NO02G01180.1, NO02G01180.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G01180.1
Unique Name	NO02G01180.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2551
Alignment location	chr2:365047..367597 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:365047..367597 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G01180.1 vs.
Match: XP_005855109.1 (prolyl 4-hydroxylase, partial [Nannochloropsis gaditana CCMP526]; EKU21252.1 prolyl 4-hydroxylase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 564.3 bits (1453), Expect = 3.900e-157
Identity = 259/431 (60.09%), Postives = 332/431 (77.03%), Query Frame = 0

Query:   12 LAVLPTLAQAIHYFTGLDSLAGLEIVGITDSNGMVVKNTLVSFSNKQCIQDLYDLDFPFNFINLPSTTHELANVLVETPSNELMDFFDIHDCKSFIYFTAGDSLQAKGTKLTPTSGHELDDFFWEKQRLPNVKIRNDLEKPVNVYWESWDGQPREVSIMELVPGQEQSFGSFLSHTLIFRDVENNMRLMARAVITDGSKPIVISDLLAGPADTEVLQLTDHQVKVWRGRLRTNISRLKQNEAQPPNVRTFTDVGFRKLRIPANLLRHLQEFLEQNEGKRVDEGWNEDDLHVNFYESMTTVVALDHEMRELVFGTIKPILESWIGGEKLDPTSTYGIRRYYNGSVLRDHVDIGATHIVSAILNLGQDVDKVWPLQILDHEGRRHFIEMVAGDMCLYESATSIHGRTQAMVGRTFDNVFTHFQPVKPFDVVAA 443
            +A+ P  A A++YFTGLDS   ++ +GITD  G++ KNTL SFSN +C+ DL+D+ FPF F++LP  THELAN+LVETP NELM FF++ DCKSF  FTAGDS+  KG K+ P+    L+D FW  QRLPN++IRNDL++ V+V+WE  DG   E  ++ L  GQE+ F SFL    IFRD  ++MRL+AR VITDG+KP+++S  L G  DTE LQL ++Q  VWRGR  TN++RL+QNE QP  V+ +T  GF+K+ +P+ L   L E+L ++E +R+DE W++DDLHVNFYE MTT+V  D +MR++VF T+KPILESW+GGEKL PTSTYGIRRYYNGS+LRDHVDIG THIVSAILN+ QDVD+VWPL ILDH+GRRHFI+M  G+MCLYESAT++HGRTQA+ GR FDN+F HF P  PF V A+
Sbjct:   30 VALGPYPAAAVNYFTGLDSFVAMKALGITDGAGVLQKNTLFSFSNNECVHDLHDIGFPFIFMDLPGATHELANILVETPPNELMSFFNVSDCKSFYSFTAGDSIHDKGNKIVPSDQASLEDAFWHDQRLPNLRIRNDLQRVVDVFWELRDGSLTEFRVVRLNSGQEERFRSFLGDIFIFRDAYDDMRLLARTVITDGNKPLILSQTLMGKGDTETLQLNENQADVWRGRQNTNVARLRQNELQPSTVKKYTGGGFKKMLMPSYLHTRLLEYLARHEDQRMDEPWHKDDLHVNFYEKMTTIVYTDRDMRDIVFKTLKPILESWVGGEKLMPTSTYGIRRYYNGSILRDHVDIGRTHIVSAILNVRQDVDEVWPLSILDHQGRRHFIDMAPGEMCLYESATALHGRTQALRGRYFDNLFAHFAPAAPFTVNAS 460

The following BLAST results are available for this feature:

BLAST of NO02G01180.1 vs.

BLAST of NO02G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855109.1	3.900e-157	60.09	prolyl 4-hydroxylase, partial [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G01180	NO02G01180	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01180.1	NO02G01180.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01180.1.cds1	NO02G01180.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:365047..367597-
coding sequence from alignment at chr2:365047..367597-

mRNA sequence

>NO02G01180.1 ID=NO02G01180.1|Name=NO02G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2551bp
GAGAAAATGGACGATTATATTTCATTTAAATGAGTCTGCTGGGAGTTAGT
AGTTATACACCCAGTAGGGTATTTACCGACCACAAGCCATCTATAGACAA
GGAGGGTTAGGAGGTTGGTCTGCATGATAGTGACTGAACTATTTTTCCCT
CTCCAACCATTCACGGCATCTTCCGCCAGGCATGTTGATGAATAAAAGTT
CCTGGAAAGAGGCTAAGTCATGACCAATTGTAGTCTAACAGAAGAAGAAA
TGACATTCGTTTCGGGCCGTTGTTTCCGAAGGTTTTGAACCTGGCGAGCG
CACAATGCGCCGCGCTTGTGGCCTAACGCTGCGCCTATACATTAGGGTGT
AGGGTATAGGGTAGGGTTGGTAGGGTAGTACCCTCGGGCGCTAGTGCAGG
CACTTGGTGGGGTCTGCATGAATGCTGCCGCGGCAGTGTGCAAAAGAAGC
AATGCAGCACAGCAGCATTTAAAACATATGGTCCATACTCGAAGCTCCGA
GTCATACGACCTTTTCAGGACTCACACAGACGCATCTAACACGGGCGGTG
ACACATCCACGCTATTCCTTCCCCTCGCTGTCGGTATACGGCTACTAATT
TGTCGGCCGCGTCGGCCATCTCCGGCGTCTAACCCATACACTACTAAAAC
ACACAGGTGCACGGTGCACAAATAGAGCAAGTAAGTGCAGGAAAGCGTGC
CTGATTGCAGGAGAAAGTTTTTTTTTCGTGTGACACACACAGACAACATG
AGTCGTGGCCGCGTCTTTTTTGCTTTGGGCCTTGCAGTCCTACCCACCCT
GGCGCAAGCCATCCATTACTTCACGGGCTTAGATTCCCTGGCCGGCCTCG
AGATTGTAGGGATAACGGATTCAAATGGCATGGTGGTGAAAAACACATTG
GTTTCGTTTTCGAACAAGCAGTGCATCCAAGACCTGTACGACTTGGATTT
TCCCTTCAACTTTATTAACTTGCCAAGCACAACGCACGAGCTCGCTAACG
TCCTTGTGGAGACTCCCAGCAATGAATTGATGGACTTTTTCGACATTCAT
GATTGCAAGTCTTTCATTTACTTCACCGCGGGTGATTCCTTGCAAGCAAA
AGGCACGAAGCTTACACCCACAAGTGGACATGAATTGGACGATTTCTTTT
GGGAGAAGCAGCGTTTACCCAATGTCAAAATTCGAAACGACTTGGAGAAA
CCTGTCAATGTTTATTGGGAGTCGTGGGATGGACAGCCAAGGGAGGTAAG
CATCATGGAGCTCGTCCCCGGGCAAGAACAGAGCTTTGGCTCCTTCTTAA
GCCATACACTGATTTTTCGGGATGTGGAGAACAATATGCGTTTGATGGCC
CGTGCGGTGATTACGGACGGTAGCAAGCCAATCGTCATCTCCGATCTCTT
GGCGGGGCCAGCAGACACAGAGGTGTTGCAGCTGACAGACCATCAAGTGA
AGGTGTGGAGAGGCCGTCTCAGGACCAATATATCTCGCCTCAAGCAAAAT
GAAGCACAGCCCCCTAATGTGCGGACGTTTACAGACGTGGGTTTTAGAAA
GCTGCGTATTCCCGCCAACTTGCTCCGGCACCTTCAAGAGTTCCTTGAGC
AGAACGAAGGCAAGCGCGTGGACGAAGGCTGGAATGAGGATGATCTGCAC
GTAAACTTCTACGAGAGCATGACAACGGTTGTCGCACTTGATCACGAAAT
GCGCGAGCTCGTGTTTGGCACCATTAAACCTATTTTGGAGTCGTGGATAG
GCGGAGAGAAGCTGGATCCCACCAGCACGTACGGCATCCGCCGCTACTAC
AACGGGAGCGTCTTGCGCGATCACGTCGACATTGGCGCCACACACATCGT
CTCGGCTATCCTGAATCTCGGGCAGGACGTGGATAAAGTCTGGCCCTTGC
AAATTCTCGATCACGAGGGGAGACGGCACTTTATTGAGATGGTGGCCGGA
GACATGTGCTTGTATGAATCTGCGACCTCTATCCACGGCAGGACTCAAGC
GATGGTGGGGAGGACGTTTGACAATGTATTCACTCACTTTCAGCCAGTAA
AGCCCTTTGATGTTGTGGCTGCTGAGGGGGTGCATGCGGTCGTGCACCCA
ATGCTGACGGAGGAACAGGAGTGGTTGGAGGCGGAGGGAGAGCTGGAAGA
AGAGGGTGAGGAAGAGGGGGGAATCGAGAACGTGGAGGGGAAAGGGTTGG
AGTTCGAGGAGGGTGAAATCGGAGATAGGCTGGTCGATGACAAGATGGGG
AGGGGTCAGCAGCATAAGCCGGTTGATAACTTTGAGGAAGGAACGGGGCT
GATGGAGGAAATGTGAGGGAAAAGGAGGGGGCAAAAGGGACGCTAGTAGA
GAGGATGGAGAAGGCTGTGCTGCGCTGAAATGGTGAATATGGATAAATTG
GATGTGCTGTAAGTACCTTACAAGAAACCGAATTCATTTCCCTTCCTTCC
AGCCAGATGTATGCTTGTGCTCCCCATGTGCATATATTCGATAGCCACAG
ATACACAACAGTAAAATGAAAGAATAGCACTCGATGGCATCAAGCGCCCC
T

protein sequence of NO02G01180.1

>NO02G01180.1-protein ID=NO02G01180.1-protein|Name=NO02G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MSRGRVFFALGLAVLPTLAQAIHYFTGLDSLAGLEIVGITDSNGMVVKNT
LVSFSNKQCIQDLYDLDFPFNFINLPSTTHELANVLVETPSNELMDFFDI
HDCKSFIYFTAGDSLQAKGTKLTPTSGHELDDFFWEKQRLPNVKIRNDLE
KPVNVYWESWDGQPREVSIMELVPGQEQSFGSFLSHTLIFRDVENNMRLM
ARAVITDGSKPIVISDLLAGPADTEVLQLTDHQVKVWRGRLRTNISRLKQ
NEAQPPNVRTFTDVGFRKLRIPANLLRHLQEFLEQNEGKRVDEGWNEDDL
HVNFYESMTTVVALDHEMRELVFGTIKPILESWIGGEKLDPTSTYGIRRY
YNGSVLRDHVDIGATHIVSAILNLGQDVDKVWPLQILDHEGRRHFIEMVA
GDMCLYESATSIHGRTQAMVGRTFDNVFTHFQPVKPFDVVAAEGVHAVVH
PMLTEEQEWLEAEGELEEEGEEEGGIENVEGKGLEFEEGEIGDRLVDDKM
GRGQQHKPVDNFEEGTGLMEEM*

mRNA from alignment at chr2:365047..367597-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G01180.1 ID=NO02G01180.1|Name=NO02G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2551bp|location=Sequence derived from alignment at chr2:365047..367597- (Nannochloropsis oceanica)
GAGAAAATGGACGATTATATTTCATTTAAATGAGTCTGCTGGGAGTTAGT
AGTTATACACCCAGTAGGGTATTTACCGACCACAAGCCATCTATAGACAA
GGAGGGTTAGGAGGTTGGTCTGCATGATAGTGACTGAACTATTTTTCCCT
CTCCAACCATTCACGGCATCTTCCGCCAGGCATGTTGATGAATAAAAGTT
CCTGGAAAGAGGCTAAGTCATGACCAATTGTAGTCTAACAGAAGAAGAAA
TGACATTCGTTTCGGGCCGTTGTTTCCGAAGGTTTTGAACCTGGCGAGCG
CACAATGCGCCGCGCTTGTGGCCTAACGCTGCGCCTATACATTAGGGTGT
AGGGTATAGGGTAGGGTTGGTAGGGTAGTACCCTCGGGCGCTAGTGCAGG
CACTTGGTGGGGTCTGCATGAATGCTGCCGCGGCAGTGTGCAAAAGAAGC
AATGCAGCACAGCAGCATTTAAAACATATGGTCCATACTCGAAGCTCCGA
GTCATACGACCTTTTCAGGACTCACACAGACGCATCTAACACGGGCGGTG
ACACATCCACGCTATTCCTTCCCCTCGCTGTCGGTATACGGCTACTAATT
TGTCGGCCGCGTCGGCCATCTCCGGCGTCTAACCCATACACTACTAAAAC
ACACAGGTGCACGGTGCACAAATAGAGCAAGTAAGTGCAGGAAAGCGTGC
CTGATTGCAGGAGAAAGTTTTTTTTTCGTGTGACACACACAGACAACATG
AGTCGTGGCCGCGTCTTTTTTGCTTTGGGCCTTGCAGTCCTACCCACCCT
GGCGCAAGCCATCCATTACTTCACGGGCTTAGATTCCCTGGCCGGCCTCG
AGATTGTAGGGATAACGGATTCAAATGGCATGGTGGTGAAAAACACATTG
GTTTCGTTTTCGAACAAGCAGTGCATCCAAGACCTGTACGACTTGGATTT
TCCCTTCAACTTTATTAACTTGCCAAGCACAACGCACGAGCTCGCTAACG
TCCTTGTGGAGACTCCCAGCAATGAATTGATGGACTTTTTCGACATTCAT
GATTGCAAGTCTTTCATTTACTTCACCGCGGGTGATTCCTTGCAAGCAAA
AGGCACGAAGCTTACACCCACAAGTGGACATGAATTGGACGATTTCTTTT
GGGAGAAGCAGCGTTTACCCAATGTCAAAATTCGAAACGACTTGGAGAAA
CCTGTCAATGTTTATTGGGAGTCGTGGGATGGACAGCCAAGGGAGGTAAG
CATCATGGAGCTCGTCCCCGGGCAAGAACAGAGCTTTGGCTCCTTCTTAA
GCCATACACTGATTTTTCGGGATGTGGAGAACAATATGCGTTTGATGGCC
CGTGCGGTGATTACGGACGGTAGCAAGCCAATCGTCATCTCCGATCTCTT
GGCGGGGCCAGCAGACACAGAGGTGTTGCAGCTGACAGACCATCAAGTGA
AGGTGTGGAGAGGCCGTCTCAGGACCAATATATCTCGCCTCAAGCAAAAT
GAAGCACAGCCCCCTAATGTGCGGACGTTTACAGACGTGGGTTTTAGAAA
GCTGCGTATTCCCGCCAACTTGCTCCGGCACCTTCAAGAGTTCCTTGAGC
AGAACGAAGGCAAGCGCGTGGACGAAGGCTGGAATGAGGATGATCTGCAC
GTAAACTTCTACGAGAGCATGACAACGGTTGTCGCACTTGATCACGAAAT
GCGCGAGCTCGTGTTTGGCACCATTAAACCTATTTTGGAGTCGTGGATAG
GCGGAGAGAAGCTGGATCCCACCAGCACGTACGGCATCCGCCGCTACTAC
AACGGGAGCGTCTTGCGCGATCACGTCGACATTGGCGCCACACACATCGT
CTCGGCTATCCTGAATCTCGGGCAGGACGTGGATAAAGTCTGGCCCTTGC
AAATTCTCGATCACGAGGGGAGACGGCACTTTATTGAGATGGTGGCCGGA
GACATGTGCTTGTATGAATCTGCGACCTCTATCCACGGCAGGACTCAAGC
GATGGTGGGGAGGACGTTTGACAATGTATTCACTCACTTTCAGCCAGTAA
AGCCCTTTGATGTTGTGGCTGCTGAGGGGGTGCATGCGGTCGTGCACCCA
ATGCTGACGGAGGAACAGGAGTGGTTGGAGGCGGAGGGAGAGCTGGAAGA
AGAGGGTGAGGAAGAGGGGGGAATCGAGAACGTGGAGGGGAAAGGGTTGG
AGTTCGAGGAGGGTGAAATCGGAGATAGGCTGGTCGATGACAAGATGGGG
AGGGGTCAGCAGCATAAGCCGGTTGATAACTTTGAGGAAGGAACGGGGCT
GATGGAGGAAATGTGAGGGAAAAGGAGGGGGCAAAAGGGACGCTAGTAGA
GAGGATGGAGAAGGCTGTGCTGCGCTGAAATGGTGAATATGGATAAATTG
GATGTGCTGTAAGTACCTTACAAGAAACCGAATTCATTTCCCTTCCTTCC
AGCCAGATGTATGCTTGTGCTCCCCATGTGCATATATTCGATAGCCACAG
ATACACAACAGTAAAATGAAAGAATAGCACTCGATGGCATCAAGCGCCCC
T

Coding sequence (CDS) from alignment at chr2:365047..367597-

>NO02G01180.1 ID=NO02G01180.1|Name=NO02G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr2:365047..367597- (Nannochloropsis oceanica)
ATGAGTCGTGGCCGCGTCTTTTTTGCTTTGGGCCTTGCAGTCCTACCCAC
CCTGGCGCAAGCCATCCATTACTTCACGGGCTTAGATTCCCTGGCCGGCC
TCGAGATTGTAGGGATAACGGATTCAAATGGCATGGTGGTGAAAAACACA
TTGGTTTCGTTTTCGAACAAGCAGTGCATCCAAGACCTGTACGACTTGGA
TTTTCCCTTCAACTTTATTAACTTGCCAAGCACAACGCACGAGCTCGCTA
ACGTCCTTGTGGAGACTCCCAGCAATGAATTGATGGACTTTTTCGACATT
CATGATTGCAAGTCTTTCATTTACTTCACCGCGGGTGATTCCTTGCAAGC
AAAAGGCACGAAGCTTACACCCACAAGTGGACATGAATTGGACGATTTCT
TTTGGGAGAAGCAGCGTTTACCCAATGTCAAAATTCGAAACGACTTGGAG
AAACCTGTCAATGTTTATTGGGAGTCGTGGGATGGACAGCCAAGGGAGGT
AAGCATCATGGAGCTCGTCCCCGGGCAAGAACAGAGCTTTGGCTCCTTCT
TAAGCCATACACTGATTTTTCGGGATGTGGAGAACAATATGCGTTTGATG
GCCCGTGCGGTGATTACGGACGGTAGCAAGCCAATCGTCATCTCCGATCT
CTTGGCGGGGCCAGCAGACACAGAGGTGTTGCAGCTGACAGACCATCAAG
TGAAGGTGTGGAGAGGCCGTCTCAGGACCAATATATCTCGCCTCAAGCAA
AATGAAGCACAGCCCCCTAATGTGCGGACGTTTACAGACGTGGGTTTTAG
AAAGCTGCGTATTCCCGCCAACTTGCTCCGGCACCTTCAAGAGTTCCTTG
AGCAGAACGAAGGCAAGCGCGTGGACGAAGGCTGGAATGAGGATGATCTG
CACGTAAACTTCTACGAGAGCATGACAACGGTTGTCGCACTTGATCACGA
AATGCGCGAGCTCGTGTTTGGCACCATTAAACCTATTTTGGAGTCGTGGA
TAGGCGGAGAGAAGCTGGATCCCACCAGCACGTACGGCATCCGCCGCTAC
TACAACGGGAGCGTCTTGCGCGATCACGTCGACATTGGCGCCACACACAT
CGTCTCGGCTATCCTGAATCTCGGGCAGGACGTGGATAAAGTCTGGCCCT
TGCAAATTCTCGATCACGAGGGGAGACGGCACTTTATTGAGATGGTGGCC
GGAGACATGTGCTTGTATGAATCTGCGACCTCTATCCACGGCAGGACTCA
AGCGATGGTGGGGAGGACGTTTGACAATGTATTCACTCACTTTCAGCCAG
TAAAGCCCTTTGATGTTGTGGCTGCTGAGGGGGTGCATGCGGTCGTGCAC
CCAATGCTGACGGAGGAACAGGAGTGGTTGGAGGCGGAGGGAGAGCTGGA
AGAAGAGGGTGAGGAAGAGGGGGGAATCGAGAACGTGGAGGGGAAAGGGT
TGGAGTTCGAGGAGGGTGAAATCGGAGATAGGCTGGTCGATGACAAGATG
GGGAGGGGTCAGCAGCATAAGCCGGTTGATAACTTTGAGGAAGGAACGGG
GCTGATGGAGGAAATGTGA

Synonyms

Publications