NO02G00010.1, NO02G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00010.1
Unique NameNO02G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr2:1610..3678 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1610..3678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00010.1 vs.
Match: WP_041298197.1 (HYR domain-containing protein [Ilumatobacter coccineus])

HSP 1 Score: 123.2 bits (308), Expect = 2.600e-24
Identity = 93/283 (32.86%), Postives = 136/283 (48.06%), Query Frame = 0 
Query:   12 AVILSIRSLAAAGS-FENFTLGTINLQQGWTVQDSFGTSVGTLFDQTIEDTQNSGRVWRMSNAHTTSGFSNHPFSPTTAQVAGEPGSSLWNDFGSDHTKPKNPPGYRANATIATFYTRVNFTSAT-GSPQPGLSLGLSLCAKQSNWRMTLIQLNDNGAGIDIVYWD------NTVNQFNNGSIFSSTRIASGLSYTAVHSLEMVTYFKDGFNNDVVNIFLDGTLIHTGSTWEVYYYFLGDVDIQPRLQAVDSLLVRSSGTAQPEYEDGGFFFTEIDVSTYIPP 287
            A+   I S  A GS FE+F LG+++ Q GW +   +   V    D +        R  R+SNA T+ GF +  FS    + AGE  +    + G   T P+            +F    +F SA  G+ QPGLS+ +S   +    RM  + + D   G+++ Y+        T    +N   F  T +A+GL  TAVH+  +   F DG +NDVV +F+DGTL+HTG +WE Y+         P  + VDSLL R SGTA P     GF   ++ + +  PP
Sbjct:   23 AINTPIASADAVGSDFESFALGSVDGQDGWEISGPYDVEV---VDASATHPSLGNRSLRISNAVTSGGFGDQTFSKPLTEEAGETDA----ENGGKSTGPRQ----------TSFEAEWSFASAAPGAEQPGLSVVVSP-DRGDGGRMGWLGMTDTPTGLEVSYYGYDTTLGGTCADLDN---FVFTTVATGLDRTAVHTARLRMGFNDGVDNDVVEVFVDGTLVHTGKSWEDYFRNCE----PPEPRTVDSLLFRVSGTAAPATSGFGFLIDDVSLESSSPP 280
The following BLAST results are available for this feature:
BLAST of NO02G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_041298197.12.600e-2432.86HYR domain-containing protein [Ilumatobacter cocci... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00010NO02G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00010.1NO02G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00010.1.cds1NO02G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00010.1.cds2NO02G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00010.1.cds3NO02G00010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00010.1 ID=NO02G00010.1|Name=NO02G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
ATGCTCTCCATCTTCCGCTTAGAACATTTCATTGCCGTCATATTGTCAAT
TCGTTCTCTAGCCGCTGCGGGATCTTTCGAGAACTTTACGCTTGGGACCA
TCAACCTGCAGCAGGGCTGGACAGTGCAAGATTCATTTGGGACCTCTGTC
GGCACCCTTTTTGATCAAACAATCGAGGACACCCAGAATAGCGGCCGTGT
GTGGCGCATGTCAAATGCCCATACAACTTCTGGGTTTTCCAATCATCCCT
TTTCGCCCACGACAGCACAAGTGGCAGGTGAACCGGGCAGTAGCCTTTGG
AACGACTTTGGGAGCGACCATACCAAGCCTAAAAATCCACCGGGCTACCG
AGCCAATGCCACGATCGCCACCTTCTACACGCGCGTGAATTTCACGTCCG
CCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGACTGTCCCTGTGTGCC
AAGCAGTCAAACTGGCGCATGACCTTGATCCAGCTGAATGACAACGGTGC
GGGTATCGATATCGTTTACTGGGATAATACGGTGAACCAGTTTAATAACG
GTTCTATATTCAGCAGCACTCGTATCGCCTCTGGCTTATCCTACACTGCG
GTTCACTCCCTGGAGATGGTTACATACTTCAAAGATGGATTTAATAATGA
CGTTGTCAATATCTTTCTGGACGGCACCCTTATTCATACCGGCAGCACAT
GGGAGGTATATTACTACTTTTTGGGAGACGTGGACATCCAGCCGCGTCTT
CAGGCAGTTGACTCACTTCTAGTACGATCCAGTGGGACGGCGCAGCCAGA
ATACGAAGATGGAGGCTTTTTTTTTACTGAGATAGATGTATCCACATATA
TCCCTCCCGCAGTACCAGTAATACTGCCCACTCCCGTCGGGGAAAGAGTG
ATTTTGCAATTTGATCTGACTGATGGCGATAGCAACAATGTCAGTGGACA
GATTGAATTCGCCGAGGTCACCAGCCCCGGATTCACGACTTTTACCAATG
TGAACGTCACCGCTGGTGAGGCGGATCCATTGTATGTGCCGCCAAGCAAT
TTTGTCCTCGGCACCCCTCCCATCTATATTGACATTTCTACCGACGCTGT
CATTTCACCTCCAGTCCTTGTCTGCTTGACATACGCAACCAGCGCCTTTC
CCGAGAATACAGAACCACAAATATTTCATTTTATTGGAGAACGGTGGGTG
GATGCGACCACTCGCATCAATACGACGGCCCAAATTGTCTGCGGTGAGGT
CCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTATCATCACGCCTGATG
CTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAGCAAAACCAAAAGGAT
GCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAATATCACGACCAATGA
TCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGTTTGAAGTGTATGGCC
AGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGCAAAAATTGTCGTCGC
ATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATGCCGTATGAAGCAGGG
ACAGATATCGACAACTGCTCGTGCCACCTTCAAGCAGTACAAGCAGAGTA
GCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGTACTTTTGACATCACG
ACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCGAATCATAACACCAAC
TAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCTGCAAAGAATCCTCGT
CCAGGATGCGCTGCGTTGCAGCTTAA
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protein sequence of NO02G00010.1

>NO02G00010.1-protein ID=NO02G00010.1-protein|Name=NO02G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MLSIFRLEHFIAVILSIRSLAAAGSFENFTLGTINLQQGWTVQDSFGTSV
GTLFDQTIEDTQNSGRVWRMSNAHTTSGFSNHPFSPTTAQVAGEPGSSLW
NDFGSDHTKPKNPPGYRANATIATFYTRVNFTSATGSPQPGLSLGLSLCA
KQSNWRMTLIQLNDNGAGIDIVYWDNTVNQFNNGSIFSSTRIASGLSYTA
VHSLEMVTYFKDGFNNDVVNIFLDGTLIHTGSTWEVYYYFLGDVDIQPRL
QAVDSLLVRSSGTAQPEYEDGGFFFTEIDVSTYIPPAVPVILPTPVGERV
ILQFDLTDGDSNNVSGQIEFAEVTSPGFTTFTNVNVTAGEADPLYVPPSN
FVLGTPPIYIDISTDAVISPPVLVCLTYATSAFPENTEPQIFHFIGERWV
DATTRINTTAQIVCGEVQSLSPFAVGSLIITPDAFAVNRLRLKDKQNQKD
AWTLSGLFETANITTNDLLEAMDGKGVQFEVYGQRGLISSVVFEGKNCRR
IGRSASTEKLSCRMKQGQISTTARATFKQYKQSSRLFVKATFSGCTFDIT
TSLRSLTPLKVRIITPTSLGALDSPSLRCKESSSRMRCVAA*
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mRNA from alignment at chr2:1610..3678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00010.1 ID=NO02G00010.1|Name=NO02G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2069bp|location=Sequence derived from alignment at chr2:1610..3678- (Nannochloropsis oceanica)
ATGCTCTCCATCTTCCGCTTAGAACATTTCATTGCCGTCATATTGTCAAT
TGTAAGTCAATATTTGTCTGAGGGAAACGGGAGAGGGTAAGCAGAGACAA
GAGCAATGCTATCTCTGACCACGTATAATTCATTTACTATGATTGCTTAA
ATAAAGCGTTCTCTAGCCGCTGCGGGATCTTTCGAGAACTTTACGCTTGG
GACCATCAACCTGCAGCAGGGCTGGACAGTGCAAGATTCATTTGGGACCT
CTGTCGGCACCCTTTTTGATCAAACAATCGAGGACACCCAGAATAGCGGC
CGTGTGTGGCGCATGTCAAATGCCCATACAACTTCTGGGTTTTCCAATCA
TCCCTTTTCGCCCACGACAGCACAAGTGGCAGGTGAACCGGGCAGTAGCC
TTTGGAACGACTTTGGGAGCGACCATACCAAGCCTAAAAATCCACCGGGC
TACCGAGCCAATGCCACGATCGCCACCTTCTACACGCGCGTGAATTTCAC
GTCCGCCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGACTGTCCCTGT
GTGCCAAGCAGTCAAACTGGCGCATGACCTTGATCCAGCTGAATGACAAC
GGTGCGGGTATCGATATCGTTTACTGGGATAATACGGTGAACCAGTTTAA
TAACGGTTCTATATTCAGCAGCACTCGTATCGCCTCTGGCTTATCCTACA
CTGCGGTTCACTCCCTGGAGATGGTTACATACTTCAAAGATGGATTTAAT
AATGACGTTGTCAATATCTTTCTGGACGGCACCCTTATTCATACCGGCAG
CACATGGGAGGTATATTACTACTTTTTGGGAGACGTGGACATCCAGCCGC
GTCTTCAGGCAGTTGACTCACTTCTAGTACGATCCAGTGGGACGGCGCAG
CCAGAATACGAAGATGGAGGCTTTTTTTTTACTGAGATAGATGTATCCAC
ATATATCCCTCCCGCAGTACCAGTAATACTGCCCACTCCCGTCGGGGAAA
GAGTGATTTTGCAATTTGATCTGACTGATGGCGATAGCAACAATGTCAGT
GGACAGATTGAATTCGCCGAGGTCACCAGCCCCGGATTCACGGTAAGCGA
ACACATGATGATGTGCGTAGGAAGATGCACCCTACCGGTGCGCCCGTCTT
CAGTGTAATTTCTTTGCCCATCTTACGAGTCCACCCCGAATACCTCGCGC
TGCCGCCACTGCGGCCATTTTTATCTCCTCCTGACTCCCACTACTCGTCA
ATAACTTCTCTCTCATCGTTCAATGAACAGACTTTTACCAATGTGAACGT
CACCGCTGGTGAGGCGGATCCATTGTATGTGCCGCCAAGCAATTTTGTCC
TCGGCACCCCTCCCATCTATATTGACATTTCTACCGACGCTGTCATTTCA
CCTCCAGTCCTTGTCTGCTTGACATACGCAACCAGCGCCTTTCCCGAGAA
TACAGAACCACAAATATTTCATTTTATTGGAGAACGGTGGGTGGATGCGA
CCACTCGCATCAATACGACGGCCCAAATTGTCTGCGGTGAGGTCCAGTCT
CTTAGTCCTTTTGCGGTAGGCTCCCTTATCATCACGCCTGATGCTTTCGC
GGTCAATCGCCTTCGACTAAAAGACAAGCAAAACCAAAAGGATGCCTGGA
CTTTGTCGGGCCTATTCGAGACCGCTAATATCACGACCAATGATCTGCTC
GAGGCTATGGACGGGAAAGGAGTCCAGTTTGAAGTGTATGGCCAGCGGGG
ACTCATCAGCAGCGTAGTCTTCGAGGGCAAAAATTGTCGTCGCATAGGGA
GGTCAGCTTCTACCGAAAAGCTCTCATGCCGTATGAAGCAGGGACAGATA
TCGACAACTGCTCGTGCCACCTTCAAGCAGTACAAGCAGAGTAGCCGCCT
CTTCGTTAAAGCCACATTTTCGGGATGTACTTTTGACATCACGACATCGC
TCAGATCTCTCACCCCCTTAAAGGTCCGAATCATAACACCAACTAGCCTT
GGAGCACTTGACTCTCCTTCACTTCGCTGCAAAGAATCCTCGTCCAGGAT
GCGCTGCGTTGCAGCTTAA
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Coding sequence (CDS) from alignment at chr2:1610..3678-

>NO02G00010.1 ID=NO02G00010.1|Name=NO02G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr2:1610..3678- (Nannochloropsis oceanica)
ATGCTCTCCATCTTCCGCTTAGAACATTTCATTGCCGTCATATTGTCAAT
TCGTTCTCTAGCCGCTGCGGGATCTTTCGAGAACTTTACGCTTGGGACCA
TCAACCTGCAGCAGGGCTGGACAGTGCAAGATTCATTTGGGACCTCTGTC
GGCACCCTTTTTGATCAAACAATCGAGGACACCCAGAATAGCGGCCGTGT
GTGGCGCATGTCAAATGCCCATACAACTTCTGGGTTTTCCAATCATCCCT
TTTCGCCCACGACAGCACAAGTGGCAGGTGAACCGGGCAGTAGCCTTTGG
AACGACTTTGGGAGCGACCATACCAAGCCTAAAAATCCACCGGGCTACCG
AGCCAATGCCACGATCGCCACCTTCTACACGCGCGTGAATTTCACGTCCG
CCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGACTGTCCCTGTGTGCC
AAGCAGTCAAACTGGCGCATGACCTTGATCCAGCTGAATGACAACGGTGC
GGGTATCGATATCGTTTACTGGGATAATACGGTGAACCAGTTTAATAACG
GTTCTATATTCAGCAGCACTCGTATCGCCTCTGGCTTATCCTACACTGCG
GTTCACTCCCTGGAGATGGTTACATACTTCAAAGATGGATTTAATAATGA
CGTTGTCAATATCTTTCTGGACGGCACCCTTATTCATACCGGCAGCACAT
GGGAGGTATATTACTACTTTTTGGGAGACGTGGACATCCAGCCGCGTCTT
CAGGCAGTTGACTCACTTCTAGTACGATCCAGTGGGACGGCGCAGCCAGA
ATACGAAGATGGAGGCTTTTTTTTTACTGAGATAGATGTATCCACATATA
TCCCTCCCGCAGTACCAGTAATACTGCCCACTCCCGTCGGGGAAAGAGTG
ATTTTGCAATTTGATCTGACTGATGGCGATAGCAACAATGTCAGTGGACA
GATTGAATTCGCCGAGGTCACCAGCCCCGGATTCACGACTTTTACCAATG
TGAACGTCACCGCTGGTGAGGCGGATCCATTGTATGTGCCGCCAAGCAAT
TTTGTCCTCGGCACCCCTCCCATCTATATTGACATTTCTACCGACGCTGT
CATTTCACCTCCAGTCCTTGTCTGCTTGACATACGCAACCAGCGCCTTTC
CCGAGAATACAGAACCACAAATATTTCATTTTATTGGAGAACGGTGGGTG
GATGCGACCACTCGCATCAATACGACGGCCCAAATTGTCTGCGGTGAGGT
CCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTATCATCACGCCTGATG
CTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAGCAAAACCAAAAGGAT
GCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAATATCACGACCAATGA
TCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGTTTGAAGTGTATGGCC
AGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGCAAAAATTGTCGTCGC
ATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATGCCGTATGAAGCAGGG
ACAGATATCGACAACTGCTCGTGCCACCTTCAAGCAGTACAAGCAGAGTA
GCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGTACTTTTGACATCACG
ACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCGAATCATAACACCAAC
TAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCTGCAAAGAATCCTCGT
CCAGGATGCGCTGCGTTGCAGCTTAA
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Synonyms
Publications