NO02G01230.1, NO02G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01230.1
Unique NameNO02G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1251
Alignment locationchr2:375109..376359 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:375109..376359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01230.1 vs.
Match: EWM30472.1 (solute carrier family 35 member b2 [Nannochloropsis gaditana])

HSP 1 Score: 563.9 bits (1452), Expect = 4.100e-157
Identity = 296/404 (73.27%), Postives = 335/404 (82.92%), Query Frame = 0 
Query:   12 METGSAGGLERDFEKERLLASLTPPPATGSGAHSGDTSKSHG--KAGMVLGGSSSSTGTEDSMRGKAIRMVACFVGLQASYITWGLVQERIVTKAYGEGDDAEFFPSSAFLVFGNRFLALFLAAAIVYWPWFGQEEGTGASSASVSGSCASRGLKAPLLQYAPASLSNILSSWAQYEALKYISFPTQVLSKSSKIIPVMLVGRLLHRKSYPWREYAEAAFITLGVTIFSLNEKAPKAGHEGGSDSILGYFLLALYLTCDSFTSQWQDKVFKKFHVSQFQMMLGINLCSIVFTGASLLQTGQGGTSWAFILRHPDAAQHVFLLSLSSATGQLFIFYTIKQFGAIIFTIMMTIRQMLSMILSCLIFAHPMAWPSFVGAMICFTTIGVRIHRNIQRGKPRKGSAAGS 414
            +E GS  G  R+ EKERLLAS    P TGSG+HS D  +  G   + M+L GS+S    +DSM+ KAIR+V CF+GLQASYI WGLVQER+VTKAYGEG DAEFFPSSAFLVFGNR LAL ++A IVYWPW         S+ S + +   +GLKAPL QYAPASLSNILSSWAQYEALKY+SFPTQVLSKSSKIIPVMLVGRLLHR+SYPW EY +AA ITLGVTIFSLNEK PKAGH+GG+DS LGY LLA+YL CDSFTSQWQDKVFKKFHVSQFQMMLG+NLCSI+FTGASLLQTGQG +S AF++RHPDAAQHVF+LSL SA+GQLFIFYTIKQFGAI+FTIMMTIRQMLSMILSC +FAHP+AW SF+GA++CF TI +RI RN+ RGK R  S  GS
Sbjct:   77 LEDGSMTG--RESEKERLLAS---SPVTGSGSHSTDEKEKPGGVPSRMLLSGSTSG---DDSMKSKAIRLVGCFLGLQASYIIWGLVQERMVTKAYGEGADAEFFPSSAFLVFGNRALALVVSATIVYWPW---------SNRSNTDAVVPQGLKAPLWQYAPASLSNILSSWAQYEALKYVSFPTQVLSKSSKIIPVMLVGRLLHRRSYPWAEYVDAALITLGVTIFSLNEKKPKAGHDGGADSTLGYILLAMYLMCDSFTSQWQDKVFKKFHVSQFQMMLGVNLCSIIFTGASLLQTGQGASSLAFMMRHPDAAQHVFILSLCSASGQLFIFYTIKQFGAIVFTIMMTIRQMLSMILSCALFAHPLAWQSFIGALLCFGTIALRIKRNL-RGKQRATSGTGS 462
The following BLAST results are available for this feature:
BLAST of NO02G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30472.14.100e-15773.27solute carrier family 35 member b2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01230NO02G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01230.1NO02G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01230.1.cds1NO02G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01230.1 ID=NO02G01230.1|Name=NO02G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
ATGTCGTCCAACGTGGAAATGACCCATGGGGACATGGAGACGGGCAGCGC
GGGTGGCTTGGAACGGGATTTTGAGAAAGAAAGGCTTCTAGCTTCTTTGA
CACCGCCCCCAGCGACGGGAAGTGGCGCACATAGCGGAGACACATCCAAG
AGTCATGGCAAGGCAGGGATGGTGTTGGGGGGGAGCAGCAGTAGCACCGG
CACGGAGGACAGCATGAGGGGCAAGGCCATCCGTATGGTTGCCTGTTTTG
TGGGGCTCCAAGCCTCGTACATAACTTGGGGACTGGTGCAAGAACGAATC
GTCACTAAGGCATATGGCGAGGGGGACGACGCGGAATTCTTCCCTTCGTC
CGCCTTTTTGGTGTTCGGCAACAGGTTCCTCGCCCTATTCCTGGCCGCCG
CCATTGTCTACTGGCCCTGGTTCGGTCAAGAGGAAGGGACAGGGGCATCA
TCCGCGTCGGTGAGTGGATCGTGCGCCTCACGGGGGTTGAAGGCGCCGTT
GTTACAGTATGCCCCCGCGTCGCTGAGTAACATTTTGAGCAGTTGGGCTC
AGTATGAAGCGTTGAAGTACATATCCTTTCCCACGCAAGTGCTGTCCAAA
TCGAGTAAGATTATTCCGGTCATGCTGGTGGGGAGGCTATTGCACCGGAA
GTCGTACCCGTGGAGGGAGTACGCGGAGGCGGCGTTTATCACGTTGGGAG
TGACAATTTTTTCTCTGAATGAGAAAGCTCCGAAGGCAGGGCACGAGGGA
GGATCCGATTCAATCCTAGGGTACTTCCTTTTGGCCCTATACTTGACATG
TGACTCCTTCACGAGTCAATGGCAGGATAAGGTGTTCAAGAAGTTCCATG
TCTCGCAGTTCCAGATGATGCTGGGTATCAATTTGTGCTCAATTGTTTTT
ACTGGTGCCTCTTTGCTGCAGACCGGCCAGGGGGGGACGTCGTGGGCCTT
CATTCTTCGACATCCCGACGCGGCGCAACATGTTTTCCTCCTCTCCCTTT
CATCGGCCACGGGTCAATTGTTTATTTTCTACACGATCAAACAGTTTGGG
GCGATTATATTCACCATCATGATGACGATTCGGCAGATGCTGAGTATGAT
CTTGTCCTGCCTCATTTTTGCGCACCCCATGGCCTGGCCGAGTTTTGTGG
GGGCGATGATTTGCTTCACCACCATCGGTGTACGTATTCATCGAAACATT
CAGCGGGGGAAGCCGCGGAAAGGTAGTGCAGCGGGAAGTGGGGGGTCGTG
A
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protein sequence of NO02G01230.1

>NO02G01230.1-protein ID=NO02G01230.1-protein|Name=NO02G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSSNVEMTHGDMETGSAGGLERDFEKERLLASLTPPPATGSGAHSGDTSK
SHGKAGMVLGGSSSSTGTEDSMRGKAIRMVACFVGLQASYITWGLVQERI
VTKAYGEGDDAEFFPSSAFLVFGNRFLALFLAAAIVYWPWFGQEEGTGAS
SASVSGSCASRGLKAPLLQYAPASLSNILSSWAQYEALKYISFPTQVLSK
SSKIIPVMLVGRLLHRKSYPWREYAEAAFITLGVTIFSLNEKAPKAGHEG
GSDSILGYFLLALYLTCDSFTSQWQDKVFKKFHVSQFQMMLGINLCSIVF
TGASLLQTGQGGTSWAFILRHPDAAQHVFLLSLSSATGQLFIFYTIKQFG
AIIFTIMMTIRQMLSMILSCLIFAHPMAWPSFVGAMICFTTIGVRIHRNI
QRGKPRKGSAAGSGGS*
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mRNA from alignment at chr2:375109..376359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01230.1 ID=NO02G01230.1|Name=NO02G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp|location=Sequence derived from alignment at chr2:375109..376359- (Nannochloropsis oceanica)
ATGTCGTCCAACGTGGAAATGACCCATGGGGACATGGAGACGGGCAGCGC
GGGTGGCTTGGAACGGGATTTTGAGAAAGAAAGGCTTCTAGCTTCTTTGA
CACCGCCCCCAGCGACGGGAAGTGGCGCACATAGCGGAGACACATCCAAG
AGTCATGGCAAGGCAGGGATGGTGTTGGGGGGGAGCAGCAGTAGCACCGG
CACGGAGGACAGCATGAGGGGCAAGGCCATCCGTATGGTTGCCTGTTTTG
TGGGGCTCCAAGCCTCGTACATAACTTGGGGACTGGTGCAAGAACGAATC
GTCACTAAGGCATATGGCGAGGGGGACGACGCGGAATTCTTCCCTTCGTC
CGCCTTTTTGGTGTTCGGCAACAGGTTCCTCGCCCTATTCCTGGCCGCCG
CCATTGTCTACTGGCCCTGGTTCGGTCAAGAGGAAGGGACAGGGGCATCA
TCCGCGTCGGTGAGTGGATCGTGCGCCTCACGGGGGTTGAAGGCGCCGTT
GTTACAGTATGCCCCCGCGTCGCTGAGTAACATTTTGAGCAGTTGGGCTC
AGTATGAAGCGTTGAAGTACATATCCTTTCCCACGCAAGTGCTGTCCAAA
TCGAGTAAGATTATTCCGGTCATGCTGGTGGGGAGGCTATTGCACCGGAA
GTCGTACCCGTGGAGGGAGTACGCGGAGGCGGCGTTTATCACGTTGGGAG
TGACAATTTTTTCTCTGAATGAGAAAGCTCCGAAGGCAGGGCACGAGGGA
GGATCCGATTCAATCCTAGGGTACTTCCTTTTGGCCCTATACTTGACATG
TGACTCCTTCACGAGTCAATGGCAGGATAAGGTGTTCAAGAAGTTCCATG
TCTCGCAGTTCCAGATGATGCTGGGTATCAATTTGTGCTCAATTGTTTTT
ACTGGTGCCTCTTTGCTGCAGACCGGCCAGGGGGGGACGTCGTGGGCCTT
CATTCTTCGACATCCCGACGCGGCGCAACATGTTTTCCTCCTCTCCCTTT
CATCGGCCACGGGTCAATTGTTTATTTTCTACACGATCAAACAGTTTGGG
GCGATTATATTCACCATCATGATGACGATTCGGCAGATGCTGAGTATGAT
CTTGTCCTGCCTCATTTTTGCGCACCCCATGGCCTGGCCGAGTTTTGTGG
GGGCGATGATTTGCTTCACCACCATCGGTGTACGTATTCATCGAAACATT
CAGCGGGGGAAGCCGCGGAAAGGTAGTGCAGCGGGAAGTGGGGGGTCGTG
A
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Coding sequence (CDS) from alignment at chr2:375109..376359-

>NO02G01230.1 ID=NO02G01230.1|Name=NO02G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr2:375109..376359- (Nannochloropsis oceanica)
ATGTCGTCCAACGTGGAAATGACCCATGGGGACATGGAGACGGGCAGCGC
GGGTGGCTTGGAACGGGATTTTGAGAAAGAAAGGCTTCTAGCTTCTTTGA
CACCGCCCCCAGCGACGGGAAGTGGCGCACATAGCGGAGACACATCCAAG
AGTCATGGCAAGGCAGGGATGGTGTTGGGGGGGAGCAGCAGTAGCACCGG
CACGGAGGACAGCATGAGGGGCAAGGCCATCCGTATGGTTGCCTGTTTTG
TGGGGCTCCAAGCCTCGTACATAACTTGGGGACTGGTGCAAGAACGAATC
GTCACTAAGGCATATGGCGAGGGGGACGACGCGGAATTCTTCCCTTCGTC
CGCCTTTTTGGTGTTCGGCAACAGGTTCCTCGCCCTATTCCTGGCCGCCG
CCATTGTCTACTGGCCCTGGTTCGGTCAAGAGGAAGGGACAGGGGCATCA
TCCGCGTCGGTGAGTGGATCGTGCGCCTCACGGGGGTTGAAGGCGCCGTT
GTTACAGTATGCCCCCGCGTCGCTGAGTAACATTTTGAGCAGTTGGGCTC
AGTATGAAGCGTTGAAGTACATATCCTTTCCCACGCAAGTGCTGTCCAAA
TCGAGTAAGATTATTCCGGTCATGCTGGTGGGGAGGCTATTGCACCGGAA
GTCGTACCCGTGGAGGGAGTACGCGGAGGCGGCGTTTATCACGTTGGGAG
TGACAATTTTTTCTCTGAATGAGAAAGCTCCGAAGGCAGGGCACGAGGGA
GGATCCGATTCAATCCTAGGGTACTTCCTTTTGGCCCTATACTTGACATG
TGACTCCTTCACGAGTCAATGGCAGGATAAGGTGTTCAAGAAGTTCCATG
TCTCGCAGTTCCAGATGATGCTGGGTATCAATTTGTGCTCAATTGTTTTT
ACTGGTGCCTCTTTGCTGCAGACCGGCCAGGGGGGGACGTCGTGGGCCTT
CATTCTTCGACATCCCGACGCGGCGCAACATGTTTTCCTCCTCTCCCTTT
CATCGGCCACGGGTCAATTGTTTATTTTCTACACGATCAAACAGTTTGGG
GCGATTATATTCACCATCATGATGACGATTCGGCAGATGCTGAGTATGAT
CTTGTCCTGCCTCATTTTTGCGCACCCCATGGCCTGGCCGAGTTTTGTGG
GGGCGATGATTTGCTTCACCACCATCGGTGTACGTATTCATCGAAACATT
CAGCGGGGGAAGCCGCGGAAAGGTAGTGCAGCGGGAAGTGGGGGGTCGTG
A
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Synonyms
Publications