NO02G02400.3, NO02G02400.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02400.3
Unique NameNO02G02400.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2401
Alignment locationchr2:664812..667576 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:664812..667576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02400.3 vs.
Match: WP_045053473.1 (NAD(P)/FAD-dependent oxidoreductase [Aliterella atlantica]; KJH72858.1 carotene isomerase [Aliterella atlantica CENA595])

HSP 1 Score: 461.1 bits (1185), Expect = 4.900e-126
Identity = 240/479 (50.10%), Postives = 313/479 (65.34%), Query Frame = 0 
Query:   66 DVETDVVVIGSGIGGLSCAALLAYYGEDVRVYESHYHAGGCAHGFEIDGFHFDSGPSLWNGMGCKEKGKRNPLGDILSVVGEGDTVKYAKYKGWGMYVPEGNFVFEVGPTAFEKVVREFGGGEAAVEEWRAFLTSLGTLTKISTAMTPLALRADIGAIFTVGRFLPSLARAGFSPA-VTGPILDVAKKTLKNPFLINWIEFLSFAISGLPADSTIAAAMAYTLRDLHMEGAELDYPVGGSAAVVDALIHAINKHAQTKHPQPAETAERITLSAHVEKIILENGRAVGIQLRKGGKRVRARKAVVSNASIWDTLKLLPPESLPVEEISSLTDTPMTGSFMHLHLGIDATGLPADLECHHTVINTWDK-IDAPQNMAIISIPTTLDPGLAPPGHHVLHCYAAANEPYEPWEGLKPNSPEYLALKKERAEWLWRAVERVIPDVRQRVKVEMVASPLTHERFLRRSRGTYGAGWRAGKESFPG 543
            D   +V+VIGSGIGGLSCAALLA YG DV V ESH  AGG AH FE  GF FDSGPSL++GM        NPL  +L  +GE   + +A Y  WG  +PEG+F   VG   F +++  F G +A V EWR     +  L K    + P A+R D+GA+ +VG+F P+L       A +TGP   +   T+ +PF+ NW+  L F +SGLPAD T AA MA+   D +  G  LDYP+GGS A+VDAL+  + +H             ++ L+AHVE++++EN RAVG+QLR GG  VRAR+A+VSN SIWDTLKLLP E++P  ++ +   TP   SFMHLHLGIDAT + +DL CH+ V+N W+  + APQN+ + SIP+ LDP LAPPG HV+H Y   NEPY  W+G+  +S EY   K ERAE +W+A+ER IPD+R R +V +V +PLTHER+LRR RG+YG   RAGKE FPG
Sbjct:    4 DANPEVIVIGSGIGGLSCAALLARYGIDVVVCESHSIAGGAAHAFERQGFKFDSGPSLYSGMSYSPSA--NPLRQVLDAIGED--ISWATYDTWGCCLPEGDFDTSVGSEQFCEILARFCGNDA-VREWRGLQRVMEPLVKAVLTLPPTAVRFDLGALVSVGKFAPALLTHAVDIAKLTGPFARIMNDTVSDPFIHNWLNLLCFLLSGLPADGTSAAEMAFMFADWYRGGTVLDYPIGGSGALVDALVRGLERHGG-----------KLMLNAHVEQVLVENNRAVGVQLR-GGNVVRARRAIVSNTSIWDTLKLLPSEAIP--KLQARQATPECDSFMHLHLGIDATDIRSDLACHYIVVNNWESGVTAPQNVVVASIPSVLDPSLAPPGKHVVHVYTPGNEPYSVWQGMDRSSQEYKKQKLERAEVMWQALERFIPDIRSRTQVTLVGTPLTHERYLRRHRGSYGPAIRAGKELFPG 463
The following BLAST results are available for this feature:
BLAST of NO02G02400.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_045053473.14.900e-12650.10NAD(P)/FAD-dependent oxidoreductase [Aliterella at... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02400NO02G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02400.3NO02G02400.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02400.3.cds1NO02G02400.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02400.3.cds2NO02G02400.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02400.3.cds3NO02G02400.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02400.3 ID=NO02G02400.3|Name=NO02G02400.3|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
GGCCAACATGAGGCCTTATCGATCTCGAGAACAAGCAAGAACCCAAGGCT
ATGTGAAAACGTAGGTGGGCCATTTTCAACGCATCCTACGCACCCTCTCG
CCGACGAATGAGTGGGAAAGGTCATATTATGATGAGGTGGCGGGGTGCGA
CTACGACCAAGCGCGTGGCTGTCTTGCCCTCGGACTCGAGTGTTTGGAGG
ACAGACAGCACTGCCTGCGGAGTCGTCAACTCTCCTGGAAGGGATTGTGG
CGAGGAGTGGATTGCTTGACCGCTCTTTCTTTCACGCAGGCATATCCCCC
GTACACACCACTTGCAGGTTACTGAGTAGTGCCATGCCGCTGTCGATTCC
CTTCCTGCTGCTGTTCTGTAGCCTTGCCGTCAGCGGTACCTCCGCATTTC
TAGTTTTGCCCCTCTCCTCACGGTTGCCATCCTCTTCTGCTCGCCATGTC
CGCCAAATTGTTACCTCCTCCCCCCCATGCACCTCGGTCGCCGCGACCGT
TGCAACCACTGACACCTCGGGAGAGTGGGATGTGGAGACGGACGTGGTTG
TAATTGGCAGCGGCATTGGTGGCTTGAGCTGTGCGGCACTTTTGGCATAC
TACGGTGAAGATGTAAGAGTATACGAGTCACATTATCACGCGGGCGGCTG
TGCCCACGGCTTCGAGATAGACGGCTTTCACTTCGACTCCGGCCCAAGCT
TGTGGAATGGGATGGGATGCAAAGAAAAAGGCAAGCGCAACCCTTTGGGA
GATATTTTGAGCGTAGTGGGCGAAGGCGACACGGTTAAGTACGCTAAATA
CAAGGGCTGGGGAATGTATGTTCCGGAAGGCAACTTTGTTTTCGAGGTCG
GCCCGACAGCTTTTGAGAAGGTTGTGCGAGAGTTTGGGGGGGGCGAGGCA
GCGGTGGAGGAATGGAGGGCATTCCTGACAAGCTTGGGGACGCTTACGAA
GATCTCGACAGCAATGACTCCCTTGGCCCTCCGTGCAGACATTGGGGCAA
TTTTTACGGTGGGGCGTTTCTTGCCTTCACTGGCCAGGGCTGGGTTCTCT
CCGGCAGTCACTGGACCTATCTTGGATGTGGCCAAAAAGACGTTGAAAAA
TCCGTTTTTGATCAATTGGATCGAGTTTTTGTCGTTTGCGATTTCAGGCT
TGCCTGCCGATTCAACTATTGCTGCGGCTATGGCGTACACGTTGAGGGAT
TTGCACATGGAAGGCGCTGAGCTCGACTACCCCGTAGGAGGCAGCGCCGC
TGTTGTAGACGCCCTTATCCACGCCATCAACAAGCATGCCCAAACCAAAC
ACCCGCAACCCGCCGAAACCGCAGAACGAATCACACTCAGCGCCCACGTT
GAAAAAATCATTCTTGAAAACGGTCGGGCGGTCGGGATCCAACTACGCAA
AGGTGGGAAACGCGTACGGGCCCGCAAAGCCGTCGTTTCCAATGCCAGCA
TATGGGACACTCTGAAACTTCTTCCCCCCGAAAGCCTCCCCGTCGAGGAA
ATATCCAGCTTGACAGACACTCCTATGACTGGTTCCTTCATGCATCTCCA
TCTAGGCATCGATGCCACAGGTTTACCGGCCGACTTGGAATGCCACCACA
CCGTCATAAACACATGGGACAAAATCGATGCTCCTCAAAATATGGCCATC
ATCTCAATCCCCACCACCCTCGATCCGGGCCTTGCACCCCCCGGGCATCA
CGTCCTGCATTGCTATGCTGCCGCGAACGAACCTTACGAGCCATGGGAGG
GCCTGAAACCAAACAGTCCCGAATACCTTGCCTTGAAGAAAGAACGGGCC
GAGTGGTTGTGGAGGGCCGTGGAACGCGTTATTCCTGATGTGAGGCAACG
GGTGAAGGTAGAGATGGTTGCGAGCCCCTTGACGCATGAGCGGTTTTTGC
GGCGTTCGAGAGGGACCTATGGCGCTGGGTGGCGGGCGGGGAAGGAGTCA
TTTCCTGGGTAAGAGGGGAGGACGGAGGACGGGGGAGGAGGAAGCTTGCA
TATTTTCTTGGTCAGGCGGGTGGAGAGTTCGATAAGCATACATTGTTGAT
GCAATTTTCTTACTTGTATATCTATTTCTATTTACGCTCATGCACAGGCC
CAAGAACATCAATGTCAAGGGCTTGTACAGTTGTGGTGATTCAACCTTTC
CAGGGATCGGTGTACCGGCAGTTGCAGCGTCTGGAGCGAATGGTACGTCA
AGACTTAGTAAGAGATTGGTATCCCCCTCATTCCTCTTATTATCAAAAGC
TGTCCCACACCCATAAACAGCCGCCAACACCATAGTACCCTTCTGGAAAC
ACTACGGCATGCTCACCCAGCTTATTAACGAGTAGCAGCGGCAGAGGAAA
TATACAGGGGGAAATCATCTCAAGAGAAAGAACCAAAGCACACAGATAGA
C
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protein sequence of NO02G02400.3

>NO02G02400.3-protein ID=NO02G02400.3-protein|Name=NO02G02400.3|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MPLSIPFLLLFCSLAVSGTSAFLVLPLSSRLPSSSARHVRQIVTSSPPCT
SVAATVATTDTSGEWDVETDVVVIGSGIGGLSCAALLAYYGEDVRVYESH
YHAGGCAHGFEIDGFHFDSGPSLWNGMGCKEKGKRNPLGDILSVVGEGDT
VKYAKYKGWGMYVPEGNFVFEVGPTAFEKVVREFGGGEAAVEEWRAFLTS
LGTLTKISTAMTPLALRADIGAIFTVGRFLPSLARAGFSPAVTGPILDVA
KKTLKNPFLINWIEFLSFAISGLPADSTIAAAMAYTLRDLHMEGAELDYP
VGGSAAVVDALIHAINKHAQTKHPQPAETAERITLSAHVEKIILENGRAV
GIQLRKGGKRVRARKAVVSNASIWDTLKLLPPESLPVEEISSLTDTPMTG
SFMHLHLGIDATGLPADLECHHTVINTWDKIDAPQNMAIISIPTTLDPGL
APPGHHVLHCYAAANEPYEPWEGLKPNSPEYLALKKERAEWLWRAVERVI
PDVRQRVKVEMVASPLTHERFLRRSRGTYGAGWRAGKESFPG*
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mRNA from alignment at chr2:664812..667576+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02400.3 ID=NO02G02400.3|Name=NO02G02400.3|organism=Nannochloropsis oceanica|type=mRNA|length=2765bp|location=Sequence derived from alignment at chr2:664812..667576+ (Nannochloropsis oceanica)
GGCCAACATGAGGCCTTATCGATCTCGAGAACAAGCAAGAACCCAAGGCT
ATGTGAAAACGTAGGTGGGCCATTTTCAACGCATCCTACGCACCCTCTCG
CCGACGAATGAGTGGGAAAGGTCATATTATGATGAGGTGGCGGGGTGCGA
CTACGACCAAGCGCGTGGCTGTCTTGCCCTCGGACTCGAGTGTTTGGAGG
ACAGACAGCACTGCCTGCGGAGTCGTCAACTCTCCTGGAAGGGATTGTGG
CGAGGAGTGGATTGCTTGACCGCTCTTTCTTTCACGCAGGCATATCCCCC
GTACACACCACTTGCAGGTTACTGAGTAGTGCCATGCCGCTGTCGATTCC
CTTCCTGCTGCTGTTCTGTAGCCTTGCCGTCAGCGGTACCTCCGCATTTC
TAGTTTTGCCCCTCTCCTCACGGTTGCCATCCTCTTCTGCTCGCCATGTC
CGCCAAATTGTTACCTCCTCCCCCCCATGCACCTCGGTCGCCGCGACCGT
TGCAACCACTGACACCTCGGGAGAGTGGGATGTGGAGACGGACGTGGTTG
TAATTGGCAGCGGCATTGGTGGCTTGAGCTGTGCGGCACTTTTGGCATAC
TACGGTGAAGATGTAAGAGTATACGAGTCACATTATCACGCGGGCGGCTG
TGCCCACGGCTTCGAGATAGACGGCTTTCACTTCGACTCCGGCCCAAGCT
TGTGGAATGGGATGGGATGGTAAGTAAACGCCTTTAAGTGGGCGTCCACG
TGAATTTTCTCGCTTAGAATTCCCCACTTTGCTGTTCTCATTCATCCTCC
CTTGCTTGTCCCTAAACCCTATTCCAAACAGCAAAGAAAAAGGCAAGCGC
AACCCTTTGGGAGATATTTTGAGCGTAGTGGGCGAAGGCGACACGGTTAA
GTACGCTAAATACAAGGGCTGGGGAATGTATGTTCCGGAAGGCAACTTTG
TTTTCGAGGTCGGCCCGACAGCTTTTGAGAAGGTTGTGCGAGAGTTTGGG
GGGGGCGAGGCAGCGGTGGAGGAATGGAGGGCATTCCTGACAAGCTTGGG
GACGCTTACGAAGATCTCGACAGCAATGACTCCCTTGGCCCTCCGTGCAG
ACATTGGGGCAATTTTTACGGTGGGGCGTTTCTTGCCTTCACTGGCCAGG
GCTGGGTTCTCTCCGGCAGTCACTGGACCTATCTTGGATGTGGCCAAAAA
GACGTTGAAAAATCCGTTTTTGATCAATTGGATCGAGTTTTTGTCGTTTG
CGATTTCAGGCTTGCCTGCCGATTCAACTATTGCTGCGGCTATGGCGTAC
ACGTTGAGGGATTTGCACATGGAAGGTTCGTAGTTTGTCTTGATTCGAGG
TTGATAGGGGGTGGGGAAGGGGAGCTTGTAGGGGGAAGGGGAAGTTGTCG
TTGTCTATCACGATTCTCACGATTCTAATTTCCTCATTATTTTTTATCCT
CTTGACTCACTCATTCATCCACTGGTCTGCATCCCTCTTTTCATTCTTTT
TTTTCCTAGGCTACTATCTCATTTATCACCCCAACTCTGTTCCCCTCAAA
ATCCTAAAAACTACAAAAACATACCAGGCGCTGAGCTCGACTACCCCGTA
GGAGGCAGCGCCGCTGTTGTAGACGCCCTTATCCACGCCATCAACAAGCA
TGCCCAAACCAAACACCCGCAACCCGCCGAAACCGCAGAACGAATCACAC
TCAGCGCCCACGTTGAAAAAATCATTCTTGAAAACGGTCGGGCGGTCGGG
ATCCAACTACGCAAAGGTGGGAAACGCGTACGGGCCCGCAAAGCCGTCGT
TTCCAATGCCAGCATATGGGACACTCTGAAACTTCTTCCCCCCGAAAGCC
TCCCCGTCGAGGAAATATCCAGCTTGACAGACACTCCTATGACTGGTTCC
TTCATGCATCTCCATCTAGGCATCGATGCCACAGGTTTACCGGCCGACTT
GGAATGCCACCACACCGTCATAAACACATGGGACAAAATCGATGCTCCTC
AAAATATGGCCATCATCTCAATCCCCACCACCCTCGATCCGGGCCTTGCA
CCCCCCGGGCATCACGTCCTGCATTGCTATGCTGCCGCGAACGAACCTTA
CGAGCCATGGGAGGGCCTGAAACCAAACAGTCCCGAATACCTTGCCTTGA
AGAAAGAACGGGCCGAGTGGTTGTGGAGGGCCGTGGAACGCGTTATTCCT
GATGTGAGGCAACGGGTGAAGGTAGAGATGGTTGCGAGCCCCTTGACGCA
TGAGCGGTTTTTGCGGCGTTCGAGAGGGACCTATGGCGCTGGGTGGCGGG
CGGGGAAGGAGTCATTTCCTGGGTAAGAGGGGAGGACGGAGGACGGGGGA
GGAGGAAGCTTGCATATTTTCTTGGTCAGGCGGGTGGAGAGTTCGATAAG
CATACATTGTTGATGCAATTTTCTTACTTGTATATCTATTTCTATTTACG
CTCATGCACAGGCCCAAGAACATCAATGTCAAGGGCTTGTACAGTTGTGG
TGATTCAACCTTTCCAGGGATCGGTGTACCGGCAGTTGCAGCGTCTGGAG
CGAATGGTACGTCAAGACTTAGTAAGAGATTGGTATCCCCCTCATTCCTC
TTATTATCAAAAGCTGTCCCACACCCATAAACAGCCGCCAACACCATAGT
ACCCTTCTGGAAACACTACGGCATGCTCACCCAGCTTATTAACGAGTAGC
AGCGGCAGAGGAAATATACAGGGGGAAATCATCTCAAGAGAAAGAACCAA
AGCACACAGATAGAC
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Coding sequence (CDS) from alignment at chr2:664812..667576+

>NO02G02400.3 ID=NO02G02400.3|Name=NO02G02400.3|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr2:664812..667576+ (Nannochloropsis oceanica)
ATGCCGCTGTCGATTCCCTTCCTGCTGCTGTTCTGTAGCCTTGCCGTCAG
CGGTACCTCCGCATTTCTAGTTTTGCCCCTCTCCTCACGGTTGCCATCCT
CTTCTGCTCGCCATGTCCGCCAAATTGTTACCTCCTCCCCCCCATGCACC
TCGGTCGCCGCGACCGTTGCAACCACTGACACCTCGGGAGAGTGGGATGT
GGAGACGGACGTGGTTGTAATTGGCAGCGGCATTGGTGGCTTGAGCTGTG
CGGCACTTTTGGCATACTACGGTGAAGATGTAAGAGTATACGAGTCACAT
TATCACGCGGGCGGCTGTGCCCACGGCTTCGAGATAGACGGCTTTCACTT
CGACTCCGGCCCAAGCTTGTGGAATGGGATGGGATGCAAAGAAAAAGGCA
AGCGCAACCCTTTGGGAGATATTTTGAGCGTAGTGGGCGAAGGCGACACG
GTTAAGTACGCTAAATACAAGGGCTGGGGAATGTATGTTCCGGAAGGCAA
CTTTGTTTTCGAGGTCGGCCCGACAGCTTTTGAGAAGGTTGTGCGAGAGT
TTGGGGGGGGCGAGGCAGCGGTGGAGGAATGGAGGGCATTCCTGACAAGC
TTGGGGACGCTTACGAAGATCTCGACAGCAATGACTCCCTTGGCCCTCCG
TGCAGACATTGGGGCAATTTTTACGGTGGGGCGTTTCTTGCCTTCACTGG
CCAGGGCTGGGTTCTCTCCGGCAGTCACTGGACCTATCTTGGATGTGGCC
AAAAAGACGTTGAAAAATCCGTTTTTGATCAATTGGATCGAGTTTTTGTC
GTTTGCGATTTCAGGCTTGCCTGCCGATTCAACTATTGCTGCGGCTATGG
CGTACACGTTGAGGGATTTGCACATGGAAGGCGCTGAGCTCGACTACCCC
GTAGGAGGCAGCGCCGCTGTTGTAGACGCCCTTATCCACGCCATCAACAA
GCATGCCCAAACCAAACACCCGCAACCCGCCGAAACCGCAGAACGAATCA
CACTCAGCGCCCACGTTGAAAAAATCATTCTTGAAAACGGTCGGGCGGTC
GGGATCCAACTACGCAAAGGTGGGAAACGCGTACGGGCCCGCAAAGCCGT
CGTTTCCAATGCCAGCATATGGGACACTCTGAAACTTCTTCCCCCCGAAA
GCCTCCCCGTCGAGGAAATATCCAGCTTGACAGACACTCCTATGACTGGT
TCCTTCATGCATCTCCATCTAGGCATCGATGCCACAGGTTTACCGGCCGA
CTTGGAATGCCACCACACCGTCATAAACACATGGGACAAAATCGATGCTC
CTCAAAATATGGCCATCATCTCAATCCCCACCACCCTCGATCCGGGCCTT
GCACCCCCCGGGCATCACGTCCTGCATTGCTATGCTGCCGCGAACGAACC
TTACGAGCCATGGGAGGGCCTGAAACCAAACAGTCCCGAATACCTTGCCT
TGAAGAAAGAACGGGCCGAGTGGTTGTGGAGGGCCGTGGAACGCGTTATT
CCTGATGTGAGGCAACGGGTGAAGGTAGAGATGGTTGCGAGCCCCTTGAC
GCATGAGCGGTTTTTGCGGCGTTCGAGAGGGACCTATGGCGCTGGGTGGC
GGGCGGGGAAGGAGTCATTTCCTGGGTAA
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Synonyms
Publications