NO02G00960.1, NO02G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00960.1
Unique NameNO02G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1962
Alignment locationchr2:302090..304570 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:302090..304570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00960.1 vs.
Match: EWM30562.1 (putative transporter [Nannochloropsis gaditana])

HSP 1 Score: 515.0 bits (1325), Expect = 3.400e-142
Identity = 310/593 (52.28%), Postives = 391/593 (65.94%), Query Frame = 0 
Query:   97 ATPQDTSDSPTPRPLTFTTLLPAGAALLALAMTISHFTTEGLVERTFVSALVICSALAAVAYRDTLPFL-RLRGGREGYNTLGGKGKAAPATHVLSAVQQKDFASFQIRFLVIQLMATFIDFIQGPYLYKVYENYGFGMKDIATLYLLGFASSAVSSPFAGVFADTYGRRLGCVAFALLQASSSLLLHHPSFPLLTLGRVLSGIATSFLATCFEAWMISEHNRLAFPPSLVKNTFSMYVFLMGVVAVWSGAVAGVVEKEGGVLAPFDVCALVAGGLAVLLPLVWQEENYGMGRDGEPGKKREKEEGKECHGSSSSSSSSSSSGNNNNNNNNDSRSSGSGSTFLSSVSFSLRPSLPSLLRSIILPTNKNILWVGLTQAFFEAAMFTWVFLWTPSLDTGEITSLNLGLVFATL--------------------------------MVVLLGALVGGGVAMMAAAWPGEVGVAWLLIDFVVFEASVGVFYAAMGSIRARVIPETARATVMNGIRVLLNVLIVFMYLGPVRLDVPMGEKRPLVLGLCSAMVFVASACHAQWMRGEGTGTGKRLERGSKKQEEESLLEIV---SEKAQ 654
            A P   ++  T RP+     L  G ALL LA  I+  TT   VERT     V C  LAA+AY++ L  L  +  G + Y+    K  A  A+ VLS VQQ++F +FQ RFL++QL+ATF+DF+QGPYLYK+YENY + M DIATLYLLGF SSA+SSPFAG+ AD YGRRLGC+AFA+LQ +S LLLH+PSF LL +GRVLSGIATSFL+TCFEAWMISEHNR +FPP+L+ NTFS+YVF+MGV AV SG VAG+ +++GGVLA FDVCA  A GLA+L+PL+W EENYG GR GE G ++   E         SS  +++              S S S    S +F  R + P  L +I+    + ++W+GLTQAFFEAAMFTWVF+WTPSLDTGEI SLNLGLVFATL                                  VL G+L  GGV +  A+WP  +   WLL+ F +FEASVGV++AAMG+IRAR+IPE  RATVMN IR++LN+L+V MY+GPVRL +P+ EKRPLVLGLCSAM+F+AS CHAQ +       G+ +    +K  +E +  +    S KAQ
Sbjct:   17 AAPHHVNEGRT-RPVHVFRSLLTGVALLGLATAIACVTTSDPVERTLTGTFVSCIVLAAIAYKEVLFSLGSMSFGSKTYDAR--KVDATSASLVLSPVQQQEFDNFQRRFLMVQLLATFVDFLQGPYLYKLYENYNYDMNDIATLYLLGFCSSALSSPFAGILADMYGRRLGCMAFAVLQTASCLLLHYPSFALLAMGRVLSGIATSFLSTCFEAWMISEHNRRSFPPALLTNTFSIYVFMMGVAAVASGGVAGLAQEQGGVLAAFDVCAAAALGLAILIPLLWTEENYGSGRKGESGLRKTLVENAPTSIVDPSSVPAAAP------------PSTSPSWVPDSPNFLSRKTFPRGLLNILEDGKREVVWLGLTQAFFEAAMFTWVFMWTPSLDTGEIPSLNLGLVFATLMLGVMCGSSVFRILTGDGGEGKGWKGGGGWSPETVLRGSLALGGVVLGIASWP-RLSAKWLLVLFTIFEASVGVYFAAMGTIRARIIPEEVRATVMNLIRLVLNLLVVSMYIGPVRLALPIEEKRPLVLGLCSAMIFIASVCHAQLL------VGREMHGEEQKTADEKISHVERTDSHKAQ 587
The following BLAST results are available for this feature:
BLAST of NO02G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30562.13.400e-14252.28putative transporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00960NO02G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00960.1NO02G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00960.1.cds1NO02G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00960.1.cds2NO02G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00960.1.cds3NO02G00960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00960.1.cds4NO02G00960.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00960.1 ID=NO02G00960.1|Name=NO02G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp
ATGCCCGTCGGCGGGTTGACGACAAGCCTGCATTGGATCGTTGTCGTTGC
CCTTGGCTTGCCTTTTGTCGTCGCGTTCGTGGCGGCCTCTTTTCCACCAC
TCTCCTCGTGTCTTCATCCTGCCGGCCTCCTCGCCTTTCAGGCCCGTCCG
TCACGTTTTCAAGCAGCCCGCTCTTCCCGCCACAACTACCAACAAAACAT
CAGCCTCTTTCCAACGACCAAAAAAGGGACGCTGTTGAGTAAAAAGGTGT
TCCCGTCCTCCCCCTCATCCCCCTACACCTTCATGGCCGCCACCCCACAA
GACACCTCCGACAGTCCTACTCCTCGTCCTCTCACCTTCACCACCCTCCT
GCCCGCTGGCGCGGCTCTCCTCGCCCTGGCCATGACCATCAGTCATTTTA
CAACTGAAGGACTTGTGGAGCGAACATTCGTCAGCGCGCTTGTGATTTGC
TCTGCTTTGGCCGCAGTCGCATACAGGGATACCCTCCCTTTCTTACGTTT
GCGGGGAGGGAGGGAGGGCTATAATACGCTTGGAGGAAAAGGAAAAGCAG
CACCTGCCACCCATGTACTGTCTGCAGTACAGCAAAAAGACTTTGCTTCT
TTCCAGATTAGGTTCCTGGTGATTCAATTAATGGCGACATTCATTGACTT
CATCCAAGGACCGTATTTATATAAAGTTTATGAGAATTACGGCTTTGGCA
TGAAAGACATCGCCACACTTTACCTTCTAGGATTTGCATCCTCTGCCGTC
TCCAGTCCCTTTGCCGGCGTATTCGCAGACACGTACGGCCGTCGGTTAGG
CTGCGTGGCATTTGCCTTGCTGCAAGCTTCCTCCTCACTCCTCCTTCACC
ACCCTTCCTTCCCCCTTCTCACCCTCGGTCGTGTCCTGTCGGGTATCGCC
ACCTCCTTCCTTGCCACGTGCTTCGAGGCCTGGATGATCTCCGAGCACAA
TCGTCTGGCGTTCCCCCCCTCTCTCGTGAAAAATACGTTTTCCATGTATG
TCTTTCTGATGGGGGTGGTGGCTGTATGGAGTGGGGCGGTGGCGGGGGTT
GTCGAAAAGGAGGGAGGGGTGCTGGCACCATTTGATGTGTGTGCATTGGT
GGCCGGGGGGTTGGCAGTATTGTTGCCGCTTGTGTGGCAGGAGGAGAATT
ATGGCATGGGAAGAGACGGGGAACCTGGAAAGAAAAGGGAGAAAGAAGAG
GGGAAGGAGTGCCACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCAACAACAACAATAACAACAATAACGACAGCAGAAGCAGCGGGAGCG
GTAGCACATTTTTGTCTTCAGTATCCTTCTCTCTCCGTCCATCCTTGCCT
TCCCTCCTCCGCTCTATTATTTTACCCACGAACAAAAACATTTTGTGGGT
AGGTCTCACACAAGCCTTCTTCGAGGCAGCCATGTTCACCTGGGTGTTTC
TATGGACCCCTTCGCTCGACACGGGGGAAATAACCTCCTTGAATTTAGGG
TTGGTTTTTGCGACGCTCATGGTTGTTTTGCTTGGGGCGTTGGTTGGGGG
TGGTGTGGCGATGATGGCGGCTGCATGGCCGGGGGAGGTTGGGGTAGCAT
GGCTGTTGATTGATTTTGTAGTGTTCGAGGCGTCGGTGGGCGTCTTTTAC
GCGGCGATGGGAAGTATCCGCGCCAGGGTGATCCCGGAGACAGCAAGGGC
GACGGTCATGAATGGCATTCGGGTCTTGTTGAACGTGTTGATCGTTTTCA
TGTATTTGGGACCGGTACGATTAGATGTGCCGATGGGAGAAAAGAGGCCG
TTAGTGCTGGGGTTGTGTAGTGCGATGGTATTTGTGGCGAGTGCATGCCA
TGCGCAGTGGATGAGGGGCGAAGGGACGGGGACGGGAAAGAGGTTGGAGA
GAGGAAGTAAGAAGCAGGAGGAGGAAAGTTTGTTGGAGATTGTTTCCGAA
AAGGCGCAATAA
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protein sequence of NO02G00960.1

>NO02G00960.1-protein ID=NO02G00960.1-protein|Name=NO02G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=654bp
MPVGGLTTSLHWIVVVALGLPFVVAFVAASFPPLSSCLHPAGLLAFQARP
SRFQAARSSRHNYQQNISLFPTTKKGTLLSKKVFPSSPSSPYTFMAATPQ
DTSDSPTPRPLTFTTLLPAGAALLALAMTISHFTTEGLVERTFVSALVIC
SALAAVAYRDTLPFLRLRGGREGYNTLGGKGKAAPATHVLSAVQQKDFAS
FQIRFLVIQLMATFIDFIQGPYLYKVYENYGFGMKDIATLYLLGFASSAV
SSPFAGVFADTYGRRLGCVAFALLQASSSLLLHHPSFPLLTLGRVLSGIA
TSFLATCFEAWMISEHNRLAFPPSLVKNTFSMYVFLMGVVAVWSGAVAGV
VEKEGGVLAPFDVCALVAGGLAVLLPLVWQEENYGMGRDGEPGKKREKEE
GKECHGSSSSSSSSSSSGNNNNNNNNDSRSSGSGSTFLSSVSFSLRPSLP
SLLRSIILPTNKNILWVGLTQAFFEAAMFTWVFLWTPSLDTGEITSLNLG
LVFATLMVVLLGALVGGGVAMMAAAWPGEVGVAWLLIDFVVFEASVGVFY
AAMGSIRARVIPETARATVMNGIRVLLNVLIVFMYLGPVRLDVPMGEKRP
LVLGLCSAMVFVASACHAQWMRGEGTGTGKRLERGSKKQEEESLLEIVSE
KAQ*
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mRNA from alignment at chr2:302090..304570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00960.1 ID=NO02G00960.1|Name=NO02G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp|location=Sequence derived from alignment at chr2:302090..304570- (Nannochloropsis oceanica)
ATGCCCGTCGGCGGGTTGACGACAAGCCTGCATTGGATCGTTGTCGTTGC
CCTTGGCTTGCCTTTTGTCGTCGCGTTCGTGGCGGCCTCTTTTCCACCAC
TCTCCTCGTGTCTTCATCCTGCCGGCCTCCTCGCCTTTCAGGCCCGTCCG
TCACGTTTTCAAGCAGGTACGTGGACATGGCGCTAAGCTCAAACATTTTG
CTGCATGGCGCTGGTGCTAGAATAGTCTTAGTGGGCATCTTGAGCTGATT
TTGTGTTGTCCCAACCTCTTACTGACCTCCCCACCTCCCTTCTCCCCCAT
CTTGAGCTGATTTTGTGTTGTCCCAACCTCTTACTGACCTCCCCACCTCC
CTTCTCCCCCAGCCCGCTCTTCCCGCCACAACTACCAACAAAACATCAGC
CTCTTTCCAACGACCAAAAAAGGGACGCTGTTGAGTAAAAAGGTGTTCCC
GTCCTCCCCCTCATCCCCCTACACCTTCATGGCCGCCACCCCACAAGACA
CCTCCGACAGTCCTACTCCTCGTCCTCTCACCTTCACCACCCTCCTGCCC
GCTGGCGCGGCTCTCCTCGCCCTGGCCATGACCATCAGTCATTTTACAAC
TGAAGGACTTGTGGAGCGAACATTCGTCAGCGCGCTTGTGATTTGCTCTG
CTTTGGCCGCAGTCGCATACAGGGATACCCTCCCTTTCTTACGTTTGCGG
GGAGGGAGGGAGGGCTATAATACGCTTGGAGGAAAAGGAAAAGCAGCACC
TGCCACCCATGTACTGTCTGCAGTACAGCAAAAAGACTTTGCTTCTTTCC
AGATTAGGTTCCTGGTGATTCAATTAATGGCGACATTCATTGACTTCATC
CAAGGACCGTATTTATATAAAGTTTATGAGAATTACGGCTTTGGCATGGT
AAGGAGGGAAGAAGGGGAAGTGGGAGAGGGAGGAAGAAGAGAAAAGATTC
AGGTTTTAATAACATCTGGTTGATTACATTGGTCTTTGTCGGCCTCAAAT
GGTGCACAAACGGAAGGGAAGGGATCGAAACAACAGAACACATCGCATTG
CGGATAGACGCACAATCCTCATGTACAGGCTTTGACGAGCTCTGAGACTC
GCCCTTCTCCCCTTTCTTTTTCCCTTTCCTCTTCCTACCAGAAAGACATC
GCCACACTTTACCTTCTAGGATTTGCATCCTCTGCCGTCTCCAGTCCCTT
TGCCGGCGTATTCGCAGACACGTACGGCCGTCGGTTAGGCTGCGTGGCAT
TTGCCTTGCTGCAAGCTTCCTCCTCACTCCTCCTTCACCACCCTTCCTTC
CCCCTTCTCACCCTCGGTCGTGTCCTGTCGGGTATCGCCACCTCCTTCCT
TGCCACGTGCTTCGAGGCCTGGATGATCTCCGAGCACAATCGTCTGGCGT
TCCCCCCCTCTCTCGTGAAAAATACGTTTTCCATGTATGTCTTTCTGATG
GGGGTGGTGGCTGTATGGAGTGGGGCGGTGGCGGGGGTTGTCGAAAAGGA
GGGAGGGGTGCTGGCACCATTTGATGTGTGTGCATTGGTGGCCGGGGGGT
TGGCAGTATTGTTGCCGCTTGTGTGGCAGGAGGAGAATTATGGCATGGGA
AGAGACGGGGAACCTGGAAAGAAAAGGGAGAAAGAAGAGGGGAAGGAGTG
CCACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAACAACA
ACAATAACAACAATAACGACAGCAGAAGCAGCGGGAGCGGTAGCACATTT
TTGTCTTCAGTATCCTTCTCTCTCCGTCCATCCTTGCCTTCCCTCCTCCG
CTCTATTATTTTACCCACGAACAAAAACATTTTGTGGGTAGGTCTCACAC
AAGCCTTCTTCGAGGCAGCCATGTTCACCTGGGTGTTTCTATGGACCCCT
TCGCTCGACACGGGGGAAATAACCTCCTTGAATTTAGGGTTGGTTTTTGC
GACGCTCATGGTGGGAGTTATGTGTGGTTCATCTGTCTTTCGGATTCTGA
CCATGGAGAGGGGTGGGGGGGGGAAGGATATAGTGTTGAGGTTGTTTTGC
TTGGGGCGTTGGTTGGGGGTGGTGTGGCGATGATGGCGGCTGCATGGCCG
GGGGAGGTTGGGGTAGCATGGCTGTTGATTGATTTTGTAGTGTTCGAGGC
GTCGGTGGGCGTCTTTTACGCGGCGATGGGAAGTATCCGCGCCAGGGTGA
TCCCGGAGACAGCAAGGGCGACGGTCATGAATGGCATTCGGGTCTTGTTG
AACGTGTTGATCGTTTTCATGTATTTGGGACCGGTACGATTAGATGTGCC
GATGGGAGAAAAGAGGCCGTTAGTGCTGGGGTTGTGTAGTGCGATGGTAT
TTGTGGCGAGTGCATGCCATGCGCAGTGGATGAGGGGCGAAGGGACGGGG
ACGGGAAAGAGGTTGGAGAGAGGAAGTAAGAAGCAGGAGGAGGAAAGTTT
GTTGGAGATTGTTTCCGAAAAGGCGCAATAA
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Coding sequence (CDS) from alignment at chr2:302090..304570-

>NO02G00960.1 ID=NO02G00960.1|Name=NO02G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1962bp|location=Sequence derived from alignment at chr2:302090..304570- (Nannochloropsis oceanica)
ATGCCCGTCGGCGGGTTGACGACAAGCCTGCATTGGATCGTTGTCGTTGC
CCTTGGCTTGCCTTTTGTCGTCGCGTTCGTGGCGGCCTCTTTTCCACCAC
TCTCCTCGTGTCTTCATCCTGCCGGCCTCCTCGCCTTTCAGGCCCGTCCG
TCACGTTTTCAAGCAGCCCGCTCTTCCCGCCACAACTACCAACAAAACAT
CAGCCTCTTTCCAACGACCAAAAAAGGGACGCTGTTGAGTAAAAAGGTGT
TCCCGTCCTCCCCCTCATCCCCCTACACCTTCATGGCCGCCACCCCACAA
GACACCTCCGACAGTCCTACTCCTCGTCCTCTCACCTTCACCACCCTCCT
GCCCGCTGGCGCGGCTCTCCTCGCCCTGGCCATGACCATCAGTCATTTTA
CAACTGAAGGACTTGTGGAGCGAACATTCGTCAGCGCGCTTGTGATTTGC
TCTGCTTTGGCCGCAGTCGCATACAGGGATACCCTCCCTTTCTTACGTTT
GCGGGGAGGGAGGGAGGGCTATAATACGCTTGGAGGAAAAGGAAAAGCAG
CACCTGCCACCCATGTACTGTCTGCAGTACAGCAAAAAGACTTTGCTTCT
TTCCAGATTAGGTTCCTGGTGATTCAATTAATGGCGACATTCATTGACTT
CATCCAAGGACCGTATTTATATAAAGTTTATGAGAATTACGGCTTTGGCA
TGAAAGACATCGCCACACTTTACCTTCTAGGATTTGCATCCTCTGCCGTC
TCCAGTCCCTTTGCCGGCGTATTCGCAGACACGTACGGCCGTCGGTTAGG
CTGCGTGGCATTTGCCTTGCTGCAAGCTTCCTCCTCACTCCTCCTTCACC
ACCCTTCCTTCCCCCTTCTCACCCTCGGTCGTGTCCTGTCGGGTATCGCC
ACCTCCTTCCTTGCCACGTGCTTCGAGGCCTGGATGATCTCCGAGCACAA
TCGTCTGGCGTTCCCCCCCTCTCTCGTGAAAAATACGTTTTCCATGTATG
TCTTTCTGATGGGGGTGGTGGCTGTATGGAGTGGGGCGGTGGCGGGGGTT
GTCGAAAAGGAGGGAGGGGTGCTGGCACCATTTGATGTGTGTGCATTGGT
GGCCGGGGGGTTGGCAGTATTGTTGCCGCTTGTGTGGCAGGAGGAGAATT
ATGGCATGGGAAGAGACGGGGAACCTGGAAAGAAAAGGGAGAAAGAAGAG
GGGAAGGAGTGCCACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCAACAACAACAATAACAACAATAACGACAGCAGAAGCAGCGGGAGCG
GTAGCACATTTTTGTCTTCAGTATCCTTCTCTCTCCGTCCATCCTTGCCT
TCCCTCCTCCGCTCTATTATTTTACCCACGAACAAAAACATTTTGTGGGT
AGGTCTCACACAAGCCTTCTTCGAGGCAGCCATGTTCACCTGGGTGTTTC
TATGGACCCCTTCGCTCGACACGGGGGAAATAACCTCCTTGAATTTAGGG
TTGGTTTTTGCGACGCTCATGGTTGTTTTGCTTGGGGCGTTGGTTGGGGG
TGGTGTGGCGATGATGGCGGCTGCATGGCCGGGGGAGGTTGGGGTAGCAT
GGCTGTTGATTGATTTTGTAGTGTTCGAGGCGTCGGTGGGCGTCTTTTAC
GCGGCGATGGGAAGTATCCGCGCCAGGGTGATCCCGGAGACAGCAAGGGC
GACGGTCATGAATGGCATTCGGGTCTTGTTGAACGTGTTGATCGTTTTCA
TGTATTTGGGACCGGTACGATTAGATGTGCCGATGGGAGAAAAGAGGCCG
TTAGTGCTGGGGTTGTGTAGTGCGATGGTATTTGTGGCGAGTGCATGCCA
TGCGCAGTGGATGAGGGGCGAAGGGACGGGGACGGGAAAGAGGTTGGAGA
GAGGAAGTAAGAAGCAGGAGGAGGAAAGTTTGTTGGAGATTGTTTCCGAA
AAGGCGCAATAA
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Synonyms
Publications