NO02G02440.1, NO02G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02440.1
Unique NameNO02G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2129
Alignment locationchr2:676792..679028 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:676792..679028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02440.1 vs.
Match: EWM30396.1 (phosphatidylinositol-4-phosphate 5-kinase its3 [Nannochloropsis gaditana])

HSP 1 Score: 346.7 bits (888), Expect = 1.200e-91
Identity = 206/318 (64.78%), Postives = 231/318 (72.64%), Query Frame = 0 
Query:  182 MSGEELRALTAILADYHTHMAANPRSLLVHYCGHYHVKLYREQTDEWEDIHFLVMRNLMTPPKEGLTVRELYDVKGSTVGRAASEKDKAKESGGILKDLDLMERQWPIDFGRERENFLRQMSRDVDFLRAKGVMDYSLLLGVCPVP--VGISGMARGLGNEGGKGGGFPSRMLNFFLGPPGGTGGGGGG--GEGGGGGGGGGGGNSQTGWVVVHPEGREVYVAGVIDVLQLYNRRKLAETLLKSVVYKREAISAVDPVLYAARFLQFVERIVQQQPQEGRQR--------QGVGGGWAPAKHQHQHQQPPPPPSSYWG 488
            MS EELRALTAILADY  HMA NP SLLVHYCGHYHV+LYRE+ DEW+D+HFLVMRNLMTPP+ GL+V+ELYDVKGSTVGRAAS+K++AK S  ILKDLDLMER WPIDFG +RE FL QM+ DV+FLRAKGVMDYSLLLGVCP P    + G++         G GFP RML++FLGPP   G G  G  G      GG GG  SQ GWVVVHP+GREVYV GVIDVLQLYNRRK AETLLKSV+YKR AISAVDP  YAARF  FVE IV Q  Q  +Q         Q        A+H+   QQ P  PS++ G
Sbjct:    1 MSDEELRALTAILADYQRHMADNPHSLLVHYCGHYHVRLYRERADEWDDVHFLVMRNLMTPPQAGLSVQELYDVKGSTVGRAASQKERAKAS-AILKDLDLMERAWPIDFGDQREAFLGQMASDVEFLRAKGVMDYSLLLGVCPAPSAAAVRGLSSVSKTGAPSGQGFPQRMLSYFLGPPPSQGHGKEGLLGNQRAAAGGRGGVESQGGWVVVHPQGREVYVVGVIDVLQLYNRRKQAETLLKSVLYKRTAISAVDPGTYAARFSHFVEGIVHQHFQHQQQHYHHQQQQFQQQQEQEQQARHRPHLQQEPGQPSAHDG 317
The following BLAST results are available for this feature:
BLAST of NO02G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30396.11.200e-9164.78phosphatidylinositol-4-phosphate 5-kinase its3 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02440NO02G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02440.1NO02G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02440.1.cds1NO02G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02440.1.cds2NO02G02440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02440.1 ID=NO02G02440.1|Name=NO02G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2129bp
AACACACAGGCAGTGTAGCGACATCGATCAAGCCCTCGTTGCCTTGCCCC
TGACCACCTGCATCGCGGGCCCAACCAGAAAATCAACCATCCCTACGGCC
CTGCCTCCCCACCACTGTCACCCTCCCAGCAGCGCCATGACAAGAGGCGA
CACCCTCGTAGCGCTGCCTTTCATGGCGCTCATTCTGGCCACTTTTGCTC
GTCACAATACCCTGCCATTCCAGAAGCGCGGCGGCCTCTTGCAGACGTCG
GGCCAGTACCATTACCAACAGCAGCAGCACCAACCAACCCAGCTGCCATC
ACCACCAGATGAGGCTGGGGGTCCAGTGCCCCCCCCTCCGCTGCCCGATG
CCATGGTGCGGGAAGGGGACACGTACCACTTGCCTCTTGCTGCGCTGCGG
CATGGTCTCAGGGACGCCTTGGCTTGGAATGAAGCTCTCGCATTAAATAA
CCCCATCCCCGGCACCCACCCTCCGCCCGACTTCCTGATCCGCGCCAGGG
CCTCCTTCTTCTTTGGCGAAAGCAACGGCACCACATTCTCCGCCCTTCGT
GATCTCTACGGGCTCGGCACGCGCGAATACCTCTCTTCCCTCGAATCTGG
TTTCGAGGTATTCGCCTCCAATAGCAAATCCCGTCAGTTTTTCTGCTTTA
CAGGCGATAAGAAATTTATCATAAAAACAATGAGTGGGGAGGAGCTCCGA
GCACTGACTGCAATCCTGGCAGACTACCACACCCACATGGCGGCCAACCC
GAGGTCCCTCCTCGTTCATTACTGTGGTCACTATCATGTGAAGCTCTATC
GGGAGCAGACAGACGAATGGGAGGATATCCATTTTTTGGTGATGCGGAAT
TTGATGACCCCCCCAAAGGAAGGCCTTACTGTGCGAGAGCTTTATGACGT
GAAGGGCTCAACTGTTGGTCGGGCAGCCTCAGAGAAAGACAAGGCGAAGG
AATCAGGAGGGATATTGAAGGATTTAGACTTAATGGAACGACAGTGGCCC
ATTGATTTCGGGCGGGAAAGGGAGAATTTCCTCAGGCAAATGAGCAGAGA
TGTCGACTTCCTGAGGGCTAAGGGAGTCATGGATTATAGCCTTTTATTGG
GTGTGTGTCCTGTCCCTGTGGGAATATCGGGAATGGCACGGGGGTTAGGG
AATGAAGGAGGAAAAGGAGGTGGGTTTCCTTCGCGGATGTTGAATTTTTT
CTTGGGACCACCGGGAGGGACAGGAGGAGGAGGAGGAGGAGGAGAAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACTCGCAGACGGGATGGGTG
GTGGTGCATCCGGAGGGGAGGGAGGTATATGTGGCGGGGGTGATTGATGT
GTTGCAGCTGTATAATCGGAGGAAGTTGGCGGAGACATTGCTCAAATCTG
TGGTGTATAAACGAGAGGCGATCTCAGCGGTGGATCCGGTACTGTACGCG
GCTAGATTCCTACAGTTTGTGGAGCGGATCGTACAGCAACAGCCGCAGGA
GGGGCGGCAGAGGCAAGGTGTAGGAGGAGGGTGGGCACCCGCCAAGCACC
AGCACCAGCACCAGCAACCACCACCACCACCGTCGTCGTACTGGGGGGCG
TGAGGAAGAGGACGAGGACGAGGACGACAAAGGAGGGGGTTGGTGGAGCT
AGGTGTTAATAAAATGATAGTGAGGAGGAGGAGAATGCTGATGGAGGGAT
GACTGGAGAGGGAGGACTGCTTTATGTCTTGCCCCTTACTCTTTACCTCG
CCCGCAAAAAATGTACCTCTGTAAAATAACGAGAACGGAAAATTCACCCA
CGACGACATAAGTGCCACGCATGGGTATGATAAATGCGGCGATAGCTGAA
AGATGTGGATTATTTGATTCTCTTTCATTTCCTAAAATTGTTTTCTCACT
GCACTATTTACATGCTCCTCCCTTTCCCCTCCTTCGTTATCTCCCTCAGT
CTTCCTAATCGATCGCCGGGTTTTTCTCGAAATTTTTGACTGCAAACGAA
CTCCCACATCCACATGCCGATTCCGACAGAGGGTTATTCACTACTGCAAA
TGCGCTTCGCATCATATCCTCCGTGAAATCCACCGTCGCGCCCTTGACAA
ATTCCAGTGACCCCTCATCTATTACCAAT
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protein sequence of NO02G02440.1

>NO02G02440.1-protein ID=NO02G02440.1-protein|Name=NO02G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MTRGDTLVALPFMALILATFARHNTLPFQKRGGLLQTSGQYHYQQQQHQP
TQLPSPPDEAGGPVPPPPLPDAMVREGDTYHLPLAALRHGLRDALAWNEA
LALNNPIPGTHPPPDFLIRARASFFFGESNGTTFSALRDLYGLGTREYLS
SLESGFEVFASNSKSRQFFCFTGDKKFIIKTMSGEELRALTAILADYHTH
MAANPRSLLVHYCGHYHVKLYREQTDEWEDIHFLVMRNLMTPPKEGLTVR
ELYDVKGSTVGRAASEKDKAKESGGILKDLDLMERQWPIDFGRERENFLR
QMSRDVDFLRAKGVMDYSLLLGVCPVPVGISGMARGLGNEGGKGGGFPSR
MLNFFLGPPGGTGGGGGGGEGGGGGGGGGGGNSQTGWVVVHPEGREVYVA
GVIDVLQLYNRRKLAETLLKSVVYKREAISAVDPVLYAARFLQFVERIVQ
QQPQEGRQRQGVGGGWAPAKHQHQHQQPPPPPSSYWGA*
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mRNA from alignment at chr2:676792..679028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02440.1 ID=NO02G02440.1|Name=NO02G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp|location=Sequence derived from alignment at chr2:676792..679028+ (Nannochloropsis oceanica)
AACACACAGGCAGTGTAGCGACATCGATCAAGCCCTCGTTGCCTTGCCCC
TGACCACCTGCATCGCGGGCCCAACCAGAAAATCAACCATCCCTACGGCC
CTGCCTCCCCACCACTGTCACCCTCCCAGCAGCGCCATGACAAGAGGCGA
CACCCTCGTAGCGCTGCCTTTCATGGCGCTCATTCTGGCCACTTTTGCTC
GTCACAATACCCTGCCATTCCAGAAGCGCGGCGGCCTCTTGCAGACGTCG
GGCCAGTACCATTACCAACAGCAGCAGCACCAACCAACCCAGCTGCCATC
ACCACCAGATGAGGCTGGGGGTCCAGTGCCCCCCCCTCCGCTGCCCGATG
CCATGGTGCGGGAAGGGGACACGTACCACTTGCCTCTTGCTGCGCTGCGG
CATGGTCTCAGGGACGCCTTGGCTTGGAATGAAGTACGTGGGTGTGGTTG
CTTTGCATGCTTTGTCGCAAGTCTTGCTCGGAAGGTTCCATCCGCCCATT
CACCTCCTCCTGCTTCCCCTTTCCCTTCCTTTCAAAAATAGGCTCTCGCA
TTAAATAACCCCATCCCCGGCACCCACCCTCCGCCCGACTTCCTGATCCG
CGCCAGGGCCTCCTTCTTCTTTGGCGAAAGCAACGGCACCACATTCTCCG
CCCTTCGTGATCTCTACGGGCTCGGCACGCGCGAATACCTCTCTTCCCTC
GAATCTGGTTTCGAGGTATTCGCCTCCAATAGCAAATCCCGTCAGTTTTT
CTGCTTTACAGGCGATAAGAAATTTATCATAAAAACAATGAGTGGGGAGG
AGCTCCGAGCACTGACTGCAATCCTGGCAGACTACCACACCCACATGGCG
GCCAACCCGAGGTCCCTCCTCGTTCATTACTGTGGTCACTATCATGTGAA
GCTCTATCGGGAGCAGACAGACGAATGGGAGGATATCCATTTTTTGGTGA
TGCGGAATTTGATGACCCCCCCAAAGGAAGGCCTTACTGTGCGAGAGCTT
TATGACGTGAAGGGCTCAACTGTTGGTCGGGCAGCCTCAGAGAAAGACAA
GGCGAAGGAATCAGGAGGGATATTGAAGGATTTAGACTTAATGGAACGAC
AGTGGCCCATTGATTTCGGGCGGGAAAGGGAGAATTTCCTCAGGCAAATG
AGCAGAGATGTCGACTTCCTGAGGGCTAAGGGAGTCATGGATTATAGCCT
TTTATTGGGTGTGTGTCCTGTCCCTGTGGGAATATCGGGAATGGCACGGG
GGTTAGGGAATGAAGGAGGAAAAGGAGGTGGGTTTCCTTCGCGGATGTTG
AATTTTTTCTTGGGACCACCGGGAGGGACAGGAGGAGGAGGAGGAGGAGG
AGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACTCGCAGACGG
GATGGGTGGTGGTGCATCCGGAGGGGAGGGAGGTATATGTGGCGGGGGTG
ATTGATGTGTTGCAGCTGTATAATCGGAGGAAGTTGGCGGAGACATTGCT
CAAATCTGTGGTGTATAAACGAGAGGCGATCTCAGCGGTGGATCCGGTAC
TGTACGCGGCTAGATTCCTACAGTTTGTGGAGCGGATCGTACAGCAACAG
CCGCAGGAGGGGCGGCAGAGGCAAGGTGTAGGAGGAGGGTGGGCACCCGC
CAAGCACCAGCACCAGCACCAGCAACCACCACCACCACCGTCGTCGTACT
GGGGGGCGTGAGGAAGAGGACGAGGACGAGGACGACAAAGGAGGGGGTTG
GTGGAGCTAGGTGTTAATAAAATGATAGTGAGGAGGAGGAGAATGCTGAT
GGAGGGATGACTGGAGAGGGAGGACTGCTTTATGTCTTGCCCCTTACTCT
TTACCTCGCCCGCAAAAAATGTACCTCTGTAAAATAACGAGAACGGAAAA
TTCACCCACGACGACATAAGTGCCACGCATGGGTATGATAAATGCGGCGA
TAGCTGAAAGATGTGGATTATTTGATTCTCTTTCATTTCCTAAAATTGTT
TTCTCACTGCACTATTTACATGCTCCTCCCTTTCCCCTCCTTCGTTATCT
CCCTCAGTCTTCCTAATCGATCGCCGGGTTTTTCTCGAAATTTTTGACTG
CAAACGAACTCCCACATCCACATGCCGATTCCGACAGAGGGTTATTCACT
ACTGCAAATGCGCTTCGCATCATATCCTCCGTGAAATCCACCGTCGCGCC
CTTGACAAATTCCAGTGACCCCTCATCTATTACCAAT
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Coding sequence (CDS) from alignment at chr2:676792..679028+

>NO02G02440.1 ID=NO02G02440.1|Name=NO02G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr2:676792..679028+ (Nannochloropsis oceanica)
ATGACAAGAGGCGACACCCTCGTAGCGCTGCCTTTCATGGCGCTCATTCT
GGCCACTTTTGCTCGTCACAATACCCTGCCATTCCAGAAGCGCGGCGGCC
TCTTGCAGACGTCGGGCCAGTACCATTACCAACAGCAGCAGCACCAACCA
ACCCAGCTGCCATCACCACCAGATGAGGCTGGGGGTCCAGTGCCCCCCCC
TCCGCTGCCCGATGCCATGGTGCGGGAAGGGGACACGTACCACTTGCCTC
TTGCTGCGCTGCGGCATGGTCTCAGGGACGCCTTGGCTTGGAATGAAGCT
CTCGCATTAAATAACCCCATCCCCGGCACCCACCCTCCGCCCGACTTCCT
GATCCGCGCCAGGGCCTCCTTCTTCTTTGGCGAAAGCAACGGCACCACAT
TCTCCGCCCTTCGTGATCTCTACGGGCTCGGCACGCGCGAATACCTCTCT
TCCCTCGAATCTGGTTTCGAGGTATTCGCCTCCAATAGCAAATCCCGTCA
GTTTTTCTGCTTTACAGGCGATAAGAAATTTATCATAAAAACAATGAGTG
GGGAGGAGCTCCGAGCACTGACTGCAATCCTGGCAGACTACCACACCCAC
ATGGCGGCCAACCCGAGGTCCCTCCTCGTTCATTACTGTGGTCACTATCA
TGTGAAGCTCTATCGGGAGCAGACAGACGAATGGGAGGATATCCATTTTT
TGGTGATGCGGAATTTGATGACCCCCCCAAAGGAAGGCCTTACTGTGCGA
GAGCTTTATGACGTGAAGGGCTCAACTGTTGGTCGGGCAGCCTCAGAGAA
AGACAAGGCGAAGGAATCAGGAGGGATATTGAAGGATTTAGACTTAATGG
AACGACAGTGGCCCATTGATTTCGGGCGGGAAAGGGAGAATTTCCTCAGG
CAAATGAGCAGAGATGTCGACTTCCTGAGGGCTAAGGGAGTCATGGATTA
TAGCCTTTTATTGGGTGTGTGTCCTGTCCCTGTGGGAATATCGGGAATGG
CACGGGGGTTAGGGAATGAAGGAGGAAAAGGAGGTGGGTTTCCTTCGCGG
ATGTTGAATTTTTTCTTGGGACCACCGGGAGGGACAGGAGGAGGAGGAGG
AGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACTCGC
AGACGGGATGGGTGGTGGTGCATCCGGAGGGGAGGGAGGTATATGTGGCG
GGGGTGATTGATGTGTTGCAGCTGTATAATCGGAGGAAGTTGGCGGAGAC
ATTGCTCAAATCTGTGGTGTATAAACGAGAGGCGATCTCAGCGGTGGATC
CGGTACTGTACGCGGCTAGATTCCTACAGTTTGTGGAGCGGATCGTACAG
CAACAGCCGCAGGAGGGGCGGCAGAGGCAAGGTGTAGGAGGAGGGTGGGC
ACCCGCCAAGCACCAGCACCAGCACCAGCAACCACCACCACCACCGTCGT
CGTACTGGGGGGCGTGA
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Synonyms
Publications