NO02G01390.1, NO02G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01390.1
Unique NameNO02G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr2:415897..417392 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:415897..417392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01390.1 vs.
Match: EWM30502.1 (hypothetical protein Naga_100013g63 [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 4.100e-33
Identity = 80/110 (72.73%), Postives = 92/110 (83.64%), Query Frame = 0 
Query:    1 MKLSLTCLLLVAL---LLVMGSDGFVPRVKAPARSSRTILREGGGFNFMEMGSRFLNELLPWGDSSKGLWAGKRDAMVVKYMEKTGINREQAEREVDEYLKDKDAYIAKA 108
            MK++ +C LLVAL   L +   + FV R +   RSSRT+LREG  F+FMEMGSRFLNELLPWGD+ KG+WAGKRDAMVVKYMEKTGI++EQAEREVDEYLKDKDAYIAKA
Sbjct:   46 MKVAASCQLLVALWVFLFMSSGNAFVFRPQPLTRSSRTVLREG--FDFMEMGSRFLNELLPWGDAKKGMWAGKRDAMVVKYMEKTGISKEQAEREVDEYLKDKDAYIAKA 153
The following BLAST results are available for this feature:
BLAST of NO02G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30502.14.100e-3372.73hypothetical protein Naga_100013g63 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01390NO02G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01390.1NO02G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01390.1.cds1NO02G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01390.1.cds2NO02G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01390.1.cds3NO02G01390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01390.1 ID=NO02G01390.1|Name=NO02G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
CAGGCGACATCAACAGCAGCAGGTCAACTGCTGGGCTTCTCCATCAGCCC
ACAGCTTCCCCACACACATAGACAAGCACCATGAAGCTTTCTTTGACGTG
CCTGCTCCTCGTCGCCCTTCTCCTTGTCATGGGTAGTGATGGCTTTGTCC
CGCGTGTCAAGGCCCCTGCCCGCAGCAGCCGCACCATCCTTCGGGAAGGT
GGAGGGTTTAACTTCATGGAGATGGGCTCTCGGTTCCTGAATGAGCTGTT
GCCATGGGGCGACTCGAGCAAGGGCTTGTGGGCTGGGAAGCGGGATGCGA
TGGTGGTCAAGTACATGGAGAAAACAGGCATCAATAGGGAGCAGGCCGAG
CGGGAGGTTGACGAATACCTGAAAGACAAAGACGCCTACATCGCGAAGGC
CCGCGCGGAGGAGGCGAAGCAAGCAAAAAATAAAAAATAATGTTTACGGA
GACCTCATTATTTCTTAAAAGCACTGAAAAAATCATCGCACAAGGACGGA
AAAATGCACTCGAGTGAGTGTGAGTAGTGGTGTGAAAACGCCTTTCTGAC
AAGAAAAATAGCGGTCTGCAGGCGGAGGAGGATAATAAACGATGCGAGTT
TACATGTAGAGCTCATTCTTTCGGTTGTGACATTGATGCAGTGGAAGTTC
AAGTTATACTTTTCCCGGATTTTGTTTGATACGTGGTACTGACAATGCGG
AGGGTTCGCACGCACGGTCCCTTTTTCTTCCTTCGTTTGTATTTTCCCCT
TCGGATGTGCCTTGGCAGTTGCCTTTACTTTCTTGTTTCACCCCTTCCCC
GGGAACCTTTCTATACCTTCTGAAGAAAAAGAATGAAAGACTTTTGTAGA
ACGCAGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGTGGTAGTGCAAGCA
GGTGGTAGTGCCAACCAAATCCTTCACTCTTTT
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protein sequence of NO02G01390.1

>NO02G01390.1-protein ID=NO02G01390.1-protein|Name=NO02G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MKLSLTCLLLVALLLVMGSDGFVPRVKAPARSSRTILREGGGFNFMEMGS
RFLNELLPWGDSSKGLWAGKRDAMVVKYMEKTGINREQAEREVDEYLKDK
DAYIAKARAEEAKQAKNKK*
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mRNA from alignment at chr2:415897..417392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01390.1 ID=NO02G01390.1|Name=NO02G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp|location=Sequence derived from alignment at chr2:415897..417392- (Nannochloropsis oceanica)
CAGGCGACATCAACAGCAGCAGGTCAACTGCTGGGCTTCTCCATCAGCCC
ACAGCTTCCCCACACACATAGACAAGCACCATGAAGCTTTCTTTGACGTG
CCTGCTCCTCGTCGCCCTTCTCCTTGTCATGGGTAGTGATGGCTTTGTCC
CGCGTGTCAAGGTAGGCTTTATGGAGCGCGAACGGGTTGGTAAGAGGAAC
AAGCACTCTATGCTTGAAGCCATGCATCCATTGGGGGAAGTAATGGACAT
GGAGGGAAGGCGAAACTTACATCAGAAGCAGATCAAAAGAAGGCGATGAT
TTCTTAGCAGTCGTTGCAGGCGTCAAAAATGCGCAGCATTCTCATCATTC
GAGTGCAAGGGCAGCATATTGTGGTAGGGCATACGAGAACGCTAAGGAAA
GGCAGGAAGAGAGAAGGAACGTCGCAACGACGTATGCCCCATCTTTCGAA
CTTTTCCGTGAAACTCATGCCGTCACTAACGTGTAGATTATTTTGACATC
GCAGGCCCCTGCCCGCAGCAGCCGCACCATCCTTCGGGAAGGTGGAGGGT
TTAACTTCATGGAGATGGGCTCTCGGTTCCTGAATGAGCTGTTGCCATGG
GGCGACTCGAGCAAGGGCTTGTGGGCTGGGAAGCGGGATGCGATGGTGGT
CAAGTACATGGAGAAAACAGGTGAGGATTTAGGATAAGAGGGACCGAGAA
GATGGGTGATGTATTTCTTGCATGTGTGAAATAATGAAATGAGGGAGGAG
GCTGACGTCAACTTGTCGAGGCGGCTTCTACGAGACGCCGAGGATGCGCA
GGATGTGATCTTTTTATTTCGATATTTCAATTTCGCACGCTCTTATCAAC
TTTGCACACATCCATCTATCAAATCTTTGCTCTACCAAAGGCATCAATAG
GGAGCAGGCCGAGCGGGAGGTTGACGAATACCTGAAAGACAAAGACGCCT
ACATCGCGAAGGCCCGCGCGGAGGAGGCGAAGCAAGCAAAAAATAAAAAA
TAATGTTTACGGAGACCTCATTATTTCTTAAAAGCACTGAAAAAATCATC
GCACAAGGACGGAAAAATGCACTCGAGTGAGTGTGAGTAGTGGTGTGAAA
ACGCCTTTCTGACAAGAAAAATAGCGGTCTGCAGGCGGAGGAGGATAATA
AACGATGCGAGTTTACATGTAGAGCTCATTCTTTCGGTTGTGACATTGAT
GCAGTGGAAGTTCAAGTTATACTTTTCCCGGATTTTGTTTGATACGTGGT
ACTGACAATGCGGAGGGTTCGCACGCACGGTCCCTTTTTCTTCCTTCGTT
TGTATTTTCCCCTTCGGATGTGCCTTGGCAGTTGCCTTTACTTTCTTGTT
TCACCCCTTCCCCGGGAACCTTTCTATACCTTCTGAAGAAAAAGAATGAA
AGACTTTTGTAGAACGCAGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGT
GGTAGTGCAAGCAGGTGGTAGTGCCAACCAAATCCTTCACTCTTTT
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Coding sequence (CDS) from alignment at chr2:415897..417392-

>NO02G01390.1 ID=NO02G01390.1|Name=NO02G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at chr2:415897..417392- (Nannochloropsis oceanica)
ATGAAGCTTTCTTTGACGTGCCTGCTCCTCGTCGCCCTTCTCCTTGTCAT
GGGTAGTGATGGCTTTGTCCCGCGTGTCAAGGCCCCTGCCCGCAGCAGCC
GCACCATCCTTCGGGAAGGTGGAGGGTTTAACTTCATGGAGATGGGCTCT
CGGTTCCTGAATGAGCTGTTGCCATGGGGCGACTCGAGCAAGGGCTTGTG
GGCTGGGAAGCGGGATGCGATGGTGGTCAAGTACATGGAGAAAACAGGCA
TCAATAGGGAGCAGGCCGAGCGGGAGGTTGACGAATACCTGAAAGACAAA
GACGCCTACATCGCGAAGGCCCGCGCGGAGGAGGCGAAGCAAGCAAAAAA
TAAAAAATAA
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Synonyms
Publications