NO02G00020.1, NO02G00020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00020.1
Unique NameNO02G00020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1773
Alignment locationchr2:5724..7757 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:5724..7757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00020.1 vs.
Match: EWM30668.1 (calcium-binding endonuclease exonuclease phosphatase family protein [Nannochloropsis gaditana])

HSP 1 Score: 518.1 bits (1333), Expect = 3.600e-143
Identity = 311/593 (52.45%), Postives = 383/593 (64.59%), Query Frame = 0 
Query:    3 GRRRRAPTPAPWQRKASAAALLLCCCMGNQALGFRASHHRHRPSSSLAAFSTPPNRPSPTSNEGEDKTGSPSLAANSGVGTTVRCISSTESHSKSMRPGNMSPPPLSPGSPSLLPLLYPAA----PHSSAPTASSSLCSSTSMQQQQQRPQPEQQSLSISTFNILAPCYKRMQDGGREADFPEYMERRAIDTATFIREELDTDIICLQEFFMHDEAYTSLFHSTLADVYDFYLHPRPSKKDGLGVLLKKGKFRVHAVRGATLSRWGSRVGLLMDLEAAVDEKMGQKATGEGQRVVLLSTHLSFPHNRFDENQQHRQVLSLTRMLETYVKGQEAVNGRQRMLQVLCGDFNVDLTHPVLDPIHALGFRHVMAAGESRGVGAEDVGQPLVTHRTHRGEDVAVDHIFFRSYDSTMARRRPSVVGKGELEDGKVIRPLATASSSFSSSFLQSLWSGRRGAGGDSERGEGQEKKEEGDGKETRGAAPGIMGGVGQRRWTEFVPASSWCREKRRERAMPHSFSSFSSPISPSPSASSVVWGRERGGAAECV-DALLPSVEVVDVALYPPSLCSRKWPKEFGERISDHRPLKAALNVTRIM 591
            G +RR P  A   R  S  AL+LC CM  +A G   +  RH    SLAAF TPP  P P+        G+P    +S +  T+ C +++ +    + P   S PPL   S  + PL+        P   +P  SSSL  +++      + +  QQ +SISTFNILAPCYKRM+DGGREADFPE ME RA++TA FIR ELDTDIICLQEFF+ DE YT+LF S+LAD YDFYLHPRPSKKDGLGVLL+KGKFR+H  RGATLSRWGSRVGLLMDLE       G  +  EGQR++LLSTHLSFPHNRFDENQQHRQV SLTRMLE YVKG  A+ G++ +LQ+LCGDFNVDLT+PVL PIHALGF+HV   GE RG GA+      VTHRTHRG+DVAVDHIF+RS+++   RRR    G    ED +   P     +    S   S W+ RR A    ++ EG  +  +  G+E    +  ++GG GQR W +F+P SSW R +   R+ P  +   S+      SASSVVWG E   A   V +A +PSV V+DVAL P SL    WP+EFGE+ISDHRPL+A+LNVTR +
Sbjct:    4 GHKRRRPL-ASGSRPVSVLALILCYCMYTEAAGSLFATPRHHRPPSLAAFGTPPP-PRPSVAAPGKIPGTPP---SSSLPATLSCNAASVTSRPYVMP---SAPPLQKSS-EVTPLITSTTCLPYPSLLSPPISSSLSIASTPCPPPLQYKLTQQDISISTFNILAPCYKRMKDGGREADFPERMESRALETAAFIRRELDTDIICLQEFFVQDEGYTTLFSSSLADAYDFYLHPRPSKKDGLGVLLRKGKFRLHGARGATLSRWGSRVGLLMDLETLA----GATSEQEGQRIILLSTHLSFPHNRFDENQQHRQVSSLTRMLEAYVKGCPALGGQRDVLQILCGDFNVDLTNPVLAPIHALGFQHVREEGE-RGDGAD-----FVTHRTHRGDDVAVDHIFYRSFNAARHRRR-GATGNTSEEDPRSRGPEGATIAFPLHSSWPSFWARRRSA----DKREGPLQGGDPGGREKTEGSTHVIGGAGQRTWKDFIPTSSWSRARWNARSRP-MYGPASTKSPRRSSASSVVWGAEEAKAGAGVSEASVPSVAVMDVALCPISLDVGTWPREFGEKISDHRPLRASLNVTRFL 571
The following BLAST results are available for this feature:
BLAST of NO02G00020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30668.13.600e-14352.45calcium-binding endonuclease exonuclease phosphata... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00020NO02G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00020.1NO02G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00020.1.cds1NO02G00020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00020.1.cds2NO02G00020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00020.1.cds3NO02G00020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00020.1 ID=NO02G00020.1|Name=NO02G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp
ATGCCCGGCAGACGCCGGCGAGCCCCAACCCCTGCGCCTTGGCAACGCAA
GGCTTCTGCTGCCGCACTCCTCCTTTGTTGCTGCATGGGCAATCAAGCCT
TGGGCTTCAGGGCTTCGCATCACCGTCATCGACCCTCGTCTTCCCTCGCT
GCCTTTAGCACGCCTCCCAACCGGCCCTCTCCAACCAGCAATGAAGGGGA
AGACAAGACGGGCAGCCCCTCCTTGGCGGCCAATTCAGGTGTCGGGACAA
CGGTCAGGTGTATCAGTAGCACGGAAAGCCACAGCAAGTCAATGCGGCCT
GGTAACATGTCGCCCCCACCATTATCACCAGGATCTCCGTCCCTCTTGCC
CTTGCTCTACCCTGCCGCTCCCCACTCCTCTGCGCCTACAGCCTCCTCCT
CCCTCTGCTCATCAACATCCATGCAGCAGCAACAGCAGCGGCCACAGCCA
GAGCAGCAGAGCCTGAGCATATCTACCTTCAACATCTTGGCACCTTGCTA
CAAGCGGATGCAGGACGGCGGCCGCGAGGCGGACTTCCCCGAATACATGG
AGAGGCGCGCTATTGACACGGCCACCTTCATCAGGGAAGAGCTGGACACG
GACATCATCTGCCTACAAGAGTTTTTCATGCATGATGAGGCCTACACTTC
GCTTTTCCACTCCACCCTGGCTGATGTTTACGACTTCTACTTACATCCAC
GACCGAGCAAGAAGGACGGGCTGGGCGTGCTACTAAAAAAAGGCAAATTC
CGCGTCCACGCTGTGCGCGGTGCCACGCTTTCTCGCTGGGGCAGTCGGGT
GGGACTACTCATGGATCTGGAAGCCGCGGTCGACGAGAAAATGGGACAAA
AGGCGACGGGGGAGGGCCAGCGTGTAGTGTTGCTGAGCACGCACCTGTCC
TTCCCGCATAACCGGTTCGACGAGAACCAGCAGCACCGGCAGGTTCTGAG
CCTCACGCGCATGCTTGAAACCTACGTCAAGGGCCAGGAGGCGGTGAATG
GGCGTCAGCGCATGCTGCAGGTCCTCTGTGGCGACTTCAACGTAGACCTG
ACACACCCCGTTCTTGACCCTATCCATGCCCTCGGCTTCAGGCACGTGAT
GGCCGCTGGCGAGAGCAGGGGAGTAGGGGCCGAGGACGTTGGGCAGCCTC
TTGTCACCCACCGCACACACCGTGGGGAGGATGTAGCTGTAGACCACATC
TTCTTCAGAAGTTACGACTCGACCATGGCGCGGAGGCGGCCATCAGTGGT
GGGGAAGGGGGAGTTGGAGGATGGGAAAGTAATCAGGCCTCTGGCTACTG
CCTCGTCGTCCTTCTCGTCGTCCTTCTTGCAGAGTCTATGGTCAGGAAGA
AGGGGGGCAGGAGGTGACTCGGAGAGAGGTGAGGGACAGGAGAAGAAGGA
AGAAGGCGATGGAAAGGAAACACGAGGAGCAGCACCAGGGATAATGGGAG
GTGTAGGGCAACGGCGGTGGACAGAATTTGTGCCCGCGTCGAGCTGGTGC
CGTGAAAAGAGAAGGGAAAGGGCAATGCCGCATTCCTTCTCTTCCTTCTC
CTCTCCTATTTCCCCCAGTCCTTCGGCGTCCTCAGTGGTGTGGGGGCGAG
AAAGAGGGGGCGCCGCAGAATGTGTGGACGCACTGCTGCCGTCGGTGGAA
GTCGTCGATGTGGCGCTGTACCCGCCTTCTTTGTGCTCGAGGAAGTGGCC
GAAAGAGTTTGGCGAGAGGATTTCTGACCATCGGCCCCTTAAGGCAGCAC
TGAATGTGACGCGAATAATGTAA
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protein sequence of NO02G00020.1

>NO02G00020.1-protein ID=NO02G00020.1-protein|Name=NO02G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MPGRRRRAPTPAPWQRKASAAALLLCCCMGNQALGFRASHHRHRPSSSLA
AFSTPPNRPSPTSNEGEDKTGSPSLAANSGVGTTVRCISSTESHSKSMRP
GNMSPPPLSPGSPSLLPLLYPAAPHSSAPTASSSLCSSTSMQQQQQRPQP
EQQSLSISTFNILAPCYKRMQDGGREADFPEYMERRAIDTATFIREELDT
DIICLQEFFMHDEAYTSLFHSTLADVYDFYLHPRPSKKDGLGVLLKKGKF
RVHAVRGATLSRWGSRVGLLMDLEAAVDEKMGQKATGEGQRVVLLSTHLS
FPHNRFDENQQHRQVLSLTRMLETYVKGQEAVNGRQRMLQVLCGDFNVDL
THPVLDPIHALGFRHVMAAGESRGVGAEDVGQPLVTHRTHRGEDVAVDHI
FFRSYDSTMARRRPSVVGKGELEDGKVIRPLATASSSFSSSFLQSLWSGR
RGAGGDSERGEGQEKKEEGDGKETRGAAPGIMGGVGQRRWTEFVPASSWC
REKRRERAMPHSFSSFSSPISPSPSASSVVWGRERGGAAECVDALLPSVE
VVDVALYPPSLCSRKWPKEFGERISDHRPLKAALNVTRIM*
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mRNA from alignment at chr2:5724..7757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00020.1 ID=NO02G00020.1|Name=NO02G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp|location=Sequence derived from alignment at chr2:5724..7757- (Nannochloropsis oceanica)
ATGCCCGGCAGACGCCGGCGAGCCCCAACCCCTGCGCCTTGGCAACGCAA
GGCTTCTGCTGCCGCACTCCTCCTTTGTTGCTGCATGGGCAATCAAGCCT
TGGGCTTCAGGGCTTCGCATCACCGTCATCGACCCTCGTCTTCCCTCGCT
GCCTTTAGCACGCCTCCCAACCGGCCCTCTCCAACCAGCAATGAAGGGGA
AGACAAGACGGGCAGCCCCTCCTTGGCGGCCAATTCAGGTGTCGGGACAA
CGGTCAGGTGTATCAGTAGCACGGAAAGGTGGGTGGGGGTGCGGGGATGG
GGGGATGAGGATAGAATGGGAGAAGGATTTCGTGACGGAAAACATACACA
CATGTGCGTATATACGTGCCCAATTACTGTTTGGCAGCTTTCCCTTCTAG
TAACGTGCTTACCTCCACCCTCTCACACCAAAGCCACAGCAAGTCAATGC
GGCCTGGTAACATGTCGCCCCCACCATTATCACCAGGATCTCCGTCCCTC
TTGCCCTTGCTCTACCCTGCCGCTCCCCACTCCTCTGCGCCTACAGCCTC
CTCCTCCCTCTGCTCATCAACATCCATGCAGCAGCAACAGCAGCGGCCAC
AGCCAGAGCAGCAGAGCCTGAGCATATCTACCTTCAACATCTTGGCACCT
TGCTACAAGCGGATGCAGGACGGCGGCCGCGAGGCGGACTTCCCCGAATA
CATGGAGAGGCGCGCTATTGACACGGCCACCTTCATCAGGTGCGTAAAAA
TGATACAGCGCACATTTGTTGCCTGGGCCTTTCTCTTCACTCCTTTCCCC
CTGCATTCAAGTCCTATTTTAAATCTGTTCCTCCCCCCGTCACAGGGAAG
AGCTGGACACGGACATCATCTGCCTACAAGAGTTTTTCATGCATGATGAG
GCCTACACTTCGCTTTTCCACTCCACCCTGGCTGATGTTTACGACTTCTA
CTTACATCCACGACCGAGCAAGAAGGACGGGCTGGGCGTGCTACTAAAAA
AAGGCAAATTCCGCGTCCACGCTGTGCGCGGTGCCACGCTTTCTCGCTGG
GGCAGTCGGGTGGGACTACTCATGGATCTGGAAGCCGCGGTCGACGAGAA
AATGGGACAAAAGGCGACGGGGGAGGGCCAGCGTGTAGTGTTGCTGAGCA
CGCACCTGTCCTTCCCGCATAACCGGTTCGACGAGAACCAGCAGCACCGG
CAGGTTCTGAGCCTCACGCGCATGCTTGAAACCTACGTCAAGGGCCAGGA
GGCGGTGAATGGGCGTCAGCGCATGCTGCAGGTCCTCTGTGGCGACTTCA
ACGTAGACCTGACACACCCCGTTCTTGACCCTATCCATGCCCTCGGCTTC
AGGCACGTGATGGCCGCTGGCGAGAGCAGGGGAGTAGGGGCCGAGGACGT
TGGGCAGCCTCTTGTCACCCACCGCACACACCGTGGGGAGGATGTAGCTG
TAGACCACATCTTCTTCAGAAGTTACGACTCGACCATGGCGCGGAGGCGG
CCATCAGTGGTGGGGAAGGGGGAGTTGGAGGATGGGAAAGTAATCAGGCC
TCTGGCTACTGCCTCGTCGTCCTTCTCGTCGTCCTTCTTGCAGAGTCTAT
GGTCAGGAAGAAGGGGGGCAGGAGGTGACTCGGAGAGAGGTGAGGGACAG
GAGAAGAAGGAAGAAGGCGATGGAAAGGAAACACGAGGAGCAGCACCAGG
GATAATGGGAGGTGTAGGGCAACGGCGGTGGACAGAATTTGTGCCCGCGT
CGAGCTGGTGCCGTGAAAAGAGAAGGGAAAGGGCAATGCCGCATTCCTTC
TCTTCCTTCTCCTCTCCTATTTCCCCCAGTCCTTCGGCGTCCTCAGTGGT
GTGGGGGCGAGAAAGAGGGGGCGCCGCAGAATGTGTGGACGCACTGCTGC
CGTCGGTGGAAGTCGTCGATGTGGCGCTGTACCCGCCTTCTTTGTGCTCG
AGGAAGTGGCCGAAAGAGTTTGGCGAGAGGATTTCTGACCATCGGCCCCT
TAAGGCAGCACTGAATGTGACGCGAATAATGTAA
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Coding sequence (CDS) from alignment at chr2:5724..7757-

>NO02G00020.1 ID=NO02G00020.1|Name=NO02G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=1773bp|location=Sequence derived from alignment at chr2:5724..7757- (Nannochloropsis oceanica)
ATGCCCGGCAGACGCCGGCGAGCCCCAACCCCTGCGCCTTGGCAACGCAA
GGCTTCTGCTGCCGCACTCCTCCTTTGTTGCTGCATGGGCAATCAAGCCT
TGGGCTTCAGGGCTTCGCATCACCGTCATCGACCCTCGTCTTCCCTCGCT
GCCTTTAGCACGCCTCCCAACCGGCCCTCTCCAACCAGCAATGAAGGGGA
AGACAAGACGGGCAGCCCCTCCTTGGCGGCCAATTCAGGTGTCGGGACAA
CGGTCAGGTGTATCAGTAGCACGGAAAGCCACAGCAAGTCAATGCGGCCT
GGTAACATGTCGCCCCCACCATTATCACCAGGATCTCCGTCCCTCTTGCC
CTTGCTCTACCCTGCCGCTCCCCACTCCTCTGCGCCTACAGCCTCCTCCT
CCCTCTGCTCATCAACATCCATGCAGCAGCAACAGCAGCGGCCACAGCCA
GAGCAGCAGAGCCTGAGCATATCTACCTTCAACATCTTGGCACCTTGCTA
CAAGCGGATGCAGGACGGCGGCCGCGAGGCGGACTTCCCCGAATACATGG
AGAGGCGCGCTATTGACACGGCCACCTTCATCAGGGAAGAGCTGGACACG
GACATCATCTGCCTACAAGAGTTTTTCATGCATGATGAGGCCTACACTTC
GCTTTTCCACTCCACCCTGGCTGATGTTTACGACTTCTACTTACATCCAC
GACCGAGCAAGAAGGACGGGCTGGGCGTGCTACTAAAAAAAGGCAAATTC
CGCGTCCACGCTGTGCGCGGTGCCACGCTTTCTCGCTGGGGCAGTCGGGT
GGGACTACTCATGGATCTGGAAGCCGCGGTCGACGAGAAAATGGGACAAA
AGGCGACGGGGGAGGGCCAGCGTGTAGTGTTGCTGAGCACGCACCTGTCC
TTCCCGCATAACCGGTTCGACGAGAACCAGCAGCACCGGCAGGTTCTGAG
CCTCACGCGCATGCTTGAAACCTACGTCAAGGGCCAGGAGGCGGTGAATG
GGCGTCAGCGCATGCTGCAGGTCCTCTGTGGCGACTTCAACGTAGACCTG
ACACACCCCGTTCTTGACCCTATCCATGCCCTCGGCTTCAGGCACGTGAT
GGCCGCTGGCGAGAGCAGGGGAGTAGGGGCCGAGGACGTTGGGCAGCCTC
TTGTCACCCACCGCACACACCGTGGGGAGGATGTAGCTGTAGACCACATC
TTCTTCAGAAGTTACGACTCGACCATGGCGCGGAGGCGGCCATCAGTGGT
GGGGAAGGGGGAGTTGGAGGATGGGAAAGTAATCAGGCCTCTGGCTACTG
CCTCGTCGTCCTTCTCGTCGTCCTTCTTGCAGAGTCTATGGTCAGGAAGA
AGGGGGGCAGGAGGTGACTCGGAGAGAGGTGAGGGACAGGAGAAGAAGGA
AGAAGGCGATGGAAAGGAAACACGAGGAGCAGCACCAGGGATAATGGGAG
GTGTAGGGCAACGGCGGTGGACAGAATTTGTGCCCGCGTCGAGCTGGTGC
CGTGAAAAGAGAAGGGAAAGGGCAATGCCGCATTCCTTCTCTTCCTTCTC
CTCTCCTATTTCCCCCAGTCCTTCGGCGTCCTCAGTGGTGTGGGGGCGAG
AAAGAGGGGGCGCCGCAGAATGTGTGGACGCACTGCTGCCGTCGGTGGAA
GTCGTCGATGTGGCGCTGTACCCGCCTTCTTTGTGCTCGAGGAAGTGGCC
GAAAGAGTTTGGCGAGAGGATTTCTGACCATCGGCCCCTTAAGGCAGCAC
TGAATGTGACGCGAATAATGTAA
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Synonyms
Publications