|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:193667..196422 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00560.2 vs.
Match: EWM30610.1 (thymidylate synthase [Nannochloropsis gaditana]) HSP 1 Score: 311.2 bits (796), Expect = 3.000e-81 Identity = 168/234 (71.79%), Postives = 193/234 (82.48%), Query Frame = 0
Query: 43 TLALVPTSGTTSATR------------TSFGRSAPAMS-TKGAAFKTLAAPTEYEEVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLEE 264
++ L TT+ATR T FG P M+ TK A+FKTLA P EYEE+IKKSRFL+ A A+SFAEAQ FL+ V DLKA+HNCW WRG GEERSSDDGEPGGTAGRPILSAIESE+LVDV+VVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAET+THIPKVLVRL APL+MSGAVFQTI+R +K+ EDYTAEE++VDVKV+A+ ++ LRQQLQDAT+G+G LEE
Sbjct: 37 SIKLTAAFSTTAATRVVAHTALRTGSMTVFG---PLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEE 267
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00560.2 ID=NO02G00560.2|Name=NO02G00560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2068bp TGTAGACATGGTATCTGTGTGCTTTTCTTAGATGCATAGACGCATTCGGA GTATACTGCCTGTGCTGCGGCGCACATGAACGGCAATACAATGCGGTGCC TGTAACATCTACTACTTGTGGGGATGTAACCAATTTCCATTCCATCATCT ATTCGTTATAAATAAACATGCTTCCCTTCGCTCTTACTGTTGCTGCCGCT GCTGCCGCTGCTGCTGCTACTGCTGCTACTGCTATGGTTTATATCTCCTC TCCTCCATCTCATTTCCCTTCTCCTTCATCTCCTCTTTGATTTTTCTCTC TTGTTGTCGTTTGGCGGCCGCCCACACGCTATAGCGATGCATGACGATGC TCCCTGCAACTGCCACATTTAACGACGCGGTGCCCTGCGAAAGGAGCAGG GAGAGAAGGAGGAAGGGAAGGAGAGAGGTGAGATAAAAGCAAGAGGGAGA TTGGAGAAAAGTAAACACGTACCTGGCCATACTGGCTTATATACATGAAT CCATCGCAAACCCTTGCCTGCCTTGAAGACATGCCCGTTCCCTCATTCCC GAGCAGTAACGCCACTCCTCCTCCTCCTCCTCCTCCGCCCCCTTTGTCCC ATGGGGCCTCCTCCACATTTACCGCCGTCTCTCCAATCTCTATTCCCCAA ACTTGTATATTTTGAGCATGCAAGTAATCACGGCATTCCTCCAATGTCCC GTCAAAGCGTCGATATAGAGGCGTGGGAGGATGCGGTGGCTCTGCCTCTC CCTCCACAGCAGCAAAGGCAGTCGCGAGTCGCTTCGGGACGTGGGAGAGT TCGTCAAAGCCCGGCTGACCTACAACCAGGACCTCGGCTCCAAAGGCAGC CGCGGAGGTAAGGAGTGTACGGACATTCTGACGCTTGGAGATGTGGTGTA GAAGAAGGAAGAGGCGTGGCGATGGTGGAGACATTGACTCGGATGAGATG GGGTGGGTTTCGCCATTTACGACGACAGGCTCCATTTCCGTACCGCGTAG GCGATGGGACGATAGCAATGACTGTCGTGTGTTTATAGTAGTAGTGGTTT CAGGTTGTTTAAGACTGGTAATTGAGGGTTAGTTTTGCAACCTCCCCACT AACACAAATACGCCCCACACGCGCAAACAACACAGACGAGCCGAGTACCA TGACCATCGCCACAACTACAATAACAGTAAGATCAAAAAGCTGAAGGGGG GAGCGCTCTTTATTTCGCGGGCGCTAGCCATGCCCGGCAGCCTCCTGCCA AGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATTTTTAATTCTGCA AGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCTATCGACCCGTCT CGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACATCAGCAACGCGG ACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAAGGGTGCAGCATT TAAGACTTTGGCAGCACCCACCGAGTACGAAGAGGTCATTAAAAAGTCTC GCTTCTTGACTCACGCCGTCTCTGCTACGTCATTTGCCGAAGCCCAGGAC TTCTTGAAGCGGGTGTCTGATTTGAAGGCCACGCATAATTGTTGGGGATG GCGCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGAGCCTGGCGGGA CGGCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGGAGTTGGTGGAC GTGGTTGTGGTGGTGACAAGGTATTTTGGGGGCATTAAGCTTGGCGCTGG TGGCCTGGTGCGGGCGTATGGCGGCGTGGCGCGAACATGTTTGAGGAACG CAGAGACAGTGACTCATATTCCCAAGGTTTTGGTGCGATTGATAGCACCT TTGGCCATGTCGGGGGCAGTCTTCCAGACCATCAGTCGTGTTGAGAAGGT AGGGGAGGACTACACGGCTGAGGAGGTGATGGTGGACGTCAAGGTGGAGG CGAGTCAAGTGGAGGGACTGCGGCAGCAGCTGCAGGACGCCACCAAGGGG GCAGGAAGGTTGGAAGAAAAAGCATGAAAAGAAATGAACTTAAAGAAATG GTTTACAATCACAACGAA back to topprotein sequence of NO02G00560.2 >NO02G00560.2-protein ID=NO02G00560.2-protein|Name=NO02G00560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp MPGSLLPRRPPSTIVVLLLFLILQVMLAAARRSCASYRPVSVTLALVPTS GTTSATRTSFGRSAPAMSTKGAAFKTLAAPTEYEEVIKKSRFLTHAVSAT SFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAI ESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKV LVRLIAPLAMSGAVFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQ LQDATKGAGRLEEKA* back to topmRNA from alignment at chr2:193667..196422- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00560.2 ID=NO02G00560.2|Name=NO02G00560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2756bp|location=Sequence derived from alignment at chr2:193667..196422- (Nannochloropsis oceanica) TGTAGACATGGTATCTGTGTGCTTTTCTTAGATGCATAGACGCATTCGGA
GTATACTGCCTGTGCTGCGGCGCACATGAACGGCAATACAATGCGGTGCC
TGTAACATCTACTACTTGTGGGGATGTAACCAATTTCCATTCCATCATCT
ATTCGTTATAAATAAACATGCTTCCCTTCGCTCTTACTGTTGCTGCCGCT
GCTGCCGCTGCTGCTGCTACTGCTGCTACTGCTATGGTTTATATCTCCTC
TCCTCCATCTCATTTCCCTTCTCCTTCATCTCCTCTTTGATTTTTCTCTC
TTGTTGTCGTTTGGCGGCCGCCCACACGCTATAGCGATGCATGACGATGC
TCCCTGCAACTGCCACATTTAACGACGCGGTGCCCTGCGAAAGGAGCAGG
GAGAGAAGGAGGAAGGGAAGGAGAGAGGTGAGATAAAAGCAAGAGGGAGA
TTGGAGAAAAGTAAACACGTACCTGGCCATACTGGCTTATATACATGAAT
CCATCGCAAACCCTTGCCTGCCTTGAAGACATGCCCGTTCCCTCATTCCC
GAGCAGTAACGCCACTCCTCCTCCTCCTCCTCCTCCGCCCCCTTTGTCCC
ATGGGGCCTCCTCCACATTTACCGCCGTCTCTCCAATCTCTATTCCCCAA
ACTTGTATATTTTGAGCATGCAAGTAATCACGGCATTCCTCCAATGTCCC
GTCAAAGCGTCGATATAGAGGCGTGGGAGGATGCGGTGGCTCTGCCTCTC
CCTCCACAGCAGCAAAGGCAGTCGCGAGTCGCTTCGGGACGTGGGAGAGT
TCGTCAAAGCCCGGCTGACCTACAACCAGGACCTCGGCTCCAAAGGCAGC
CGCGGAGGTAAGGAGTGTACGGACATTCTGACGCTTGGAGATGTGGTGTA
GAAGAAGGAAGAGGCGTGGCGATGGTGGAGACATTGACTCGGATGAGATG
GGGTGGGTTTCGCCATTTACGACGACAGGCTCCATTTCCGTACCGCGTAG
GCGATGGGACGATAGCAATGACTGTCGTGTGTTTATAGTAGTAGTGGTTT
CAGGTTGTTTAAGACTGGTAATTGAGGGTTAGTTTTGCAACCTCCCCACT
AACACAAATACGCCCCACACGCGCAAACAACACAGACGAGCCGAGTACCA
TGACCATCGCCACAACTACAATAACAGTAAGATCAAAAAGCTGAAGGGGG
GAGCGCTCTTTATTTCGCGGGCGCTAGCCATGCCCGGCAGCCTCCTGCCA
AGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATTTTTAATTCTGCA
AGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCTATCGACCCGTCT
CGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACATCAGCAACGCGG
ACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAAGGGTGCAGCATT
TAAGACTTTGGCAGCACCCACCGAGTACGAAGAGGTACGTCGGCGGCAAG
AAGCGAAATGGCAAGGGATAACAGGAAGGTTTCACTCAAGAATGTCCTAC
CTCCTTTCCGCCTATTTTCTCAAGGCTTTTTCCCCCGCCCTTCCCATCAG
TCCTGCCCCTCAAGCCCTCAGCCTCTCGCCCACTGCTTCCTTGCCCCCCT
GGCATCTCTCCCCTTATCCTTCCCTCTTTTCCCAGGTCATTAAAAAGTCT
CGCTTCTTGACTCACGCCGTCTCTGCTACGTCATTTGCCGAAGCCCAGGA
CTTCTTGAAGCGGGTGTCTGATTTGAAGGCCACGCATAATTGTTGGGGAT
GGCGGTACGTGAGGAGGGAGACTTTGCGTTCTTCGGTGGGCGGGTGAGAC
AAGAGTGGAACACGAGTGTATGCTCTGCGTCCATCAAAAAGATTGTTTTC
CGAAATGATGCATGCATACACGCACGACAACAATACTTACTCCACTTGTC
CTCTCTCTCTCCTACCTCCCTTAACAAATGAACAGCGGACGAGGCGAAGA
GCGTAGTTCGGACGATGGCGAGCCTGGCGGGACGGCCGGGCGGCCCATCC
TCTCTGCCATAGAAAGCGAGGAGTTGGTGGACGTGGTTGTGGTGGTGACA
AGGTAATGTTATGAAAAGAGCGGAGGGAAGGAGGGATGGGGGGAGGGAGG
GAAGAGAAGGTCGATGTTGTTAAGGAGGGGAGGGAGGGGATGAGGTTGAT
GAGCCCTTTTTTCTGCATGCACTTCCTTCAGCTATGTACCAATATTATTG
ATTTTAAGCCCGCTTATCGTTAAATTAAAATTAAACAAGGTATTTTGGGG
GCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGCGGCGTGGCG
CGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATTCCCAAGGTTTT
GGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGTCTTCCAGGTGA
GTGTTCATAAATTTTATTTCTAAACTAATTTATACTATTTTATGCTATGT
ATTTCTATTTCATTTACTTGTTCGAACTCCATTTCATCGAAACTTCCATC
AAAACCCCACGACAGACCATCAGTCGTGTTGAGAAGGTAGGGGAGGACTA
CACGGCTGAGGAGGTGATGGTGGACGTCAAGGTGGAGGCGAGTCAAGTGG
AGGGACTGCGGCAGCAGCTGCAGGACGCCACCAAGGGGGCAGGAAGGTTG
GAAGAAAAAGCATGAAAAGAAATGAACTTAAAGAAATGGTTTACAATCAC
AACGAA back to topCoding sequence (CDS) from alignment at chr2:193667..196422- >NO02G00560.2 ID=NO02G00560.2|Name=NO02G00560.2|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr2:193667..196422- (Nannochloropsis oceanica) ATGCCCGGCAGCCTCCTGCCAAGACGCCCTCCCTCAACGATCGTCGTCCT GCTACTATTTTTAATTCTGCAAGTGATGCTTGCAGCCGCCCGCCGTAGCT GCGCTAGCTATCGACCCGTCTCGGTCACTCTTGCATTAGTTCCTACTTCT GGTACCACATCAGCAACGCGGACGTCTTTCGGAAGAAGCGCTCCCGCAAT GTCGACCAAGGGTGCAGCATTTAAGACTTTGGCAGCACCCACCGAGTACG AAGAGGTCATTAAAAAGTCTCGCTTCTTGACTCACGCCGTCTCTGCTACG TCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGTGTCTGATTTGAAGGC CACGCATAATTGTTGGGGATGGCGCGGACGAGGCGAAGAGCGTAGTTCGG ACGATGGCGAGCCTGGCGGGACGGCCGGGCGGCCCATCCTCTCTGCCATA GAAAGCGAGGAGTTGGTGGACGTGGTTGTGGTGGTGACAAGGTATTTTGG GGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGCGGCGTGG CGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATTCCCAAGGTT TTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGTCTTCCAGAC CATCAGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGA TGGTGGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAG CTGCAGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGA back to top
|