NO02G02090.1, NO02G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02090.1
Unique NameNO02G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2846
Alignment locationchr2:596296..599503 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:596296..599503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02090.1 vs.
Match: EWM30466.1 (hypothetical protein Naga_100013g5 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 5.900e-38
Identity = 134/279 (48.03%), Postives = 172/279 (61.65%), Query Frame = 0 
Query:   99 MSPYLLYRTKGLSIKGNTETLAIWFHNEKDRGHIAGCLRKVLRLESAANQPQGEQQPAQQRELLLKSAALPPAPTVEEQDRMDDSVVRNTSTSTSMSTSTSISVGGRTATTMKKPISIEEMLVKAANIGGDASSSSKSNSSSSSSSNSSGAGDVSTTAGAAKRPAATSPPTVMDMLLRSRAGTGVTKTTTAATMDGGRSMRSGSMSTSASGS--SALLNPLEMVRPSSSSSTS-NGRGAT-AAAGALNKQQLKEALLALIEDDAFLETLHHAYQKQRSK 374
            MSPYLLYR    S K + ETLAIWFH+EKDR HIAGCL+KVLRL S+ +  Q +Q  AQ+RE LL S ALPPAPT+ +  R+D     NT    S +TSTS        T  KKP +IE++L+KAA++GG          S+ +        D  TT+  A+R AA SPP + +MLLR +  T        A   G  +  +GS      GS  S LLNPL MVRP S+S+ S +G G T + A +L+KQQLKEALLAL+E+DAFLETLH AY ++R++
Sbjct:    1 MSPYLLYRRHTDSDK-DAETLAIWFHSEKDRVHIAGCLQKVLRLHSSVDPKQQDQWQAQERESLLGS-ALPPAPTLTDLSRVD-----NTEAMKSRTTSTSAE-----TTKEKKPTAIEDLLLKAASLGG---------GSAITRPELDRKADTLTTS-PARRAAAASPPAITNMLLRPKVATA---HAAPAAETGRPTCTNGSGRGPGQGSIVSTLLNPLGMVRPISNSTCSDSGNGGTISPARSLDKQQLKEALLALLEEDAFLETLHRAYLRRRTE 254
The following BLAST results are available for this feature:
BLAST of NO02G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30466.15.900e-3848.03hypothetical protein Naga_100013g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02090NO02G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02090.1NO02G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02090.1.cds1NO02G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02090.1.cds2NO02G02090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02090.1 ID=NO02G02090.1|Name=NO02G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2846bp
TCCCTCCCTCCCTTTTCCCCTCCTTCCCTCCCGCCACCCTCACTTTATCG
ACGCCCCACTAAAATCCATCTCCGGGTGTTGTTTCATAAATTTTTCCAGC
ATCTCCCTCTTCTTCAACTCTTCCGACGTGGGGAGCCCCATCTGCTTCTG
CCGCTGATCAAACATCATCTTCTCCACCGTCTGTCTCGTCTCGGCGTCCA
GGTCACTCAACTTGGAGTTCTCAGGATTCACTTTACTGGTATCGATTTCA
GGATCACCCACCACTACGCACTTCCACCACTCCATCCCGTTCTCCTTCTG
CAGATTCACCACCACCTCCCGGCCATCCTCAACGGTCCAAAACGAATCAT
CCACCTTCACAGGCTTGTGCAACTCCCCATCCACCATCGGAGGCTGTCCT
TTCAACCCAACCCGCAAACGTTTCTTCCCGATGTCCACCACCAAATCACG
AGAGCGCGTTCCGACTGGCACGGGCACATTTACCGTCACCTCTGCCAGCT
GCTGCGTCCAGACGTAGTGCTCCGTGGTCCCGCCGTTCCCCGGAGGAGCT
TCCTTGACTTCTGCCTCCTCTCCCTCCTTCACATTATCAGGGTTGTCCTC
AGCCTTCTTGGAGTTTGCCTTCTTCTCGATAGGCGCTGCTGCTGCAGAAG
AAGAAACATCAAACGTTCCGTCCGATCCCACCTCCACCAAAGACGAGGAG
GAAGAGGTCGTTGCTGCCGCATTCTTCATAGCCTTCTGCTCCTCCGCTTC
CTTCAGCTTGGTAGCACGCAAGCGATCCTGGCGCCGCTTCTCCTCAGCCT
CGCGGGCTTGGCGTTGCTCCTGCATGGTGCGTTCCACCAGGGCCATTTGC
TTTCGTACGGCGTACCGCACTGTTTCCTCCACCTTGTCGGCCGTGGCGCC
TGTATAAAAATCAGTCTTGCGCCGCAAAAACGACAAGAAGACCTCCAGCA
GTTCGTCGATACCTTGACATTGCTGAGCAATGTTGAGGAGAAGCGGATCA
AACCGGCCTTCCTCCATTATTTTGGAGAGAGTTTGCTATATTATTTGTGA
GGAAGCTGTGGGGAAGGAGTGTGGGATGCGGGTGTGGCTGAAGAGACTGA
AAATAGAAGAACAAAGATTCTTTATAACAATCGCGTGTCACGTGCACCAG
TCAAATACGTCCAAATCCTCGTGCAACGACTCGTCAAGCTATGGCATGAC
GATATGTGGGGGGAAAATGCAAGTTCTGAACGCGCCGGATGCAGGATAGG
GGCGTGGAAGAAAAAGAGCTTGGATTGATGATGCGAGCGCTTCGTTTGAC
CTCGGGATGCAAGCCACACACGCGATTATATCTACGTGCACACGCACAGG
AGCATCTCACGTAGAAAGTGGACGGGGAGTTAGCTGCTGCAAACCCGGCG
CTGCTTTTTGTCTCTTCCACCTAGCGTCTACACCCCAGTCACCACAAGGA
GGACTCTGTACCCCACGCTCCATTTAGCTAAGCACCGTCAACACCTGCAC
GCGACCGAAATCGAGCAACCGTACGAGCGTGTTTAAGGTGACGGCATGCG
CAAGACGTCCAGTCATGGCGACCGAAGGCGGAGGTCTGGTCAAGCGGACG
CCACAGCAAGTTCAGGCAGCAAATCTCATGATCTTACAGAGGCGGGACGA
TGCCGTCTCCGAGATTCTAGCCACGGCGACCTATGTGGTGATTTACGTAT
TTGAGCCCGTCACCAAGCAATGGGAGCGCAAGGAGATTGAAGGTTCTCTC
TTTGTCGTCAAACGCAGCTACGGCGTGCGTTTCCGCCTTGTTGTTCTAAA
CCGGATCAACCCTAAAGACCTCGAAGAAGACCTCACTGGCAGCTTCACCT
TCGAAGATATGTCCCCATACCTGCTATATCGCACGAAGGGCCTTTCTATC
AAAGGTAACACCGAGACGCTGGCCATATGGTTTCACAACGAGAAGGATAG
AGGGCACATTGCCGGATGCTTGCGGAAAGTCCTCCGACTCGAGTCCGCGG
CTAACCAGCCTCAGGGGGAGCAGCAGCCAGCACAACAGCGAGAGCTTTTG
CTCAAGTCCGCGGCGTTGCCTCCGGCACCGACAGTGGAGGAGCAGGATCG
AATGGATGACAGTGTGGTGAGAAATACCAGCACCAGTACAAGCATGAGCA
CCAGCACCAGCATCAGCGTTGGAGGGAGGACGGCGACGACGATGAAGAAG
CCTATTAGTATCGAGGAGATGCTCGTGAAAGCAGCCAACATCGGTGGCGA
CGCTAGCAGCAGCAGTAAAAGTAACAGCAGTAGCAGCAGTAGCAGCAACA
GCAGCGGAGCGGGAGATGTCTCTACGACTGCAGGTGCCGCGAAACGACCG
GCGGCTACCTCCCCTCCTACAGTGATGGACATGCTCCTCAGATCAAGAGC
AGGCACAGGGGTTACCAAAACTACAACAGCAGCGACGATGGATGGGGGAC
GATCGATGCGTAGTGGGAGCATGAGTACCAGCGCGAGTGGAAGTTCTGCA
TTGCTGAACCCGTTGGAAATGGTAAGACCGAGCAGTAGCAGTAGCACCAG
CAATGGAAGGGGAGCGACGGCGGCTGCCGGAGCTTTGAACAAGCAACAGC
TTAAGGAGGCTTTGTTGGCGTTAATTGAAGACGATGCATTCCTTGAGACG
TTGCATCATGCGTATCAGAAGCAAAGGTCCAAGTAGAGCATGTGGGGAGA
CCGAAGGGTATTTGCTTGTTTGGATGAGGGTACGGAAGATATCACACCCA
CCAATCAAATAAAAGAAATCAACGGACACATAAACATAGTCATTGTTTTA
AACTTACCTTTCCTACTGGCGATTAGCTGCTTTCCCTCTATGCGCT
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protein sequence of NO02G02090.1

>NO02G02090.1-protein ID=NO02G02090.1-protein|Name=NO02G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MATEGGGLVKRTPQQVQAANLMILQRRDDAVSEILATATYVVIYVFEPVT
KQWERKEIEGSLFVVKRSYGVRFRLVVLNRINPKDLEEDLTGSFTFEDMS
PYLLYRTKGLSIKGNTETLAIWFHNEKDRGHIAGCLRKVLRLESAANQPQ
GEQQPAQQRELLLKSAALPPAPTVEEQDRMDDSVVRNTSTSTSMSTSTSI
SVGGRTATTMKKPISIEEMLVKAANIGGDASSSSKSNSSSSSSSNSSGAG
DVSTTAGAAKRPAATSPPTVMDMLLRSRAGTGVTKTTTAATMDGGRSMRS
GSMSTSASGSSALLNPLEMVRPSSSSSTSNGRGATAAAGALNKQQLKEAL
LALIEDDAFLETLHHAYQKQRSK*
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mRNA from alignment at chr2:596296..599503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02090.1 ID=NO02G02090.1|Name=NO02G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=3208bp|location=Sequence derived from alignment at chr2:596296..599503+ (Nannochloropsis oceanica)
TCCCTCCCTCCCTTTTCCCCTCCTTCCCTCCCGCCACCCTCACTTTATCG
ACGCCCCACTAAAATCCATCTCCGGGTGTTGTTTCATAAATTTTTCCAGC
ATCTCCCTCTTCTTCAACTCTTCCGACGTGGGGAGCCCCATCTGCTTCTG
CCGCTGATCAAACATCATCTTCTCCACCGTCTGTCTCGTCTCGGCGTCCA
GGTCACTCAACTTGGAGTTCTCAGGATTCACTTTACTGGTATCGATTTCA
GGATCACCCACCACTACGCACTTCCACCACTCCATCCCGTTCTCCTTCTG
CAGATTCACCACCACCTCCCGGCCATCCTCAACGGTCCAAAACGAATCAT
CCACCTTCACAGGCTTGTGCAACTCCCCATCCACCATCGGAGGCTGTCCT
TTCAACCCAACCCGCAAACGTTTCTTCCCGATGTCCACCACCAAATCACG
AGAGCGCGTTCCGACTGGCACGGGCACATTTACCGTCACCTCTGCCAGCT
GCTGCGTCCAGACGTAGTGCTCCGTGGTCCCGCCGTTCCCCGGAGGAGCT
TCCTTGACTTCTGCCTCCTCTCCCTCCTTCACATTATCAGGGTTGTCCTC
AGCCTTCTTGGAGTTTGCCTTCTTCTCGATAGGCGCTGCTGCTGCAGAAG
AAGAAACATCAAACGTTCCGTCCGATCCCACCTCCACCAAAGACGAGGAG
GAAGAGGTCGTTGCTGCCGCATTCTTCATAGCCTTCTGCTCCTCCGCTTC
CTTCAGCTTGGTAGCACGCAAGCGATCCTGGCGCCGCTTCTCCTCAGCCT
CGCGGGCTTGGCGTTGCTCCTGCATGGTGCGTTCCACCAGGGCCATTTGC
TTTCGTACGGCGTACCGCACTGTTTCCTCCACCTTGTCGGCCGTGGCGCC
TGTATAAAAATCAGTCTTGCGCCGCAAAAACGACAAGAAGACCTCCAGCA
GTTCGTCGATACCTTGACATTGCTGAGCAATGTTGAGGAGAAGCGGATCA
AACCGGCCTTCCTCCATTATTTTGGAGAGAGTTTGCTATATTATTTGTGA
GGAAGCTGTGGGGAAGGAGTGTGGGATGCGGGTGTGGCTGAAGAGACTGA
AAATAGAAGAACAAAGATTCTTTATAACAATCGCGTGTCACGTGCACCAG
TCAAATACGTCCAAATCCTCGTGCAACGACTCGTCAAGCTATGGCATGAC
GATATGTGGGGGGAAAATGCAAGTTCTGAACGCGCCGGATGCAGGATAGG
GGCGTGGAAGAAAAAGAGCTTGGATTGATGATGCGAGCGCTTCGTTTGAC
CTCGGGATGCAAGCCACACACGCGATTATATCTACGTGCACACGCACAGG
AGCATCTCACGTAGAAAGTGGACGGGGAGTTAGCTGCTGCAAACCCGGCG
CTGCTTTTTGTCTCTTCCACCTAGCGTCTACACCCCAGTCACCACAAGGA
GGACTCTGTACCCCACGCTCCATTTAGCTAAGCACCGTCAACACCTGCAC
GCGACCGAAATCGAGCAACCGTACGAGCGTGTTTAAGGTGACGGCATGCG
CAAGGCAAGCGGCATTATTCCGTTTATCGCATCAGTCATCTCTGTCACAC
CAATCCCACACATCCCTTCACCCCACCCCCTCCCCACACAGACGTCCAGT
CATGGCGACCGAAGGCGGAGGTCTGGTCAAGCGGACGCCACAGCAAGTTC
AGGCAGCAAATCTCATGATCTTACAGAGGCGGGACGATGCCGTCTCCGAG
ATTCTAGCCACGGCGACCTATGTGGTGATTTACGTATTTGAGCCCGTCAC
CAAGCAATGGGAGCGCAAGGAGGTAAGCTGTTTGCTTTTGGCAAGGCAGG
AAATTCAAGTGGGGAGAACAACATAGGGGAGAACAACATAATGTCACACT
TGAAATATACTGCTGATGGTTTGGTATGTCGTGGGCCAGTTTTAACGTTG
CGTGTGAGGCTTGTGTGCGTGTACTCATTTATCCGCTTGTGTGTACCTCA
TCGATCCGCCATCCGCCACATGTCCTCGGACTCTTCTGTCTTATCACCCC
TCTCACGCATTTTTTCCCTACGTTACTCCCTCCCATAAATTTTACAGATT
GAAGGTTCTCTCTTTGTCGTCAAACGCAGCTACGGCGTGCGTTTCCGCCT
TGTTGTTCTAAACCGGATCAACCCTAAAGACCTCGAAGAAGACCTCACTG
GCAGCTTCACCTTCGAAGATATGTCCCCATACCTGCTATATCGCACGAAG
GGCCTTTCTATCAAAGGTAACACCGAGACGCTGGCCATATGGTTTCACAA
CGAGAAGGATAGAGGGCACATTGCCGGATGCTTGCGGAAAGTCCTCCGAC
TCGAGTCCGCGGCTAACCAGCCTCAGGGGGAGCAGCAGCCAGCACAACAG
CGAGAGCTTTTGCTCAAGTCCGCGGCGTTGCCTCCGGCACCGACAGTGGA
GGAGCAGGATCGAATGGATGACAGTGTGGTGAGAAATACCAGCACCAGTA
CAAGCATGAGCACCAGCACCAGCATCAGCGTTGGAGGGAGGACGGCGACG
ACGATGAAGAAGCCTATTAGTATCGAGGAGATGCTCGTGAAAGCAGCCAA
CATCGGTGGCGACGCTAGCAGCAGCAGTAAAAGTAACAGCAGTAGCAGCA
GTAGCAGCAACAGCAGCGGAGCGGGAGATGTCTCTACGACTGCAGGTGCC
GCGAAACGACCGGCGGCTACCTCCCCTCCTACAGTGATGGACATGCTCCT
CAGATCAAGAGCAGGCACAGGGGTTACCAAAACTACAACAGCAGCGACGA
TGGATGGGGGACGATCGATGCGTAGTGGGAGCATGAGTACCAGCGCGAGT
GGAAGTTCTGCATTGCTGAACCCGTTGGAAATGGTAAGACCGAGCAGTAG
CAGTAGCACCAGCAATGGAAGGGGAGCGACGGCGGCTGCCGGAGCTTTGA
ACAAGCAACAGCTTAAGGAGGCTTTGTTGGCGTTAATTGAAGACGATGCA
TTCCTTGAGACGTTGCATCATGCGTATCAGAAGCAAAGGTCCAAGTAGAG
CATGTGGGGAGACCGAAGGGTATTTGCTTGTTTGGATGAGGGTACGGAAG
ATATCACACCCACCAATCAAATAAAAGAAATCAACGGACACATAAACATA
GTCATTGTTTTAAACTTACCTTTCCTACTGGCGATTAGCTGCTTTCCCTC
TATGCGCT
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Coding sequence (CDS) from alignment at chr2:596296..599503+

>NO02G02090.1 ID=NO02G02090.1|Name=NO02G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr2:596296..599503+ (Nannochloropsis oceanica)
ATGGCGACCGAAGGCGGAGGTCTGGTCAAGCGGACGCCACAGCAAGTTCA
GGCAGCAAATCTCATGATCTTACAGAGGCGGGACGATGCCGTCTCCGAGA
TTCTAGCCACGGCGACCTATGTGGTGATTTACGTATTTGAGCCCGTCACC
AAGCAATGGGAGCGCAAGGAGATTGAAGGTTCTCTCTTTGTCGTCAAACG
CAGCTACGGCGTGCGTTTCCGCCTTGTTGTTCTAAACCGGATCAACCCTA
AAGACCTCGAAGAAGACCTCACTGGCAGCTTCACCTTCGAAGATATGTCC
CCATACCTGCTATATCGCACGAAGGGCCTTTCTATCAAAGGTAACACCGA
GACGCTGGCCATATGGTTTCACAACGAGAAGGATAGAGGGCACATTGCCG
GATGCTTGCGGAAAGTCCTCCGACTCGAGTCCGCGGCTAACCAGCCTCAG
GGGGAGCAGCAGCCAGCACAACAGCGAGAGCTTTTGCTCAAGTCCGCGGC
GTTGCCTCCGGCACCGACAGTGGAGGAGCAGGATCGAATGGATGACAGTG
TGGTGAGAAATACCAGCACCAGTACAAGCATGAGCACCAGCACCAGCATC
AGCGTTGGAGGGAGGACGGCGACGACGATGAAGAAGCCTATTAGTATCGA
GGAGATGCTCGTGAAAGCAGCCAACATCGGTGGCGACGCTAGCAGCAGCA
GTAAAAGTAACAGCAGTAGCAGCAGTAGCAGCAACAGCAGCGGAGCGGGA
GATGTCTCTACGACTGCAGGTGCCGCGAAACGACCGGCGGCTACCTCCCC
TCCTACAGTGATGGACATGCTCCTCAGATCAAGAGCAGGCACAGGGGTTA
CCAAAACTACAACAGCAGCGACGATGGATGGGGGACGATCGATGCGTAGT
GGGAGCATGAGTACCAGCGCGAGTGGAAGTTCTGCATTGCTGAACCCGTT
GGAAATGGTAAGACCGAGCAGTAGCAGTAGCACCAGCAATGGAAGGGGAG
CGACGGCGGCTGCCGGAGCTTTGAACAAGCAACAGCTTAAGGAGGCTTTG
TTGGCGTTAATTGAAGACGATGCATTCCTTGAGACGTTGCATCATGCGTA
TCAGAAGCAAAGGTCCAAGTAG
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Synonyms
Publications