEMAFADLQDNMRNAEAYVKAIVRHVLKECEEDLAFFEKFYDKTLMARLNTLVSESFARVEYTEAVRLLQEEIAKDRGAWQFPDVDFGTDLQTEHERWLCEKKFQRATFVYNYPREIKAFYMRDNEDGKTVAAMDLLVPGVGELIGGSQREERLGRLEAKLEEFGLDKEDYWWYLDLRRFGSVPHSGYGLGFERLVCYVTGVENIREAIAFPRTPGSATF 583
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02540.1 ID=NO02G02540.1|Name=NO02G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2223bp GCGAGGCTGCTGACATGACAAGGAATTATGCGCTTAGTCATTACTCCATT TACAGAGCTGCATACACCTTACAGGTAGCCGCGTAAAGCGAAGCAAGGGA ATTGCCTCGACCACGTAGCCAGCTGGTTTGACCAGCAACCATTGGCACGC CCTCCTTGCCTTGCACCATGAGCGTCATCGTCGTGGGGTATCAATACAAT ACGATGATCGCATATCTAACGCTGGCGCTGCGTCCTCCATTACCACAGGT CTCCGGCTTGTTGCAGGGCGCAAGGAACGACACGGAGAAAGCTGAGCTCC CTCTTCACTCTCCCTCGGTGGCGGCAGCGCGGGTGCACGACTAAATTGGC CTTGCATCGATTGATTGACCTCCCCCCTTGGCGCGTCCCACTCTACGTGC CTTCATCCGAACACCTTCGGAAATGTTTGTGGGCAGTCGCAGGGGGTTCT CGCCTTGCTTGTGTTTTAATCTGACACTTTTAATCATCATGACAATTCTG TCACGCATCGTGCTTTCTGCCGGCCCCCGGCACCATGTAGCAGCGTTCAC TGCATTGTCCTCCACTTCAAGAGGCCAGCGCCACGCTCCTTCCTCTCGCT CCTCGTCTTTCGCCCTTCCTCACACCCGCCGGTCACCATTCTCCTTCGCA CCAGCAACGCGACAATACGCAACTACTACAACTACTATCCCTCCAACCAC CACCACCTCTACAACGACGGAGCCCGCCCGCATCAAAGTCCGCGACATCC TCATTAAAGGCGACGACTCCCTGCTCGGGCAACGCGTCACCATCAAAGGG TGGGTCCGCACGCTCCGTTCGCAAAAAACCTTCAGCTTTATTGAAGTTAA TGACGGCAGTACGCTCGGTGGGCTTCAGATAGTCGCGGACGCCGAAAAGG TCGCTGGGTACGAGGCAGCTATTGCAGGCATCCACACTGGTGCGGCAATT GGCGTGGTGGGGACGATCAAAGAATCACCGGGTAAAGGGCAAAAGTACGA AATTTCAGCAGAGACTATTGAGGTGATCGGTGGATGTGATCCGGAGACGT ATCCCTTGCAGAAGAAGAGGCATACTTTAGAGTTTTTGCGTGGCATCGCT CACTTGAGGCCACGGACTAACACTCTGGCGGCGGTGTCAAGAGTGAGATC GAGTTTAGCGTTTGCCACCCATAAATTTTTCCAGGATCAGGGATTTTATT ACTTGCAGAGTCCGATCATCACGGCTTCGGATTGCGAGGGGGCGGGGGAG ATGTTTCGGGTGACGACCTTGCCAGATAAAGTGTCGCTCATTCCAAGGAA GAAGGAGGACAGCGATGCGATCGATTACACGCAAGATTTTTTCGGGGCCC CTGCCTTTTTGACCGTGTCGGGCCAATTATCAGGCGAGGCTTATGCGTGT GCCCTTGGGGATGTGTACACGTTTGGGCCTACGTTTAGGGCGGAAAATAG TCAGACGACGCGGCATCTGGCGGAGTTCAACATGATTGAGCCCGAAATGG CCTTTGCAGATCTGAAGGACAACATGCGTAACGCCGAAGCGTATGTCAAG GCAATTGTCGGACATATCTTGAAGGAGTGTGGAGAGGATTTGGCGTTCTT TGAGAAGTTTTACGATAAGACGTTGGTTGGGCGGTTGAATACGCTGGTCT CCGAGCCCTTTGCCCGGGTGGAGTACAAGGAAGCCGTGCGTTTGTTGCAA GGAGAGATTGCCAAAGACGAGAGCGCGTGGGCTTACCCCGAGGTGGAATT TGGGACTGACCTACAGACGGAGCACGAACGGTGGTTGTGTGAGAAGCATT TCAACAGAGCAACATTTGTGTATAACTACCCAAGGAAAATAAAGGCTTTT TATATGAGGGATAATGAGGATGGGGAGACGGTGGCGGCGATGGACTTGCT GGTGCCGGGGATAGGGGAATTGATTGGGGGGTCACAGAGGGAGGAGCGGC TGGAGAGGCTGGAGGAGAAGTTGAAAGAATTTGGGCTGGACAGGGAGGAT TATTGGTGGTACTTGGATTTAAGGCGGTTTGGGGGAGTGCCGCACAGTGG GTACGGTTTGGGGTTTGAACGGTTGGTTTGTTATGTTACAGGGGTGGAGA ATATTAGGGATGCCATCGCCTTCCCGCGGACACCGGGAAGTGCGTTGTTT TAGAGAAGGAAGGAGATGCCGCGGACGAAGGAGGGAAAAAATTAAAATCA TACAAGACTTATATTGAGAAAAG back to topprotein sequence of NO02G02540.1 >NO02G02540.1-protein ID=NO02G02540.1-protein|Name=NO02G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp MFVGSRRGFSPCLCFNLTLLIIMTILSRIVLSAGPRHHVAAFTALSSTSR GQRHAPSSRSSSFALPHTRRSPFSFAPATRQYATTTTTIPPTTTTSTTTE PARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGG LQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIE VIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATH KFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAI DYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLA EFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKT LVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTE HERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGEL IGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFER LVCYVTGVENIRDAIAFPRTPGSALF* back to topmRNA from alignment at chr2:710966..713314+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02540.1 ID=NO02G02540.1|Name=NO02G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp|location=Sequence derived from alignment at chr2:710966..713314+ (Nannochloropsis oceanica) GCGAGGCTGCTGACATGACAAGGAATTATGCGCTTAGTCATTACTCCATT
TACAGAGCTGCATACACCTTACAGGTAGCCGCGTAAAGCGAAGCAAGGGA
ATTGCCTCGACCACGTAGCCAGCTGGTTTGACCAGCAACCATTGGCACGC
CCTCCTTGCCTTGCACCATGAGCGTCATCGTCGTGGGGTATCAATACAAT
ACGATGATCGCATATCTAACGCTGGCGCTGCGTCCTCCATTACCACAGGT
CTCCGGCTTGTTGCAGGGCGCAAGGAACGACACGGAGAAAGCTGAGCTCC
CTCTTCACTCTCCCTCGGTGGCGGCAGCGCGGGTGCACGACTAAATTGGC
CTTGCATCGATTGATTGACCTCCCCCCTTGGCGCGTCCCACTCTACGTGC
CTTCATCCGAACACCTTCGGAAATGTTTGTGGGCAGTCGCAGGGGGTTCT
CGCCTTGCTTGTGTTTTAATCTGACACTTTTAATCATCATGACAATTCTG
TCACGCATCGTGCTTTCTGCCGGCCCCCGGCACCATGTAGCAGCGTTCAC
TGCATTGTCCTCCACTTCAAGAGGCCAGCGCCACGCTCCTTCCTCTCGCT
CCTCGTCTTTCGCCCTTCCTCACACCCGCCGGTCACCATTCTCCTTCGCA
CCAGCAACGCGACAATACGCAACTACTACAACTACTATCCCTCCAACCAC
CACCACCTCTACAACGACGGAGCCCGCCCGCATCAAAGTCCGCGACATCC
TCATTAAAGGCGACGACTCCCTGCTCGGGCAACGCGTCACCATCAAAGGG
TGGGTCCGCACGCTCCGTTCGCAAAAAACCTTCAGCTTTATTGAAGTTAA
TGACGGCAGTACGCTCGGTGGGCTTCAGATAGTCGCGGACGCCGAAAAGG
TCGCTGGGTACGAGGCAGCTATTGCAGGCATCCACACTGGTGCGGCAATT
GGCGTGGTGGGGACGATCAAAGAATCACCGGGTAAAGGGCAAAAGTACGA
AATTTCAGCAGAGACTATTGAGGTGATCGGTGGATGTGATCCGGAGACGT
ATCCCTTGCAGAAGAAGAGGCATACTTTAGAGTTTTTGCGTGGCATCGCT
CACTTGAGGCCACGGACTAACACTCTGGCGGCGGTGTCAAGAGTGAGATC
GAGTTTAGCGTTTGCCACCCATAAATTTTTCCAGGATCAGGGATTTTATT
ACTTGCAGAGTCCGATCATCACGGCTTCGGATTGCGAGGGGGCGGGGGAG
ATGTTTCGGGTGACGACCTTGCCAGATAAAGTGTCGCTCATTCCAAGGAA
GAAGGAGGACAGCGATGCGATCGATTACACGCAAGATTTTTTCGGGGCCC
CTGCCTTTTTGACCGTGTCGGGCCAATTATCAGGCGAGGCTTATGCGTGT
GCCCTTGGGGATGTGTACACGTTTGGGCCTACGTTTAGGGCGGAAAATAG
TCAGACGACGCGGCATCTGGCGGAGTTCAACATGATTGAGCCCGAAATGG
CCTTTGCAGATCTGAAGGACAACATGCGTAACGCCGAAGCGTATGTCAAG
GCAATTGTCGGACATATCTTGAAGGAGTGTGGAGAGGATTTGGCGTTCTT
TGAGAAGTTTTACGATAAGACGTTGGTTGGGCGGTTGAATACGGTAAGGG
AGGGAGGGAGGGAGGGAAGGCACACGAGAGCAAATTAATGTCTATGTTTT
CTAATCCCTTCCGTTCCTGCAAAGTCAAGCGTTCCTCCCGCTCACACCTT
CCCCGATCACTACATGCAGCTGGTCTCCGAGCCCTTTGCCCGGGTGGAGT
ACAAGGAAGCCGTGCGTTTGTTGCAAGGAGAGATTGCCAAAGACGAGAGC
GCGTGGGCTTACCCCGAGGTGGAATTTGGGACTGACCTACAGACGGAGCA
CGAACGGTGGTTGTGTGAGAAGCATTTCAACAGAGCAACATTTGTGTATA
ACTACCCAAGGAAAATAAAGGCTTTTTATATGAGGGATAATGAGGATGGG
GAGACGGTGGCGGCGATGGACTTGCTGGTGCCGGGGATAGGGGAATTGAT
TGGGGGGTCACAGAGGGAGGAGCGGCTGGAGAGGCTGGAGGAGAAGTTGA
AAGAATTTGGGCTGGACAGGGAGGATTATTGGTGGTACTTGGATTTAAGG
CGGTTTGGGGGAGTGCCGCACAGTGGGTACGGTTTGGGGTTTGAACGGTT
GGTTTGTTATGTTACAGGGGTGGAGAATATTAGGGATGCCATCGCCTTCC
CGCGGACACCGGGAAGTGCGTTGTTTTAGAGAAGGAAGGAGATGCCGCGG
ACGAAGGAGGGAAAAAATTAAAATCATACAAGACTTATATTGAGAAAAG back to topCoding sequence (CDS) from alignment at chr2:710966..713314+ >NO02G02540.1 ID=NO02G02540.1|Name=NO02G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1731bp|location=Sequence derived from alignment at chr2:710966..713314+ (Nannochloropsis oceanica) ATGTTTGTGGGCAGTCGCAGGGGGTTCTCGCCTTGCTTGTGTTTTAATCT GACACTTTTAATCATCATGACAATTCTGTCACGCATCGTGCTTTCTGCCG GCCCCCGGCACCATGTAGCAGCGTTCACTGCATTGTCCTCCACTTCAAGA GGCCAGCGCCACGCTCCTTCCTCTCGCTCCTCGTCTTTCGCCCTTCCTCA CACCCGCCGGTCACCATTCTCCTTCGCACCAGCAACGCGACAATACGCAA CTACTACAACTACTATCCCTCCAACCACCACCACCTCTACAACGACGGAG CCCGCCCGCATCAAAGTCCGCGACATCCTCATTAAAGGCGACGACTCCCT GCTCGGGCAACGCGTCACCATCAAAGGGTGGGTCCGCACGCTCCGTTCGC AAAAAACCTTCAGCTTTATTGAAGTTAATGACGGCAGTACGCTCGGTGGG CTTCAGATAGTCGCGGACGCCGAAAAGGTCGCTGGGTACGAGGCAGCTAT TGCAGGCATCCACACTGGTGCGGCAATTGGCGTGGTGGGGACGATCAAAG AATCACCGGGTAAAGGGCAAAAGTACGAAATTTCAGCAGAGACTATTGAG GTGATCGGTGGATGTGATCCGGAGACGTATCCCTTGCAGAAGAAGAGGCA TACTTTAGAGTTTTTGCGTGGCATCGCTCACTTGAGGCCACGGACTAACA CTCTGGCGGCGGTGTCAAGAGTGAGATCGAGTTTAGCGTTTGCCACCCAT AAATTTTTCCAGGATCAGGGATTTTATTACTTGCAGAGTCCGATCATCAC GGCTTCGGATTGCGAGGGGGCGGGGGAGATGTTTCGGGTGACGACCTTGC CAGATAAAGTGTCGCTCATTCCAAGGAAGAAGGAGGACAGCGATGCGATC GATTACACGCAAGATTTTTTCGGGGCCCCTGCCTTTTTGACCGTGTCGGG CCAATTATCAGGCGAGGCTTATGCGTGTGCCCTTGGGGATGTGTACACGT TTGGGCCTACGTTTAGGGCGGAAAATAGTCAGACGACGCGGCATCTGGCG GAGTTCAACATGATTGAGCCCGAAATGGCCTTTGCAGATCTGAAGGACAA CATGCGTAACGCCGAAGCGTATGTCAAGGCAATTGTCGGACATATCTTGA AGGAGTGTGGAGAGGATTTGGCGTTCTTTGAGAAGTTTTACGATAAGACG TTGGTTGGGCGGTTGAATACGCTGGTCTCCGAGCCCTTTGCCCGGGTGGA GTACAAGGAAGCCGTGCGTTTGTTGCAAGGAGAGATTGCCAAAGACGAGA GCGCGTGGGCTTACCCCGAGGTGGAATTTGGGACTGACCTACAGACGGAG CACGAACGGTGGTTGTGTGAGAAGCATTTCAACAGAGCAACATTTGTGTA TAACTACCCAAGGAAAATAAAGGCTTTTTATATGAGGGATAATGAGGATG GGGAGACGGTGGCGGCGATGGACTTGCTGGTGCCGGGGATAGGGGAATTG ATTGGGGGGTCACAGAGGGAGGAGCGGCTGGAGAGGCTGGAGGAGAAGTT GAAAGAATTTGGGCTGGACAGGGAGGATTATTGGTGGTACTTGGATTTAA GGCGGTTTGGGGGAGTGCCGCACAGTGGGTACGGTTTGGGGTTTGAACGG TTGGTTTGTTATGTTACAGGGGTGGAGAATATTAGGGATGCCATCGCCTT CCCGCGGACACCGGGAAGTGCGTTGTTTTAG back to top
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