NO02G01610.1, NO02G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01610.1
Unique NameNO02G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1002
Alignment locationchr2:471321..472322 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:471321..472322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01610.1 vs.
Match: EWM30487.1 (short-chain dehydrogenase reductase family protein [Nannochloropsis gaditana]; EWM30488.1 short-chain dehydrogenase reductase family protein [Nannochloropsis gaditana])

HSP 1 Score: 419.1 bits (1076), Expect = 1.300e-113
Identity = 199/315 (63.17%), Postives = 252/315 (80.00%), Query Frame = 0 
Query:   20 LLFPLLLVLLLPHLTQAFTPRISAVVTGGNRGLGLATAELLAEMGYRVILTARNVEEGQAHVMDIQKRHGQDRCEFVPLDVSQPESIQTLMAHLKQDKELREGMPHLWINNAGICVRDEDEAAAVDGSGGREGVYQRTLDVNAWGPVALMDACLPGMQKRGFGCVINISSGDGELAYLHSLVAKRLREMKSKGTLRQYANRVASNQEQGLWPKGGGLAPVPWPAYCFSKSVLNTATRLMHAQTQETAAEAGRNRL-RLRVLALCPGDVATSMCDDDAVVDAVSPREAALDVVWAALHPDECPGGFFYRHRRMIPW 334
            + FP+LL +LL  L   FTPRI+AVVTGGNRGLGLA ++LLAE+GY VILTARN EEGQA V DIQ+RHGQ+RCEF+ LDVS+P+SI+  +  +K+++E+R G+PH+ INNAGICVRDED AAAV+GSGGREGVY+   D+N W PVALM+ACLPGM K GFGC++NISSGDGELAYLHS VAKRL+ ++S   L+Q+++ VA  Q++G WP+G GLAPV WPAY FSK+VLN ATRL+ ++     ++  + R  + R++A+CPGDV T+MCD+ A  DA+SP +AALDVVWA LH  EC GG+FYR RR IPW
Sbjct:    1 MAFPVLLFVLLFPLVHGFTPRITAVVTGGNRGLGLAISDLLAEVGYHVILTARNAEEGQARVADIQRRHGQNRCEFMALDVSEPKSIKAFVDQMKRNEEMRGGVPHVLINNAGICVRDEDAAAAVEGSGGREGVYRSVFDINTWAPVALMEACLPGMCKHGFGCIVNISSGDGELAYLHSEVAKRLKRVRSLAELKQFSDWVAQMQQEGPWPRGEGLAPVSWPAYSFSKAVLNAATRLLQSRVDALVSKDMKVRAHQPRIVAICPGDVNTAMCDEHAAHDALSPEQAALDVVWAVLHSKECHGGYFYRARRAIPW 315
The following BLAST results are available for this feature:
BLAST of NO02G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30487.11.300e-11363.17short-chain dehydrogenase reductase family protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01610NO02G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01610.1NO02G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01610.1.cds1NO02G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01610.1 ID=NO02G01610.1|Name=NO02G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp
ATGCATCTGCAGCGGCGCCGGAGGAACTGTCTCGCCCCGCCCACACCGTT
TCCTCTCCTCCTCTTCCCCCTCCTCCTCGTCCTCCTCCTCCCCCACTTGA
CCCAGGCCTTTACGCCCCGCATCAGCGCCGTGGTCACGGGCGGCAATCGA
GGACTGGGCCTGGCCACGGCCGAATTATTGGCTGAAATGGGCTACCGTGT
CATTCTAACGGCGCGCAACGTGGAGGAAGGCCAGGCGCACGTCATGGACA
TTCAGAAGCGGCATGGGCAAGATCGATGTGAATTTGTGCCTTTGGACGTG
AGCCAGCCAGAAAGCATCCAGACTTTGATGGCACACTTGAAGCAGGACAA
GGAGCTGCGGGAAGGCATGCCGCATTTATGGATCAATAACGCAGGGATCT
GCGTGCGTGACGAAGACGAAGCAGCGGCAGTAGATGGGAGCGGAGGGAGG
GAAGGCGTGTATCAGCGCACGCTGGACGTTAATGCGTGGGGACCCGTAGC
ACTGATGGACGCATGTTTGCCAGGCATGCAAAAACGTGGGTTTGGATGTG
TCATTAACATCTCGAGCGGGGATGGTGAGTTGGCATATTTGCACAGTCTG
GTGGCCAAGCGCCTAAGGGAGATGAAAAGCAAGGGAACGCTACGTCAGTA
CGCCAACCGAGTGGCAAGCAATCAGGAGCAAGGCCTCTGGCCAAAAGGGG
GAGGCCTGGCGCCTGTGCCATGGCCGGCGTATTGCTTTTCGAAATCGGTA
CTAAATACAGCGACACGCTTGATGCACGCCCAGACACAGGAGACTGCGGC
AGAGGCTGGCAGGAATAGACTTCGGCTGCGGGTGTTGGCGTTGTGCCCGG
GGGATGTTGCGACGAGTATGTGCGATGATGATGCTGTGGTTGATGCTGTG
TCACCGAGGGAAGCGGCCTTGGACGTGGTGTGGGCGGCGCTGCACCCGGA
CGAATGTCCAGGAGGATTTTTTTATCGGCATCGACGAATGATACCCTGGT
GA
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protein sequence of NO02G01610.1

>NO02G01610.1-protein ID=NO02G01610.1-protein|Name=NO02G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MHLQRRRRNCLAPPTPFPLLLFPLLLVLLLPHLTQAFTPRISAVVTGGNR
GLGLATAELLAEMGYRVILTARNVEEGQAHVMDIQKRHGQDRCEFVPLDV
SQPESIQTLMAHLKQDKELREGMPHLWINNAGICVRDEDEAAAVDGSGGR
EGVYQRTLDVNAWGPVALMDACLPGMQKRGFGCVINISSGDGELAYLHSL
VAKRLREMKSKGTLRQYANRVASNQEQGLWPKGGGLAPVPWPAYCFSKSV
LNTATRLMHAQTQETAAEAGRNRLRLRVLALCPGDVATSMCDDDAVVDAV
SPREAALDVVWAALHPDECPGGFFYRHRRMIPW*
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mRNA from alignment at chr2:471321..472322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01610.1 ID=NO02G01610.1|Name=NO02G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp|location=Sequence derived from alignment at chr2:471321..472322- (Nannochloropsis oceanica)
ATGCATCTGCAGCGGCGCCGGAGGAACTGTCTCGCCCCGCCCACACCGTT
TCCTCTCCTCCTCTTCCCCCTCCTCCTCGTCCTCCTCCTCCCCCACTTGA
CCCAGGCCTTTACGCCCCGCATCAGCGCCGTGGTCACGGGCGGCAATCGA
GGACTGGGCCTGGCCACGGCCGAATTATTGGCTGAAATGGGCTACCGTGT
CATTCTAACGGCGCGCAACGTGGAGGAAGGCCAGGCGCACGTCATGGACA
TTCAGAAGCGGCATGGGCAAGATCGATGTGAATTTGTGCCTTTGGACGTG
AGCCAGCCAGAAAGCATCCAGACTTTGATGGCACACTTGAAGCAGGACAA
GGAGCTGCGGGAAGGCATGCCGCATTTATGGATCAATAACGCAGGGATCT
GCGTGCGTGACGAAGACGAAGCAGCGGCAGTAGATGGGAGCGGAGGGAGG
GAAGGCGTGTATCAGCGCACGCTGGACGTTAATGCGTGGGGACCCGTAGC
ACTGATGGACGCATGTTTGCCAGGCATGCAAAAACGTGGGTTTGGATGTG
TCATTAACATCTCGAGCGGGGATGGTGAGTTGGCATATTTGCACAGTCTG
GTGGCCAAGCGCCTAAGGGAGATGAAAAGCAAGGGAACGCTACGTCAGTA
CGCCAACCGAGTGGCAAGCAATCAGGAGCAAGGCCTCTGGCCAAAAGGGG
GAGGCCTGGCGCCTGTGCCATGGCCGGCGTATTGCTTTTCGAAATCGGTA
CTAAATACAGCGACACGCTTGATGCACGCCCAGACACAGGAGACTGCGGC
AGAGGCTGGCAGGAATAGACTTCGGCTGCGGGTGTTGGCGTTGTGCCCGG
GGGATGTTGCGACGAGTATGTGCGATGATGATGCTGTGGTTGATGCTGTG
TCACCGAGGGAAGCGGCCTTGGACGTGGTGTGGGCGGCGCTGCACCCGGA
CGAATGTCCAGGAGGATTTTTTTATCGGCATCGACGAATGATACCCTGGT
GA
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Coding sequence (CDS) from alignment at chr2:471321..472322-

>NO02G01610.1 ID=NO02G01610.1|Name=NO02G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at chr2:471321..472322- (Nannochloropsis oceanica)
ATGCATCTGCAGCGGCGCCGGAGGAACTGTCTCGCCCCGCCCACACCGTT
TCCTCTCCTCCTCTTCCCCCTCCTCCTCGTCCTCCTCCTCCCCCACTTGA
CCCAGGCCTTTACGCCCCGCATCAGCGCCGTGGTCACGGGCGGCAATCGA
GGACTGGGCCTGGCCACGGCCGAATTATTGGCTGAAATGGGCTACCGTGT
CATTCTAACGGCGCGCAACGTGGAGGAAGGCCAGGCGCACGTCATGGACA
TTCAGAAGCGGCATGGGCAAGATCGATGTGAATTTGTGCCTTTGGACGTG
AGCCAGCCAGAAAGCATCCAGACTTTGATGGCACACTTGAAGCAGGACAA
GGAGCTGCGGGAAGGCATGCCGCATTTATGGATCAATAACGCAGGGATCT
GCGTGCGTGACGAAGACGAAGCAGCGGCAGTAGATGGGAGCGGAGGGAGG
GAAGGCGTGTATCAGCGCACGCTGGACGTTAATGCGTGGGGACCCGTAGC
ACTGATGGACGCATGTTTGCCAGGCATGCAAAAACGTGGGTTTGGATGTG
TCATTAACATCTCGAGCGGGGATGGTGAGTTGGCATATTTGCACAGTCTG
GTGGCCAAGCGCCTAAGGGAGATGAAAAGCAAGGGAACGCTACGTCAGTA
CGCCAACCGAGTGGCAAGCAATCAGGAGCAAGGCCTCTGGCCAAAAGGGG
GAGGCCTGGCGCCTGTGCCATGGCCGGCGTATTGCTTTTCGAAATCGGTA
CTAAATACAGCGACACGCTTGATGCACGCCCAGACACAGGAGACTGCGGC
AGAGGCTGGCAGGAATAGACTTCGGCTGCGGGTGTTGGCGTTGTGCCCGG
GGGATGTTGCGACGAGTATGTGCGATGATGATGCTGTGGTTGATGCTGTG
TCACCGAGGGAAGCGGCCTTGGACGTGGTGTGGGCGGCGCTGCACCCGGA
CGAATGTCCAGGAGGATTTTTTTATCGGCATCGACGAATGATACCCTGGT
GA
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Synonyms
Publications