NO02G02300.1, NO02G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02300.1
Unique NameNO02G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr2:646803..648557 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:646803..648557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02300.1 vs.
Match: EWM30424.1 (nadh dehydrogenase subunit 11 [Nannochloropsis gaditana])

HSP 1 Score: 533.9 bits (1374), Expect = 3.500e-148
Identity = 283/329 (86.02%), Postives = 297/329 (90.27%), Query Frame = 0 
Query:    1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVYTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFSSSSVPSSSSSSATASSTLAARAAARPL-----PELSTAAAAATAGTSAPSCTRGAAAMGVMSQRALSCSFTSVFHLQKAGMNPQDFQKVTTLFKRSVIFPMAALVTGATVATIGAAV 325
            MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKV+TNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF     P S+SS+  AS+ LAARA ARPL     P L+     A    S P  ++G AAMGVMS+RALSCSFTSVFHLQKAGM PQDFQKVT+LFKRSVI PMAAL++GA VA++GA+V
Sbjct:    1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF-----PLSTSSA--ASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQG-AAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISGAAVASVGASV 321
The following BLAST results are available for this feature:
BLAST of NO02G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30424.13.500e-14886.02nadh dehydrogenase subunit 11 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02300NO02G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02300.1NO02G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02300.1.cds1NO02G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02300.1.cds2NO02G02300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02300.1 ID=NO02G02300.1|Name=NO02G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
AACTATAGGGCAAAGAATCAGCCAGCGGTTCCGCCCGCGGTCTGTAGTTA
AGCGCACTTTCGAGGGAGGCAATAACACAATCTGCTCTCGCCCAACGCCG
TCATCATCAGTCCTTGGTTATTCATAGCTAGCCTTTGCAGCAGCCGTAAA
CATGAGCAACCTTACACGGCTCTTTGTCAATGACATCGAGGTCTTTGTCC
CCCCAAACACGACGGTCTTGGAGGCGGCCGAGAAAGTGGGCGTCCAGGTA
CCGCGCTTCTGCTACCACCCCGCCCTCTCCATTGCCGGCAACTGCCGCAT
GTGCCTGGTCGAAATTGAGCGCACCCCCAAGCCAGTTGCATCTTGCGCGA
TGCCCGTGATGAAGGACATGAAGGTCTATACCAACAGCCCATTGGTCAAG
AAGGCTCGGGAGGCCGTGCTGGAGTTCTTGTTGCTGAACCATCCTTTGGA
CTGCCCCATTTGTGACCAGGGTGGGGAGTGCGACTTGCAGGACCAGACCA
TGTTGTACGCGTCTGACAGGTCCAGATTCTACGAGTTCAAGCGTGGGGTG
GAGGACAAGAATTTGGGGCCTTTTATCAAGACGATTATGACGCGCTGCAT
TCACTGCACACGCTGTGTGCGCTTCGCGGATGAGATTGCCGGAGTCGGGG
ACATGGGCACGACCAACCGGGGAAGGGACACAGAGATCGGCACTTACATT
GGGAAAGCGTTTGAATCCGAGGTCTCGGGCAACGTTATTGATCTCTGCCC
CGTCGGGGCTCTGACGGGCAAGACCTACTCCTTCTCCTCTTCCTCCGTCC
CTTCATCCTCCTCCTCCTCCGCCACGGCCTCCTCCACCCTGGCCGCCCGT
GCTGCCGCGCGTCCCTTACCAGAACTTTCCACTGCTGCTGCTGCTGCTAC
TGCTGGCACGTCTGCTCCCTCTTGCACGCGAGGGGCTGCTGCCATGGGGG
TTATGTCTCAACGGGCGCTTTCATGCTCGTTTACTTCCGTCTTCCACTTG
CAGAAGGCCGGCATGAACCCTCAGGATTTCCAGAAGGTGACCACGTTGTT
CAAGCGCTCGGTGATTTTCCCAATGGCAGCCCTGGTAACGGGCGCAACGG
TTGCCACGATTGGTGCGGCCGTTTAGGGAGGAAGGGAGAGAAGGGTGGGC
TTTGTGTGATATCAATGTGCGTGTGGGGGGGAAGTATTACGATGGTGACG
GAAAATATGTTTGCTCATGTTTTTGACCCGCCCTTTCAAAGTGGTAACAG
ACATTTAAGTGGTGATGGTGGGCGTGGGGGTGGCGGAGGAATGGAAGTGA
AGGAGAAGAAGGATGAGAGGTAATGGTAGGATGATAGGGAAAGGTATCTA
CGAAGAATGAGCTGATAGCTTGAAAGGAGATTAAGAGGAAGAAGAAGAAG
AAGGAGACAGACGACAACTTGAAGA
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protein sequence of NO02G02300.1

>NO02G02300.1-protein ID=NO02G02300.1-protein|Name=NO02G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRM
CLVEIERTPKPVASCAMPVMKDMKVYTNSPLVKKAREAVLEFLLLNHPLD
CPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCI
HCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCP
VGALTGKTYSFSSSSVPSSSSSSATASSTLAARAAARPLPELSTAAAAAT
AGTSAPSCTRGAAAMGVMSQRALSCSFTSVFHLQKAGMNPQDFQKVTTLF
KRSVIFPMAALVTGATVATIGAAV*
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mRNA from alignment at chr2:646803..648557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02300.1 ID=NO02G02300.1|Name=NO02G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp|location=Sequence derived from alignment at chr2:646803..648557+ (Nannochloropsis oceanica)
AACTATAGGGCAAAGAATCAGCCAGCGGTTCCGCCCGCGGTCTGTAGTTA
AGCGCACTTTCGAGGGAGGCAATAACACAATCTGCTCTCGCCCAACGCCG
TCATCATCAGTCCTTGGTTATTCATAGCTAGCCTTTGCAGCAGCCGTAAA
CATGAGCAACCTTACACGGCTCTTTGTCAATGACATCGAGGTCTTTGTCC
CCCCAAACACGACGGTCTTGGAGGCGGCCGAGAAAGTGGGCGTCCAGGTA
AGTTTGGCTCTTTGTAAGAGGGAGGGGTAGGGAGGAGAGGTTTCGTTGCT
TGCTGTGTCAGGCTCAGAAAGCATGTGGATCGCGCATGACAGCTTATGAC
AAACATTCTGTCAGTGGCATGGTCTTGATTGTCTTGGAAGGCGAGGCGAG
GTGCTAGATGGGCGAAACGAAAAGGGGACCAGCCGAGAGGAGCAACCACA
GCTTTTCACTCTGACAACAAAAAACACTGGAAGCACCGGGTGGAGCTTTT
AAAAACCCCAAACCCTCCATCTCATCACATTCTTGATTTCCCCTCTCCCA
CTTTTTCTTTCCTCCGGGATGGCTCAGGTACCGCGCTTCTGCTACCACCC
CGCCCTCTCCATTGCCGGCAACTGCCGCATGTGCCTGGTCGAAATTGAGC
GCACCCCCAAGCCAGTTGCATCTTGCGCGATGCCCGTGATGAAGGACATG
AAGGTCTATACCAACAGCCCATTGGTCAAGAAGGCTCGGGAGGCCGTGCT
GGAGTTCTTGTTGCTGAACCATCCTTTGGACTGCCCCATTTGTGACCAGG
GTGGGGAGTGCGACTTGCAGGACCAGACCATGTTGTACGCGTCTGACAGG
TCCAGATTCTACGAGTTCAAGCGTGGGGTGGAGGACAAGAATTTGGGGCC
TTTTATCAAGACGATTATGACGCGCTGCATTCACTGCACACGCTGTGTGC
GCTTCGCGGATGAGATTGCCGGAGTCGGGGACATGGGCACGACCAACCGG
GGAAGGGACACAGAGATCGGCACTTACATTGGGAAAGCGTTTGAATCCGA
GGTCTCGGGCAACGTTATTGATCTCTGCCCCGTCGGGGCTCTGACGGGCA
AGACCTACTCCTTCTCCTCTTCCTCCGTCCCTTCATCCTCCTCCTCCTCC
GCCACGGCCTCCTCCACCCTGGCCGCCCGTGCTGCCGCGCGTCCCTTACC
AGAACTTTCCACTGCTGCTGCTGCTGCTACTGCTGGCACGTCTGCTCCCT
CTTGCACGCGAGGGGCTGCTGCCATGGGGGTTATGTCTCAACGGGCGCTT
TCATGCTCGTTTACTTCCGTCTTCCACTTGCAGAAGGCCGGCATGAACCC
TCAGGATTTCCAGAAGGTGACCACGTTGTTCAAGCGCTCGGTGATTTTCC
CAATGGCAGCCCTGGTAACGGGCGCAACGGTTGCCACGATTGGTGCGGCC
GTTTAGGGAGGAAGGGAGAGAAGGGTGGGCTTTGTGTGATATCAATGTGC
GTGTGGGGGGGAAGTATTACGATGGTGACGGAAAATATGTTTGCTCATGT
TTTTGACCCGCCCTTTCAAAGTGGTAACAGACATTTAAGTGGTGATGGTG
GGCGTGGGGGTGGCGGAGGAATGGAAGTGAAGGAGAAGAAGGATGAGAGG
TAATGGTAGGATGATAGGGAAAGGTATCTACGAAGAATGAGCTGATAGCT
TGAAAGGAGATTAAGAGGAAGAAGAAGAAGAAGGAGACAGACGACAACTT
GAAGA
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Coding sequence (CDS) from alignment at chr2:646803..648557+

>NO02G02300.1 ID=NO02G02300.1|Name=NO02G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr2:646803..648557+ (Nannochloropsis oceanica)
ATGAGCAACCTTACACGGCTCTTTGTCAATGACATCGAGGTCTTTGTCCC
CCCAAACACGACGGTCTTGGAGGCGGCCGAGAAAGTGGGCGTCCAGGTAC
CGCGCTTCTGCTACCACCCCGCCCTCTCCATTGCCGGCAACTGCCGCATG
TGCCTGGTCGAAATTGAGCGCACCCCCAAGCCAGTTGCATCTTGCGCGAT
GCCCGTGATGAAGGACATGAAGGTCTATACCAACAGCCCATTGGTCAAGA
AGGCTCGGGAGGCCGTGCTGGAGTTCTTGTTGCTGAACCATCCTTTGGAC
TGCCCCATTTGTGACCAGGGTGGGGAGTGCGACTTGCAGGACCAGACCAT
GTTGTACGCGTCTGACAGGTCCAGATTCTACGAGTTCAAGCGTGGGGTGG
AGGACAAGAATTTGGGGCCTTTTATCAAGACGATTATGACGCGCTGCATT
CACTGCACACGCTGTGTGCGCTTCGCGGATGAGATTGCCGGAGTCGGGGA
CATGGGCACGACCAACCGGGGAAGGGACACAGAGATCGGCACTTACATTG
GGAAAGCGTTTGAATCCGAGGTCTCGGGCAACGTTATTGATCTCTGCCCC
GTCGGGGCTCTGACGGGCAAGACCTACTCCTTCTCCTCTTCCTCCGTCCC
TTCATCCTCCTCCTCCTCCGCCACGGCCTCCTCCACCCTGGCCGCCCGTG
CTGCCGCGCGTCCCTTACCAGAACTTTCCACTGCTGCTGCTGCTGCTACT
GCTGGCACGTCTGCTCCCTCTTGCACGCGAGGGGCTGCTGCCATGGGGGT
TATGTCTCAACGGGCGCTTTCATGCTCGTTTACTTCCGTCTTCCACTTGC
AGAAGGCCGGCATGAACCCTCAGGATTTCCAGAAGGTGACCACGTTGTTC
AAGCGCTCGGTGATTTTCCCAATGGCAGCCCTGGTAACGGGCGCAACGGT
TGCCACGATTGGTGCGGCCGTTTAG
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Synonyms
Publications