NO02G00580.1, NO02G00580.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00580.1
Unique Name	NO02G00580.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2651
Alignment location	chr2:196439..199655 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:196439..199655 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO02G00580.1 vs.
Match: EWM30602.1 (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana])

HSP 1 Score: 446.4 bits (1147), Expect = 1.300e-121
Identity = 214/278 (76.98%), Postives = 246/278 (88.49%), Query Frame = 0

Query:    1 MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLALAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHRSVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPHSSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHSTLLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTHRLVLKDMGEAERITEFLRRQKAVQQQLA 279
            MDFCYPL  WSF VHTAC +V+ + L PA+++  +I+ R I MTPTLC ALAYENLLLV+PN P+C+L AQR GWIMNA+IPPLFLVASFETGY VHKHRSVKYLGINFDEGKRVDT+PCSWFLRNL RLI+LAL FMGL VNFS+FFP +S+NAGMSGYLGLGR D AHYY+S+VPSLVFSLV+L+IAATI+RYG+HSTLLIPRSCGW+W+LLGS+LQTAGQFPAS+A YPSTSMAG    L+ ++ THRLVL DMGEA +ITEFLRRQKAVQQ+LA
Sbjct:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLA 278

The following BLAST results are available for this feature:

BLAST of NO02G00580.1 vs.

BLAST of NO02G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30602.1	1.300e-121	76.98	hypothetical protein Naga_100129g14 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G00580	NO02G00580	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00580.1	NO02G00580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00580.1.cds1	NO02G00580.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00580.1.cds2	NO02G00580.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:196439..199655-
coding sequence from alignment at chr2:196439..199655-

mRNA sequence

>NO02G00580.1 ID=NO02G00580.1|Name=NO02G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2651bp
CCCCGTCCTTTCTATTGTCTTCCCTGCACTTTCCGAAGTCGATACACACA
CAATTTTAACCCAAGAAACACGCATAAATGTGCACACCGATAGAGGCACT
CCTTCGAGGTTGACGTTGCTTTGGCGACAGCAGCGGCGGGAAGAGATGAG
CAAGTTCATCACATCACACCCCTCGGGCTGCGTGCCGTCTTGCTTTTTCC
CACTTTGCCGTGTGTGTGTGAAGCGCGTCAACATTACTCGCTCTTTTCCT
GATGTCGTGATGTCAGTAGGAAATTGCTTGTTCGGCCAGGACAGGAGTCG
GACGTACTATATAGTACGGAGCTCTGGAGCCTTCCCTCCTTTTACCTGGC
GGTGTACTCACCCTCCCCACCCTGAACCATTTTCAACCCTTGATACATCC
AAACGCTTGCACACAGACGCTCATCTGTCTCCATGGAGGAGACTACTGGC
CGGGACAATCCGCGGCAACACAGCTGTAGCGGTACCAGGCATCACCAGTG
ATAAAAAAAATAAGTAGAACGCACACTGCTTTCGTCCTCCTCGTCGCGCA
CATCCCACGACTTTAAAGCTGTCCTGGCCACTTCTCATTCCTAGGCCCAC
TTATCCAAAGGATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATTTATC
GTCCACACTGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCGCCAT
CCACTATGCAGCCCGGATCGAAAGCCGATTCATTCTCATGACCCCTACAC
TGTGCCTGGCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAACGAA
CCATATTGCAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGAATGCCAT
CATCCCCCCCCTCTTCCTCGTCGCCTCCTTCGAGACCGGCTATGTGGTGC
ACAAACACCGTTCCGTCAAGTACCTCGGCATCAACTTCGACGAAGGGAAG
CGCGTTGATACGTCCCCCTGCTCGTGGTTCCTCCGCAACTTGACCCGTCT
AATCTCCCTCGCCCTGCTCTTCATGGGCCTCGCTGTCAACTTCTCCCTCT
TCTTTCCCCACTCCTCCGAAAACGCCGGTATGTCCGGGTACCTTGGCCTG
GGGCGCGTCGACCATGCGCATTACTACATCTCCCTCGTTCCCTCCCTCGT
CTTCTCCCTCGTGTCCCTCATCATCGCCGCCACCATCCGAAGGTATGGAA
AGCACTCCACCCTCCTCATCCCCCGCTCCTGCGGCTGGAGTTGGATGCTC
CTCGGCTCGGTGCTGCAAACCGCAGGGCAGTTTCCCGCCTCTTCTGCCTT
TTACCCCTCCACGTCCATGGCAGGGTACACGGCATTCCTCGTCTGCGTCG
TCTGCACGCACCGGCTGGTGCTCAAGGACATGGGCGAGGCGGAGAGAATA
ACGGAATTTTTGCGGCGACAAAAGGCCGTGCAGCAGCAGCTGGCCGCCAC
CTGCGTGCTGAGGGAGGGAATGAGGGCGAGGAGGAGGAAGGACGCGGCGG
TCGAGGCGCGGGGGGAGGGAGGGGAGGAGGAGGGAGGAGCGGGGAGGGGT
GTGGTTGTAAATGGATACGGGGGAAGGAGGAGGACGTCTGGTCAATGCCA
CCACCACCACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGGAGCAGCAGCAGCAGCATAACGAACAGCATCAGGAACAGCAGGAACAG
CATATGAAGGACGCAGATGGGGTAGAAGAAGGGGAAGGAGGAGGAGGGGG
AGGAGGAGGAGGAGGAGGGCGGGGTCCGGTGTTGCGGGCGGGCATGGGAA
CCACGACGATGAAGATGGTCAGACGCTCGAGTGGAGGGAAGAGAGAGAGA
GGGGGAGGAAGGGAGGGAGGGGTTGCCATGCCTTCTTCCGTTGAGATGAC
GTCTACTGCAGTGGTGGTAACAGCTGAAGCAGATGATGGCGGGAAAGGAC
GAGAATGGAGAGAAGAAGGGGGAGAAGGAGGAAAAATAGCAGGAGGAAGA
GGAGGAGGAGGAGGAGGGCGCGGGGGAGGGGGGGGGCTGCTGCGGCGCGT
GAGTAGTTTGTTTGAAAGGCAGCTGCAAGGTCTGGACGGAGGACAGGGAG
GGAAGGATGGAGAGACGGGAGGGAGGGAGGGAGCAAATGGTCACAACCTG
ATAGTAGGAGGTGATGGAGAGACGGAGGGAGAGGTGATGGTGACGATGGA
GATGCTGGACGTGAGAATAGATTTACATGCCCTGCCACCACCTCAAGGAG
GGGACCAAATAGGGGTGTCAAGAGGGTAGAGGAAAGGAAGGAAGGGTGAC
GGGGACAGAGAGAGCAAATGAATGGAGAGTGATTCTTGATTTCTCCTACC
CGGATTAAAAAAGAGTTGAACTTGTTCAAAATACTTACAGGGAAACGGAT
AAGCGTGTCGTCATCGCCACCGCTGCACTAGGAGCAACGCCAACGACAAG
AGAGCAACGGCATATGCGGGAGAAAATCGAGCAGCTGGAGCACGCACCAA
CGACGCGCAACCGTGCGAGGAAAGAGTGATGGAAGCTGCAGCTGCAGCGA
CAAAAACAGCAGCAGCAGCAGGAACAGCAGTGAAAAAATGACAAGGACGG
GAACTTTACCTCCACAAATGACCCGAAAGCAATCAATTGACGAAACGACT
T

protein sequence of NO02G00580.1

>NO02G00580.1-protein ID=NO02G00580.1-protein|Name=NO02G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLA
LAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHR
SVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPH
SSENAGMSGYLGLGRVDHAHYYISLVPSLVFSLVSLIIAATIRRYGKHST
LLIPRSCGWSWMLLGSVLQTAGQFPASSAFYPSTSMAGYTAFLVCVVCTH
RLVLKDMGEAERITEFLRRQKAVQQQLAATCVLREGMRARRRKDAAVEAR
GEGGEEEGGAGRGVVVNGYGGRRRTSGQCHHHHHHHHQQQQQQQQQQEQQ
QQHNEQHQEQQEQHMKDADGVEEGEGGGGGGGGGGGRGPVLRAGMGTTTM
KMVRRSSGGKRERGGGREGGVAMPSSVEMTSTAVVVTAEADDGGKGREWR
EEGGEGGKIAGGRGGGGGGRGGGGGLLRRVSSLFERQLQGLDGGQGGKDG
ETGGREGANGHNLIVGGDGETEGEVMVTMEMLDVRIDLHALPPPQGGDQI
GVSRG*

mRNA from alignment at chr2:196439..199655-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G00580.1 ID=NO02G00580.1|Name=NO02G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3217bp|location=Sequence derived from alignment at chr2:196439..199655- (Nannochloropsis oceanica)
CCCCGTCCTTTCTATTGTCTTCCCTGCACTTTCCGAAGTCGATACACACA
CAATTTTAACCCAAGAAACACGCATAAATGTGCACACCGATAGAGGCACT
CCTTCGAGGTTGACGTTGCTTTGGCGACAGCAGCGGCGGGAAGAGATGAG
CAAGTTCATCACATCACACCCCTCGGGCTGCGTGCCGTCTTGCTTTTTCC
CACTTTGCCGTGTGTGTGTGAAGCGCGTCAACATTACTCGCTCTTTTCCT
GATGTCGTGATGTCAGTAGGAAATTGCTTGTTCGGCCAGGACAGGAGTCG
GACGTACTATATAGTACGGAGCTCTGGAGCCTTCCCTCCTTTTACCTGGC
GGTGTACTCACCCTCCCCACCCTGAACCATTTTCAACCCTTGATACATCC
AAACGCTTGCACACAGACGCTCATCTGTCTCCATGGAGGAGACTACTGGC
CGGGACAATCCGCGGCAACACAGCTGTAGCGGTACCAGGCATCACCAGTG
ATAAAAAAAATAAGTAGAACGCACACTGCTTTCGTCCTCCTCGTCGCGCA
CATCCCACGACTTTAAAGCTGTCCTGGCCACTTCTCATTCCTAGGTAATC
AATGCCCGGACTAGATATGACGTGGCATTTTTCTCCTGTCTCCCTCTCCT
CATCCCTCCCTCCCAAATGTCATGGTCATCTACCCCCCCCCTACTTACCT
ATCTGACATCCTCTTCCTGACAGCATGGCGGACAAGAGAATAAAGCGGGG
TTGCGACCGCCATACCCGTTATTGTCCACAGAGAACAGCTTCCCCCCCCC
CTTCTCCATTATCTTTTCTCTGGCCGCGGCTGCTGTCACCCCTCGCCCAC
GTACTCACTCCCTTTTTCCTCCCTCCCCCCCTCCTTCCTTCCCTCCCTCC
CTCCCTCTCTCACTCCCACCCACCACGGCAAGCAAGGCCCACTTATCCAA
AGGATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACAC
TGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATG
CAGCCCGGATCGAAAGCCGATTCATTCTCATGACCCCTACACTGTGCCTG
GCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTG
CAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGAATGGTAGGTGATACA
TCGTTTGGAAGGGTACCTCACCTCTGAGGGTAAATAAACCTCCCCCCCTC
TTCCCTTCCCCCCCCCAGGGCCCTGCCCTCCTTCCCCCCTTCCCCCCTTC
CATCCTTCGAGATAGTTCACGAACAAAAAACTAATCGTCTCCTCCCCCCC
CCCTTCCCCTTCCTGCTCCCCTCCCTTTCCCTCGTCCCCCCCCATACATG
CACTCCATTCAGCCATCATCCCCCCCCTCTTCCTCGTCGCCTCCTTCGAG
ACCGGCTATGTGGTGCACAAACACCGTTCCGTCAAGTACCTCGGCATCAA
CTTCGACGAAGGGAAGCGCGTTGATACGTCCCCCTGCTCGTGGTTCCTCC
GCAACTTGACCCGTCTAATCTCCCTCGCCCTGCTCTTCATGGGCCTCGCT
GTCAACTTCTCCCTCTTCTTTCCCCACTCCTCCGAAAACGCCGGTATGTC
CGGGTACCTTGGCCTGGGGCGCGTCGACCATGCGCATTACTACATCTCCC
TCGTTCCCTCCCTCGTCTTCTCCCTCGTGTCCCTCATCATCGCCGCCACC
ATCCGAAGGTATGGAAAGCACTCCACCCTCCTCATCCCCCGCTCCTGCGG
CTGGAGTTGGATGCTCCTCGGCTCGGTGCTGCAAACCGCAGGGCAGTTTC
CCGCCTCTTCTGCCTTTTACCCCTCCACGTCCATGGCAGGGTACACGGCA
TTCCTCGTCTGCGTCGTCTGCACGCACCGGCTGGTGCTCAAGGACATGGG
CGAGGCGGAGAGAATAACGGAATTTTTGCGGCGACAAAAGGCCGTGCAGC
AGCAGCTGGCCGCCACCTGCGTGCTGAGGGAGGGAATGAGGGCGAGGAGG
AGGAAGGACGCGGCGGTCGAGGCGCGGGGGGAGGGAGGGGAGGAGGAGGG
AGGAGCGGGGAGGGGTGTGGTTGTAAATGGATACGGGGGAAGGAGGAGGA
CGTCTGGTCAATGCCACCACCACCACCACCACCACCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCATAACGAACAGCATCA
GGAACAGCAGGAACAGCATATGAAGGACGCAGATGGGGTAGAAGAAGGGG
AAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGCGGGGTCCGGTGTTG
CGGGCGGGCATGGGAACCACGACGATGAAGATGGTCAGACGCTCGAGTGG
AGGGAAGAGAGAGAGAGGGGGAGGAAGGGAGGGAGGGGTTGCCATGCCTT
CTTCCGTTGAGATGACGTCTACTGCAGTGGTGGTAACAGCTGAAGCAGAT
GATGGCGGGAAAGGACGAGAATGGAGAGAAGAAGGGGGAGAAGGAGGAAA
AATAGCAGGAGGAAGAGGAGGAGGAGGAGGAGGGCGCGGGGGAGGGGGGG
GGCTGCTGCGGCGCGTGAGTAGTTTGTTTGAAAGGCAGCTGCAAGGTCTG
GACGGAGGACAGGGAGGGAAGGATGGAGAGACGGGAGGGAGGGAGGGAGC
AAATGGTCACAACCTGATAGTAGGAGGTGATGGAGAGACGGAGGGAGAGG
TGATGGTGACGATGGAGATGCTGGACGTGAGAATAGATTTACATGCCCTG
CCACCACCTCAAGGAGGGGACCAAATAGGGGTGTCAAGAGGGTAGAGGAA
AGGAAGGAAGGGTGACGGGGACAGAGAGAGCAAATGAATGGAGAGTGATT
CTTGATTTCTCCTACCCGGATTAAAAAAGAGTTGAACTTGTTCAAAATAC
TTACAGGGAAACGGATAAGCGTGTCGTCATCGCCACCGCTGCACTAGGAG
CAACGCCAACGACAAGAGAGCAACGGCATATGCGGGAGAAAATCGAGCAG
CTGGAGCACGCACCAACGACGCGCAACCGTGCGAGGAAAGAGTGATGGAA
GCTGCAGCTGCAGCGACAAAAACAGCAGCAGCAGCAGGAACAGCAGTGAA
AAAATGACAAGGACGGGAACTTTACCTCCACAAATGACCCGAAAGCAATC
AATTGACGAAACGACTT

Coding sequence (CDS) from alignment at chr2:196439..199655-

>NO02G00580.1 ID=NO02G00580.1|Name=NO02G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr2:196439..199655- (Nannochloropsis oceanica)
ATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACACTGC
CTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATGCAG
CCCGGATCGAAAGCCGATTCATTCTCATGACCCCTACACTGTGCCTGGCC
TTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTGCAG
CCTGGGCGCGCAACGCGTAGGTTGGATAATGAATGCCATCATCCCCCCCC
TCTTCCTCGTCGCCTCCTTCGAGACCGGCTATGTGGTGCACAAACACCGT
TCCGTCAAGTACCTCGGCATCAACTTCGACGAAGGGAAGCGCGTTGATAC
GTCCCCCTGCTCGTGGTTCCTCCGCAACTTGACCCGTCTAATCTCCCTCG
CCCTGCTCTTCATGGGCCTCGCTGTCAACTTCTCCCTCTTCTTTCCCCAC
TCCTCCGAAAACGCCGGTATGTCCGGGTACCTTGGCCTGGGGCGCGTCGA
CCATGCGCATTACTACATCTCCCTCGTTCCCTCCCTCGTCTTCTCCCTCG
TGTCCCTCATCATCGCCGCCACCATCCGAAGGTATGGAAAGCACTCCACC
CTCCTCATCCCCCGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCTCGGT
GCTGCAAACCGCAGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCCTCCA
CGTCCATGGCAGGGTACACGGCATTCCTCGTCTGCGTCGTCTGCACGCAC
CGGCTGGTGCTCAAGGACATGGGCGAGGCGGAGAGAATAACGGAATTTTT
GCGGCGACAAAAGGCCGTGCAGCAGCAGCTGGCCGCCACCTGCGTGCTGA
GGGAGGGAATGAGGGCGAGGAGGAGGAAGGACGCGGCGGTCGAGGCGCGG
GGGGAGGGAGGGGAGGAGGAGGGAGGAGCGGGGAGGGGTGTGGTTGTAAA
TGGATACGGGGGAAGGAGGAGGACGTCTGGTCAATGCCACCACCACCACC
ACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAG
CAGCAGCATAACGAACAGCATCAGGAACAGCAGGAACAGCATATGAAGGA
CGCAGATGGGGTAGAAGAAGGGGAAGGAGGAGGAGGGGGAGGAGGAGGAG
GAGGAGGGCGGGGTCCGGTGTTGCGGGCGGGCATGGGAACCACGACGATG
AAGATGGTCAGACGCTCGAGTGGAGGGAAGAGAGAGAGAGGGGGAGGAAG
GGAGGGAGGGGTTGCCATGCCTTCTTCCGTTGAGATGACGTCTACTGCAG
TGGTGGTAACAGCTGAAGCAGATGATGGCGGGAAAGGACGAGAATGGAGA
GAAGAAGGGGGAGAAGGAGGAAAAATAGCAGGAGGAAGAGGAGGAGGAGG
AGGAGGGCGCGGGGGAGGGGGGGGGCTGCTGCGGCGCGTGAGTAGTTTGT
TTGAAAGGCAGCTGCAAGGTCTGGACGGAGGACAGGGAGGGAAGGATGGA
GAGACGGGAGGGAGGGAGGGAGCAAATGGTCACAACCTGATAGTAGGAGG
TGATGGAGAGACGGAGGGAGAGGTGATGGTGACGATGGAGATGCTGGACG
TGAGAATAGATTTACATGCCCTGCCACCACCTCAAGGAGGGGACCAAATA
GGGGTGTCAAGAGGGTAG

Synonyms

Publications