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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:86730..88404 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00240.1 vs.
Match: PRP79260.1 (hypothetical protein PROFUN_14243 [Planoprotostelium fungivorum]) HSP 1 Score: 161.0 bits (406), Expect = 5.800e-36 Identity = 80/216 (37.04%), Postives = 123/216 (56.94%), Query Frame = 0
Query: 69 EIYVIPHSHCDAGYKKTVEGYYLTEVQSVLNSVTDALTAHPDYRFVWAEASYLWRWWIDPATLPERKANFLHLVEEGRLELVGGGWVMHDEAIASYETQIHNMQSGHSLLRSLLRSLPAASQERMLPKIGWQIDPFGPSAWTPALMTMMGFNAWVTNRIPDALKEAYRGNQSLQFEWEWEEEKEEGEGGREGERGGGMLTHVMDTHYESPEGFHWD 285
+I++IPHSHCD G+ K+ +GYY V+ +LN+V D L+ F WAE S+ WW + + ER++ + +V+ ++E +GGG+V +DEA +S + I+ + GH ++ + P +I WQIDPFG S+ TP+L + MG+ A V NRI LK Y+ + ++F W K G E M THV+ THY +P+GF W+
Sbjct: 46 DIHIIPHSHCDPGWLKSFDGYYQESVKHILNNVLDTLSRDSSRTFNWAEISFFNMWWQEQSE--ERRSQWKRMVQSKQIEFIGGGYVQNDEAGSSLDIVINQVSDGHEWIQKNFGTRP---------RIAWQIDPFGHSSLTPSLFSQMGYEAMVINRIHHRLKGDYKSKKQMEFVW-----KASPSLGEE----HSMFTHVLHTHYSAPDGFDWE 241
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00240.1 ID=NO02G00240.1|Name=NO02G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=903bp ATGCCAGCGTCCCTCTCGCAGTCCTTCCTCCTCCATTTCCTTGTCCTCCT CCTTCCCACCCTCCTCCCCGCCCAGCTCCTCTCGGCCCACCCCTCCCTCC GCACCCGTCGCTTTCCCCCTACCTCCCCCTCCAACCCGCCTTCCTCCCTG CTTCCCATTCATGAAGATGCAAATGTGGAGAAGGGTGTAGAAGATTTGAT CTACGAGATCTACGTCATTCCACACAGTCACTGCGACGCAGGGTACAAGA AGACAGTGGAAGGATACTATCTAACCGAGGTTCAATCCGTCCTCAACAGC GTCACGGATGCCCTGACCGCCCACCCCGACTACCGATTCGTATGGGCCGA AGCCTCCTACCTCTGGCGGTGGTGGATCGACCCTGCCACTCTCCCCGAGC GCAAAGCAAACTTCCTGCATCTGGTGGAGGAAGGCCGGCTGGAGCTGGTG GGGGGGGGATGGGTCATGCACGACGAGGCCATAGCCAGCTACGAGACTCA GATCCACAACATGCAAAGTGGACACAGCCTCCTTCGGTCCCTCCTTCGGT CCCTCCCTGCCGCCTCTCAGGAGAGGATGCTGCCCAAAATAGGGTGGCAG ATCGATCCGTTCGGACCCTCGGCCTGGACGCCCGCCTTGATGACGATGAT GGGCTTCAACGCCTGGGTGACCAACCGTATTCCCGATGCGCTGAAGGAAG CATACCGCGGCAATCAGTCGCTGCAGTTCGAGTGGGAGTGGGAGGAGGAG AAGGAGGAGGGGGAGGGAGGGAGGGAGGGAGAGAGGGGAGGAGGGATGCT GACCCACGTGATGGACACACATTATGAGAGCCCTGAAGGCTTTCACTGGG ACGGCCCTCCCTCCTCCCCCCCTCCTCCTCCTCCCCCCCCTCACCCCCGC TAA back to topprotein sequence of NO02G00240.1 >NO02G00240.1-protein ID=NO02G00240.1-protein|Name=NO02G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp MPASLSQSFLLHFLVLLLPTLLPAQLLSAHPSLRTRRFPPTSPSNPPSSL LPIHEDANVEKGVEDLIYEIYVIPHSHCDAGYKKTVEGYYLTEVQSVLNS VTDALTAHPDYRFVWAEASYLWRWWIDPATLPERKANFLHLVEEGRLELV GGGWVMHDEAIASYETQIHNMQSGHSLLRSLLRSLPAASQERMLPKIGWQ IDPFGPSAWTPALMTMMGFNAWVTNRIPDALKEAYRGNQSLQFEWEWEEE KEEGEGGREGERGGGMLTHVMDTHYESPEGFHWDGPPSSPPPPPPPPHPR * back to topmRNA from alignment at chr2:86730..88404+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00240.1 ID=NO02G00240.1|Name=NO02G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1675bp|location=Sequence derived from alignment at chr2:86730..88404+ (Nannochloropsis oceanica) ATGCCAGCGTCCCTCTCGCAGTCCTTCCTCCTCCATTTCCTTGTCCTCCT
CCTTCCCACCCTCCTCCCCGCCCAGCTCCTCTCGGCCCACCCCTCCCTCC
GCACCCGTCGCTTTCCCCCTACCTCCCCCTCCAACCCGCCTTCCTCCCTG
CTTCCCATTCATGAAGATGCAAATGTGGAGAAGGGTGTAGAAGATTTGAT
CTACGAGATCTACGTCATTCCACACAGTCACTGCGACGCAGGGTACAAGA
AGACAGTGGAAGGATACTATCTAACCGAGGTACGCCCTCCTTTTCGCTCT
CCCTTCGTTCCTCCCTCCCTCCTCCCCTCCCCTCCATCCATATCCATATT
CACCACTGTTCTTCCTCGTCCGCCGGCCACAACACGTCTTTCTAGTGCCT
CCGAAATCAGTGCATGCCATTCATCCCACCACCCTCCTTCCCTCCTTCCC
TCCCTCCCCCTCTCCTTCCCTCCCTCCCTCCCGCCCTCCCTTCCCCAGGT
TCAATCCGTCCTCAACAGCGTCACGGATGCCCTGACCGCCCACCCCGACT
ACCGATTCGTATGGGCCGAAGCCTCCTACCTCTGGCGGTGGTGGATCGAC
CCTGCCACTCTCCCCGGTGCGTGCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCGTTCGTTGCAGCATCGCATCGGACTAACATCACCTTCCTC
CTTCCTCCCCCCGCCCCTTACCCTCCACCTGTAGAGCGCAAAGCAAACTT
CCTGCATCTGGTGGAGGAAGGCCGGCTGGAGCTGGTGGGGGGGGGATGGG
TCATGCACGACGAGGCCATAGCCAGGTAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGTAGAGGTAGATAGATAGATAGGTAGGGAAATACA
GAGAAGGTAACCATGCCGCGCTCAAGCTACTCCCCTCCCTCCCCAGCTAC
GAGACTCAGATCCACAACATGCAAAGTGGACACAGCCTCCTTCGGTCCCT
CCTTCGGTCCCTCCCTGCCGCCTCTCAGGAGAGGATGCTGCCCAAAATAG
GGTGGCAGATCGATCCGTTCGGACCCTCGGCCTGGACGCCCGCCTTGATG
ACGATGATGGGTAGGGAAGGAGGGGGGCAAGAAAGGAGGGAGGGAAGAGT
CGAGGAGCGAAAGCATGCGCTCAGTAGTCTTCATACGCTTTCCCTCGCTC
GCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTTCCTCACAGGCTTCAACG
CCTGGGTGACCAACCGTATTCCCGATGCGCTGAAGGAAGCATACCGCGGC
AATCAGTCGCTGCAGTTCGAGTGGGAGTGGGAGGAGGAGAAGGAGGAGGG
GGAGGGAGGGAGGGAGGGAGAGAGGGGAGGAGGGATGCTGACCCACGTGA
TGGACACACATTATGAGAGCCCTGAAGGTGAGGAGCGTGGAGGGGGAGAA
AATGAGGGAGGGGGAGGATGAAGGAGGGGGAGGATGAAGGAAGGGGAGGA
TGAAGGAGGGGGAGGGTGTAAAAGGAGAAGGCAAACAATGCCAGAGATTA
CCACAAAACCCCCACCTCATCTTACCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTGCAGGCTTTCACTGGGACGGCCCTCCCTCCTCCCCCCCTCCTCC
TCCTCCCCCCCCTCACCCCCGCTAA back to topCoding sequence (CDS) from alignment at chr2:86730..88404+ >NO02G00240.1 ID=NO02G00240.1|Name=NO02G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr2:86730..88404+ (Nannochloropsis oceanica) ATGCCAGCGTCCCTCTCGCAGTCCTTCCTCCTCCATTTCCTTGTCCTCCT CCTTCCCACCCTCCTCCCCGCCCAGCTCCTCTCGGCCCACCCCTCCCTCC GCACCCGTCGCTTTCCCCCTACCTCCCCCTCCAACCCGCCTTCCTCCCTG CTTCCCATTCATGAAGATGCAAATGTGGAGAAGGGTGTAGAAGATTTGAT CTACGAGATCTACGTCATTCCACACAGTCACTGCGACGCAGGGTACAAGA AGACAGTGGAAGGATACTATCTAACCGAGGTTCAATCCGTCCTCAACAGC GTCACGGATGCCCTGACCGCCCACCCCGACTACCGATTCGTATGGGCCGA AGCCTCCTACCTCTGGCGGTGGTGGATCGACCCTGCCACTCTCCCCGAGC GCAAAGCAAACTTCCTGCATCTGGTGGAGGAAGGCCGGCTGGAGCTGGTG GGGGGGGGATGGGTCATGCACGACGAGGCCATAGCCAGCTACGAGACTCA GATCCACAACATGCAAAGTGGACACAGCCTCCTTCGGTCCCTCCTTCGGT CCCTCCCTGCCGCCTCTCAGGAGAGGATGCTGCCCAAAATAGGGTGGCAG ATCGATCCGTTCGGACCCTCGGCCTGGACGCCCGCCTTGATGACGATGAT GGGCTTCAACGCCTGGGTGACCAACCGTATTCCCGATGCGCTGAAGGAAG CATACCGCGGCAATCAGTCGCTGCAGTTCGAGTGGGAGTGGGAGGAGGAG AAGGAGGAGGGGGAGGGAGGGAGGGAGGGAGAGAGGGGAGGAGGGATGCT GACCCACGTGATGGACACACATTATGAGAGCCCTGAAGGCTTTCACTGGG ACGGCCCTCCCTCCTCCCCCCCTCCTCCTCCTCCCCCCCCTCACCCCCGC TAA back to top
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