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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:266308..269143 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00820.1 vs.
Match: EWM30592.1 (hypothetical protein Naga_100033g22 [Nannochloropsis gaditana]) HSP 1 Score: 455.3 bits (1170), Expect = 1.800e-124 Identity = 236/345 (68.41%), Postives = 272/345 (78.84%), Query Frame = 0
Query: 28 QIKYLPVLLVLITLLAFASAFLPQSPS----RRLPLPLARRPSR---SPHATN-GGVNDGPTYFEWLGRQVELKLRPKPYQGLRLKIDKELAVLLMRSSYEIADELDFVAMNDFQKDFFTFRQAEWEDYVNTFPPLSVRQGELTQPSYFDFISFAQYCTLNEEMRHGKMVFVELISAEGEKQVVRRADDPSLPQDNALLPAEHARRVGQRILDKFLEAPEVYAPTVRGREKGKEGRAGDEEVLENVKRIMDLFTAKQYNQGGEVRVLEGGKEGRRG-----IMKLQISSRAPANLWSLQSLLFRKEPLLNDFEGKAVAAYLRASGREGGSYGVEVQGTDVIYTIS 360
Q YL L + +T A ASAF+ Q S R LP+ P H T GPTYFEWLGRQ ELKLRP+PYQGLRLKI+++LAVLLMRSSYE+ADELDFV MNDFQKDFFTFRQAEWEDYV FPPLSVRQGELTQPSYFDFISFAQYCTLNEEMRHGK+ FVEL+SAEGEK+VVRR+DDPSLPQDN+LLPAEH+RRVG RIL + LEAPEVYAP + GR G G G EEV+E+VKRI+DLFTAKQ+NQGGEV++L + R+G MKL+++SRAPANLWSLQSL+FR EPLLNDFEGKAV AYL+ G++ G+Y V+VQG DV++T S
Sbjct: 60 QYTYLAGLFLWLTSPALASAFVSQFSSCSSIREAALPMIHSPFSIRGDYHCTALNAERSGPTYFEWLGRQAELKLRPQPYQGLRLKIERDLAVLLMRSSYEVADELDFVPMNDFQKDFFTFRQAEWEDYVGAFPPLSVRQGELTQPSYFDFISFAQYCTLNEEMRHGKLAFVELVSAEGEKRVVRRSDDPSLPQDNSLLPAEHSRRVGDRILQRLLEAPEVYAPRLSGRGGGGGGDVGVEEVVEDVKRIVDLFTAKQFNQGGEVKMLAEKEGARKGGAAWQGMKLKVTSRAPANLWSLQSLMFRNEPLLNDFEGKAVRAYLQGVGKKEGTYAVQVQGNDVVHTFS 404
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00820.1 ID=NO02G00820.1|Name=NO02G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp
CCTCCCTCCCTCGCCTGCGTCCCTTCCTTTCTATCAACAAACCCAAGACG
CATCCCGACAAATTAATAACTCCTCCGCACAATCACAATGGACGACGCTT
TCCCTGCCCCTCCTCCGGCCCCTCCCCCCAATCGGGACAAGTAAAAGCTC
CACCACAACGCCACCACATTCCCAAACAAGACCCGATACGCCGGGGGGGT
GTAGGTAAAATTGATGGCTTGGGCCACCGTCCAGACCTTCAAATTCGTCT
TTAACGTAGGTACGTAAATATGTTTCATCCCTTGCCAAGCCGGTCCGAAG
CGACCCGTCTCGAGAGCACGAAGGAGGAAAAGAGTGAGGGCGAGGAAGGG
CGGCGTGAAGAGCAGCTTGTCTAAGAGGACCTTGATTGCCACATTCTTAG
CGCCGTGGAAGGTCTTTACATGGCGTTCGAGGAATCCATACCAATAGTGG
CAAACGGGGCCGGTGATCAGGCCTCCGAATAGAAGGAACCCAAGCGTTCG
TTTGCCGTTGCGCCCTCTCCCCGCACGACCTGACGAGGCCAAGACGTCGC
CCAAGGCGGAGATGAGTGCACTGGTCACGGCTTTCGTGGCGAGGGGCCGG
CTGACGAGACTGTTATGGTAGGCGCCAATGAGGCGTTTAAGCTCGCCCTG
CGTATGAGAAATGGAGGGAGTAAGAGATAGGACCAGGGGACGGGATGCGT
CGTGAGAGTGCGCGGGAGTATGTGGGGGGGAAGGGCGAAGGGAATGATGG
AAAAAGGGAGGAGACAAATGGAAATCAAGCCAGGCAGTTTAGGAGCCAAA
ACACGCCTCAATGTGGTGCATCTGGCGACGCGTAACTTTGAAAGTGGTGT
ACGCAAATTATGAGCGCATTTCGAGGTGCGATAGCTGGCAACATTCGAGT
CTGGGCCAAGGTCCAAGAGGAGATTCTCAACGTATCTACCCTACCCATTA
CACATGCATACGCGTACCTTTAGCGTCTTCGTGTGGGGGCTCGGGCTGGC
AGCAGGCAGGGCCAAGTGACTGCTGCTGGTGCCGGTGGTCGTTGACTCTG
TGGTGTCGTCTGTGATGATCGCCGGTGGCGGGACGTCGTCGACAACGCTG
GTCATGCTTTTGTGCGCTGAAAAAACTACCACACCGAGTTCTGTGTTTGC
CGAGAGTGGTGGGGAGGGTGAATGTGGGTGGTCAAGTGGCTGACATTTCA
AATATAGGAAGTGCAAGCGAGGGTATGCGAGTCATCAGCATACCCAAGTC
GTCATCGTCATCTGCATCAAGTGACGAGGTATGAGCTTGCTTGCCTGTCT
ACGCATGCCCATTTACCAAAGCAACGCTCTCTTTCTTCCCTCACAGGTAT
TCGGTATTATCTTAGTCGTCAGGCCAGCCTCAGGATCTTTCCGCTCGCAG
CTACGAGACTGAGGGGTAGGGCAGGTACGCGGGTTTGGACCGAAGAGCAA
ATGGACAGCTACCACCACCGACATCACTGTCCCTCCACGACAAGCAGCCG
AAGGCCGTCAAGGAGAAGACAGAAAACATGTCAGATAAAGTATCTGCCCG
TGCTTCTTGTCCTTATAACGCTTCTCGCCTTCGCATCTGCCTTCCTCCCG
CAATCCCCTTCCCGGCGGCTTCCTCTACCCCTCGCCCGCCGTCCTTCCCG
CAGCCCACACGCCACAAATGGCGGAGTAAACGACGGCCCAACATATTTCG
AATGGCTAGGTCGACAAGTCGAGCTCAAGCTTCGTCCAAAGCCGTACCAA
GGCCTGCGCTTGAAAATCGACAAGGAATTAGCAGTGTTGCTGATGCGGTC
CTCCTATGAGATTGCAGATGAGTTGGACTTTGTGGCAATGAATGACTTTC
AGAAGGATTTTTTCACATTTCGACAGGCCGAATGGGAAGACTACGTCAAC
ACCTTTCCCCCCCTCTCCGTCCGGCAAGGCGAGCTTACCCAACCCTCCTA
CTTCGACTTTATTTCCTTTGCACAATACTGCACATTAAATGAAGAAATGC
GCCATGGCAAGATGGTGTTTGTCGAGCTGATCTCTGCAGAGGGAGAAAAG
CAGGTCGTCCGTCGGGCGGACGACCCCTCCTTGCCTCAGGACAACGCCCT
GTTACCCGCGGAGCATGCACGGAGGGTTGGACAAAGGATACTTGACAAGT
TTCTGGAGGCGCCTGAGGTGTATGCACCAACGGTCAGGGGCAGGGAGAAA
GGGAAGGAGGGCCGGGCGGGGGATGAGGAGGTGTTGGAGAACGTGAAGAG
AATCATGGATTTGTTCACGGCCAAACAGTACAATCAGGGAGGGGAGGTGA
GGGTGCTAGAGGGAGGGAAGGAGGGAAGAAGGGGGATAATGAAATTGCAG
ATTTCGAGTCGGGCGCCGGCGAATTTGTGGAGCTTACAGAGTCTCTTGTT
TCGAAAAGAGCCTTTATTAAACGACTTCGAAGGGAAGGCCGTGGCGGCTT
ACCTGAGGGCGAGCGGGAGGGAGGGAGGAAGTTACGGTGTGGAGGTGCAG
GGGACAGACGTAATTTATACGATCAGTATTTAGAAGTAGGAGATGTGTAT
TGAGAAAATTGAAACAGAAATAAGGATTTATGAGTGCTATAACAAAACCA
C back to topprotein sequence of NO02G00820.1 >NO02G00820.1-protein ID=NO02G00820.1-protein|Name=NO02G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MDSYHHRHHCPSTTSSRRPSRRRQKTCQIKYLPVLLVLITLLAFASAFLP
QSPSRRLPLPLARRPSRSPHATNGGVNDGPTYFEWLGRQVELKLRPKPYQ
GLRLKIDKELAVLLMRSSYEIADELDFVAMNDFQKDFFTFRQAEWEDYVN
TFPPLSVRQGELTQPSYFDFISFAQYCTLNEEMRHGKMVFVELISAEGEK
QVVRRADDPSLPQDNALLPAEHARRVGQRILDKFLEAPEVYAPTVRGREK
GKEGRAGDEEVLENVKRIMDLFTAKQYNQGGEVRVLEGGKEGRRGIMKLQ
ISSRAPANLWSLQSLLFRKEPLLNDFEGKAVAAYLRASGREGGSYGVEVQ
GTDVIYTISI* back to topmRNA from alignment at chr2:266308..269143+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00820.1 ID=NO02G00820.1|Name=NO02G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2836bp|location=Sequence derived from alignment at chr2:266308..269143+ (Nannochloropsis oceanica)
CCTCCCTCCCTCGCCTGCGTCCCTTCCTTTCTATCAACAAACCCAAGACG
CATCCCGACAAATTAATAACTCCTCCGCACAATCACAATGGACGACGCTT
TCCCTGCCCCTCCTCCGGCCCCTCCCCCCAATCGGGACAAGTAAAAGCTC
CACCACAACGCCACCACATTCCCAAACAAGACCCGATACGCCGGGGGGGT
GTAGGTAAAATTGATGGCTTGGGCCACCGTCCAGACCTTCAAATTCGTCT
TTAACGTAGGTACGTAAATATGTTTCATCCCTTGCCAAGCCGGTCCGAAG
CGACCCGTCTCGAGAGCACGAAGGAGGAAAAGAGTGAGGGCGAGGAAGGG
CGGCGTGAAGAGCAGCTTGTCTAAGAGGACCTTGATTGCCACATTCTTAG
CGCCGTGGAAGGTCTTTACATGGCGTTCGAGGAATCCATACCAATAGTGG
CAAACGGGGCCGGTGATCAGGCCTCCGAATAGAAGGAACCCAAGCGTTCG
TTTGCCGTTGCGCCCTCTCCCCGCACGACCTGACGAGGCCAAGACGTCGC
CCAAGGCGGAGATGAGTGCACTGGTCACGGCTTTCGTGGCGAGGGGCCGG
CTGACGAGACTGTTATGGTAGGCGCCAATGAGGCGTTTAAGCTCGCCCTG
CGTATGAGAAATGGAGGGAGTAAGAGATAGGACCAGGGGACGGGATGCGT
CGTGAGAGTGCGCGGGAGTATGTGGGGGGGAAGGGCGAAGGGAATGATGG
AAAAAGGGAGGAGACAAATGGAAATCAAGCCAGGCAGTTTAGGAGCCAAA
ACACGCCTCAATGTGGTGCATCTGGCGACGCGTAACTTTGAAAGTGGTGT
ACGCAAATTATGAGCGCATTTCGAGGTGCGATAGCTGGCAACATTCGAGT
CTGGGCCAAGGTCCAAGAGGAGATTCTCAACGTATCTACCCTACCCATTA
CACATGCATACGCGTACCTTTAGCGTCTTCGTGTGGGGGCTCGGGCTGGC
AGCAGGCAGGGCCAAGTGACTGCTGCTGGTGCCGGTGGTCGTTGACTCTG
TGGTGTCGTCTGTGATGATCGCCGGTGGCGGGACGTCGTCGACAACGCTG
GTCATGCTTTTGTGCGCTGAAAAAACTACCACACCGAGTTCTGTGTTTGC
CGAGAGTGGTGGGGAGGGTGAATGTGGGTGGTCAAGTGGCTGACATTTCA
AATATAGGAAGTGCAAGCGAGGGTATGCGAGTCATCAGCATACCCAAGTC
GTCATCGTCATCTGCATCAAGTGACGAGGTATGAGCTTGCTTGCCTGTCT
ACGCATGCCCATTTACCAAAGCAACGCTCTCTTTCTTCCCTCACAGGTAT
TCGGTATTATCTTAGTCGTCAGGCCAGCCTCAGGATCTTTCCGCTCGCAG
CTACGAGACTGAGGGGTAGGGCAGGTACGCGGGTTTGGACCGAAGAGCAA
ATGGACAGCTACCACCACCGACATCACTGTCCCTCCACGACAAGCAGCCG
AAGGCCGTCAAGGAGAAGACAGAAAACATGTCAGATAAAGTATCTGCCCG
TGCTTCTTGTCCTTATAACGCTTCTCGCCTTCGCATCTGCCTTCCTCCCG
CAATCCCCTTCCCGGCGGCTTCCTCTACCCCTCGCCCGCCGTCCTTCCCG
CAGCCCACACGCCACAAATGGCGGAGTAAACGACGGCCCAACATATTTCG
AATGGCTAGGTCGACAAGTCGAGCTCAAGCTTCGTCCAAAGCCGTACCAA
GGCCTGCGCTTGAAAATCGACAAGGAATTAGCAGTGTTGCTGATGCGGTC
CTCCTATGAGATTGCAGATGAGTTGGACTTTGTGGCAATGAATGACTTTC
AGAAGGATTTTTTCACATTTCGACAGGTAAGAGATGGACAGGGGGAAGGA
GGAAAGGACGAGAAGAATGAAAGGGACAGGAGGACGAATAGTTGCGGCTG
TGAAGTGTCGGCGCAATCTATACGCTGTTCCTTATTTATTCCCTGCCCTG
ACAAATCCCTTGTTTAAGCTTGGTCGTATAGTTTCTGTATCTTAGCTGTT
CTCTCAAAATATCACTTCTTCCGCCCCCTTCAACCCTTTGCCCCCCCCCT
TCCTCCATTAGGCCGAATGGGAAGACTACGTCAACACCTTTCCCCCCCTC
TCCGTCCGGCAAGGCGAGCTTACCCAACCCTCCTACTTCGACTTTATTTC
CTTTGCACAATACTGCACATTAAATGAAGAAATGCGCCATGGCAAGATGG
TGTTTGTCGAGCTGATCTCTGCAGAGGGAGAAAAGCAGGTCGTCCGTCGG
GCGGACGACCCCTCCTTGCCTCAGGACAACGCCCTGTTACCCGCGGAGCA
TGCACGGAGGGTTGGACAAAGGATACTTGACAAGTTTCTGGAGGCGCCTG
AGGTGTATGCACCAACGGTCAGGGGCAGGGAGAAAGGGAAGGAGGGCCGG
GCGGGGGATGAGGAGGTGTTGGAGAACGTGAAGAGAATCATGGATTTGTT
CACGGCCAAACAGTACAATCAGGGAGGGGAGGTGAGGGTGCTAGAGGGAG
GGAAGGAGGGAAGAAGGGGGATAATGAAATTGCAGATTTCGAGTCGGGCG
CCGGCGAATTTGTGGAGCTTACAGAGTCTCTTGTTTCGAAAAGAGCCTTT
ATTAAACGACTTCGAAGGGAAGGCCGTGGCGGCTTACCTGAGGGCGAGCG
GGAGGGAGGGAGGAAGTTACGGTGTGGAGGTGCAGGGGACAGACGTAATT
TATACGATCAGTATTTAGAAGTAGGAGATGTGTATTGAGAAAATTGAAAC
AGAAATAAGGATTTATGAGTGCTATAACAAAACCAC back to topCoding sequence (CDS) from alignment at chr2:266308..269143+ >NO02G00820.1 ID=NO02G00820.1|Name=NO02G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr2:266308..269143+ (Nannochloropsis oceanica)
ATGGACAGCTACCACCACCGACATCACTGTCCCTCCACGACAAGCAGCCG
AAGGCCGTCAAGGAGAAGACAGAAAACATGTCAGATAAAGTATCTGCCCG
TGCTTCTTGTCCTTATAACGCTTCTCGCCTTCGCATCTGCCTTCCTCCCG
CAATCCCCTTCCCGGCGGCTTCCTCTACCCCTCGCCCGCCGTCCTTCCCG
CAGCCCACACGCCACAAATGGCGGAGTAAACGACGGCCCAACATATTTCG
AATGGCTAGGTCGACAAGTCGAGCTCAAGCTTCGTCCAAAGCCGTACCAA
GGCCTGCGCTTGAAAATCGACAAGGAATTAGCAGTGTTGCTGATGCGGTC
CTCCTATGAGATTGCAGATGAGTTGGACTTTGTGGCAATGAATGACTTTC
AGAAGGATTTTTTCACATTTCGACAGGCCGAATGGGAAGACTACGTCAAC
ACCTTTCCCCCCCTCTCCGTCCGGCAAGGCGAGCTTACCCAACCCTCCTA
CTTCGACTTTATTTCCTTTGCACAATACTGCACATTAAATGAAGAAATGC
GCCATGGCAAGATGGTGTTTGTCGAGCTGATCTCTGCAGAGGGAGAAAAG
CAGGTCGTCCGTCGGGCGGACGACCCCTCCTTGCCTCAGGACAACGCCCT
GTTACCCGCGGAGCATGCACGGAGGGTTGGACAAAGGATACTTGACAAGT
TTCTGGAGGCGCCTGAGGTGTATGCACCAACGGTCAGGGGCAGGGAGAAA
GGGAAGGAGGGCCGGGCGGGGGATGAGGAGGTGTTGGAGAACGTGAAGAG
AATCATGGATTTGTTCACGGCCAAACAGTACAATCAGGGAGGGGAGGTGA
GGGTGCTAGAGGGAGGGAAGGAGGGAAGAAGGGGGATAATGAAATTGCAG
ATTTCGAGTCGGGCGCCGGCGAATTTGTGGAGCTTACAGAGTCTCTTGTT
TCGAAAAGAGCCTTTATTAAACGACTTCGAAGGGAAGGCCGTGGCGGCTT
ACCTGAGGGCGAGCGGGAGGGAGGGAGGAAGTTACGGTGTGGAGGTGCAG
GGGACAGACGTAATTTATACGATCAGTATTTAG back to top
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