NO01G05550.1, NO01G05550.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05550.1
Unique Name	NO01G05550.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2790
Alignment location	chr1:1529549..1532338 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1529549..1532338 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G05550.1 vs.

BLAST of NO01G05550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05550	NO01G05550	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05550.1	NO01G05550.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05550.1.cds1	NO01G05550.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1529549..1532338-
coding sequence from alignment at chr1:1529549..1532338-

mRNA sequence

>NO01G05550.1 ID=NO01G05550.1|Name=NO01G05550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp
TCCAACGGCATCATTACGACGCGCTCTATGGGCCTTCTTTTTTGTGCTGC
CCATAGCTTTTCTTGTTTTGTCATGTATTCCCTTGCTCGCATGCTCACAG
GCGCACAATTCAACACTGCGAACACTACACATGCTCGTGAGCCGTGGCGG
GCCTTAACCTTGGTGCCATTTGGCCTTGTATGTGCAGGAGAGCGAAGCCC
ATATCTATCCGTTGTACTCTTTTTTGGCTGGCTGCTTCCTCTCTCCTCTA
GTGTGCGCGCCCACATCTGCGTCCACACCCCTGCGCGCCCCTTGCCTTGG
TGAAGGGTTTACACTCTTCTAAGGCCCTTCATGAACTTTGCGTTGATGTC
ATTCGGTCCTGTGTTCGCAGGAGGGCAGACCCCATACCAATTTTTGTTGT
GCTTTTTTTGGGTGTTGCTTCCTCTCTCAGCGCGCGCCCACATCCGCGTC
CACACCCCTACATGCCCCTCGCCTTGCCTTCCATCAAGACAAAGACAACC
TGCTCTTGTTCCTCACTTTCCATGAAGTGGATTGGCGTCTTTCCCTTAGG
GTTCATTTGCCCCTCGTGTCTTCCCCCCTCTAAACCAACTTGATGATGCC
CAGGAGATTCCTGATGATGATGTCGAGCCCACGCCCGCATCCTCGCAACA
ACACCACCATCACTGCCGCACACACATAGCATCCACACCAACATATTACC
TCATATACACAAACGACAGTAGCATCCATGCCTTTCGGTGTCCGTCGCTT
TTCTCCTTCCAAGGCCACTACTACCAACGCCCCTGCCGTTCCCCCAACTG
CATCTCCCGAGGAAGTAGTGCGAAACGAAGCACATTCGCACGTTGTGACT
GAATTGGAGCAAGTCATCGAAAAGGACAGGCAACGTACTGCTGCTATGGC
TGCAGCATCTGGTGCCGGGAACGCTCGTGCCCGTGGAGGAGGAAATGTGG
GGGAGGAGGAGTCGGTGAGCTCTCGCTTCTCCAACCGTTATGAGGACGAG
GAAGCCCCGTCCCCCGGTCGACAGTACCGCAACTCCCGCGGACAAAGCGG
TGCCCGTCAGTCCCGCCGTATCTCCCGTCCGGCTCCGTCTCGCCAGTACT
ACGGCGACAGCGGAGATGAGTACGATGATCACTACCCTGAAGATGAGGAG
GTCTCGCCTCGCCGGGCCGCCGGTCGCAGCCAACGCTACTCGCGCCGCAG
CTCCTCGGGTGCCAACAGCGAGAGTGCCCTGGTCGTGCACCAGAAGCCCG
GTGTTGTGGTGGTAGACGATGGGGAGGAGGTGGCGGGGGGCTGCTGCCAC
GGGGTCAGGACTTGCGCCAAGGTCACCTACGACATTTTTAGGTCCATCCC
TCTTCTCACCCTCGTGTGGGCAGGCGGGGCCATCGCCGCCTCCAATTTGG
GAGTGAGCAAGGTTCAGACCGTGGGAATGAATATCTCCATCCTCGAGAAC
TTGGAGGGACTATTCGTGTACATGACCTATTTCCTGTACTACATTTATGC
CGTCAACGCCGCGATCGCCCTCCTCTCCCTCCTCTTCACCGGCGCCACTC
TCGAGATTCTAGTGGGCAAATTCTGCTCCACCCGCGGATGTGGCGGTGGA
TTCAAACGCTTTTCTGTCCGGTCCGTGCAAGCGTTCTTCTTTCCCCTCTC
CTACATCGGCTTCCTGGCTACGCTGGGCCTTTTTCTGCTCACCGTCCTCC
TCGCCTCCCTCGTCCTCACGACCAACCAAGCTTGCGGTGCCGGAGCCACC
CTCGGGGCGGATGCCGCCGCTGCTAGCCTCTCTGCGGTGCTTAACACAGT
CACTCATTGGATGGGCCTCAAGTCCGTGGCCATTTCGGGCGCCGAGCTGG
CTGGATATTGCGCGAGCCCGCATGCCCTGTCCTCGTGGTTCTGGCGAATG
ACCTTCATCTATGTGGCCGCCGCCACCATCTTCCAAGCGAACCTGGCAGT
CTCCGCCTGGACAATCTTCTTGAACACGGGCCACGAGATGAAGAAGGCCG
AGCTGGGACGGGCACACGCGGAGCAGCTGACGCAGGTGCTGGCCAAGGCC
GGGAGGGAAGGAGGGGTGATGATGAAGAGGCCGCGCTCGGTGTCGAGCAT
GGGAGGGAGAGGAAGGCCATATGCCAGCAGCAGGGCAGAGGCGAAGGAGG
CGGAGTACTACTACGACGATGATATTTGTTAAATGGAGGGAGAGAGTTGC
ACAGATTATTCAAGATTATACACGCACACGGACAAGAGTTTTTTCCAATC
TACTATCATTACTATATTATCAATAAAATTGTTGATGTTAATGGTCATCG
TATTCCATAAAGAGATATCTGAGCACCGAGGTGCATGAAGGCGAAAGAGA
AGGAAGGGAGGGAGAGAAGGATGGTCAGGGATTCTGTTTTGAGGACGAGA
TTGAGATAAGAAACGGGAGGACAGAAGAGAGAGGGAACAGCGAATCTTTC
GCAAAGCAGCCATAAAATGTTTGTTTCGGAGCGCCCACAGTATATACACA
CCACGACGACACGAAGAGGGGGACAGGGGGAAAATGACGGGAGAGCAGGG
AGGAGCAAGGGAGGTGAGAGAGAAAAGGCACGCAGGGGAGACGGGAGGGA
GGGAGGAAGAAGAGGAAAGGAGGGGCTATGGCCCTCCAAAGACTCTTCTT
GCTCGCTCATATTTACTCAAGAGAAAAGGAACTACAGATACCCCGACCTT
CCCAGGCGCCGCGCACATAAACAGATACAGAAAAAAGACCAAGAGGAAGA
AAAAGAAAGGGAAAAAACAGCATATCACACCAGCCGTGGA

protein sequence of NO01G05550.1

>NO01G05550.1-protein ID=NO01G05550.1-protein|Name=NO01G05550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MPFGVRRFSPSKATTTNAPAVPPTASPEEVVRNEAHSHVVTELEQVIEKD
RQRTAAMAAASGAGNARARGGGNVGEEESVSSRFSNRYEDEEAPSPGRQY
RNSRGQSGARQSRRISRPAPSRQYYGDSGDEYDDHYPEDEEVSPRRAAGR
SQRYSRRSSSGANSESALVVHQKPGVVVVDDGEEVAGGCCHGVRTCAKVT
YDIFRSIPLLTLVWAGGAIAASNLGVSKVQTVGMNISILENLEGLFVYMT
YFLYYIYAVNAAIALLSLLFTGATLEILVGKFCSTRGCGGGFKRFSVRSV
QAFFFPLSYIGFLATLGLFLLTVLLASLVLTTNQACGAGATLGADAAAAS
LSAVLNTVTHWMGLKSVAISGAELAGYCASPHALSSWFWRMTFIYVAAAT
IFQANLAVSAWTIFLNTGHEMKKAELGRAHAEQLTQVLAKAGREGGVMMK
RPRSVSSMGGRGRPYASSRAEAKEAEYYYDDDIC*

mRNA from alignment at chr1:1529549..1532338-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05550.1 ID=NO01G05550.1|Name=NO01G05550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp|location=Sequence derived from alignment at chr1:1529549..1532338- (Nannochloropsis oceanica)
TCCAACGGCATCATTACGACGCGCTCTATGGGCCTTCTTTTTTGTGCTGC
CCATAGCTTTTCTTGTTTTGTCATGTATTCCCTTGCTCGCATGCTCACAG
GCGCACAATTCAACACTGCGAACACTACACATGCTCGTGAGCCGTGGCGG
GCCTTAACCTTGGTGCCATTTGGCCTTGTATGTGCAGGAGAGCGAAGCCC
ATATCTATCCGTTGTACTCTTTTTTGGCTGGCTGCTTCCTCTCTCCTCTA
GTGTGCGCGCCCACATCTGCGTCCACACCCCTGCGCGCCCCTTGCCTTGG
TGAAGGGTTTACACTCTTCTAAGGCCCTTCATGAACTTTGCGTTGATGTC
ATTCGGTCCTGTGTTCGCAGGAGGGCAGACCCCATACCAATTTTTGTTGT
GCTTTTTTTGGGTGTTGCTTCCTCTCTCAGCGCGCGCCCACATCCGCGTC
CACACCCCTACATGCCCCTCGCCTTGCCTTCCATCAAGACAAAGACAACC
TGCTCTTGTTCCTCACTTTCCATGAAGTGGATTGGCGTCTTTCCCTTAGG
GTTCATTTGCCCCTCGTGTCTTCCCCCCTCTAAACCAACTTGATGATGCC
CAGGAGATTCCTGATGATGATGTCGAGCCCACGCCCGCATCCTCGCAACA
ACACCACCATCACTGCCGCACACACATAGCATCCACACCAACATATTACC
TCATATACACAAACGACAGTAGCATCCATGCCTTTCGGTGTCCGTCGCTT
TTCTCCTTCCAAGGCCACTACTACCAACGCCCCTGCCGTTCCCCCAACTG
CATCTCCCGAGGAAGTAGTGCGAAACGAAGCACATTCGCACGTTGTGACT
GAATTGGAGCAAGTCATCGAAAAGGACAGGCAACGTACTGCTGCTATGGC
TGCAGCATCTGGTGCCGGGAACGCTCGTGCCCGTGGAGGAGGAAATGTGG
GGGAGGAGGAGTCGGTGAGCTCTCGCTTCTCCAACCGTTATGAGGACGAG
GAAGCCCCGTCCCCCGGTCGACAGTACCGCAACTCCCGCGGACAAAGCGG
TGCCCGTCAGTCCCGCCGTATCTCCCGTCCGGCTCCGTCTCGCCAGTACT
ACGGCGACAGCGGAGATGAGTACGATGATCACTACCCTGAAGATGAGGAG
GTCTCGCCTCGCCGGGCCGCCGGTCGCAGCCAACGCTACTCGCGCCGCAG
CTCCTCGGGTGCCAACAGCGAGAGTGCCCTGGTCGTGCACCAGAAGCCCG
GTGTTGTGGTGGTAGACGATGGGGAGGAGGTGGCGGGGGGCTGCTGCCAC
GGGGTCAGGACTTGCGCCAAGGTCACCTACGACATTTTTAGGTCCATCCC
TCTTCTCACCCTCGTGTGGGCAGGCGGGGCCATCGCCGCCTCCAATTTGG
GAGTGAGCAAGGTTCAGACCGTGGGAATGAATATCTCCATCCTCGAGAAC
TTGGAGGGACTATTCGTGTACATGACCTATTTCCTGTACTACATTTATGC
CGTCAACGCCGCGATCGCCCTCCTCTCCCTCCTCTTCACCGGCGCCACTC
TCGAGATTCTAGTGGGCAAATTCTGCTCCACCCGCGGATGTGGCGGTGGA
TTCAAACGCTTTTCTGTCCGGTCCGTGCAAGCGTTCTTCTTTCCCCTCTC
CTACATCGGCTTCCTGGCTACGCTGGGCCTTTTTCTGCTCACCGTCCTCC
TCGCCTCCCTCGTCCTCACGACCAACCAAGCTTGCGGTGCCGGAGCCACC
CTCGGGGCGGATGCCGCCGCTGCTAGCCTCTCTGCGGTGCTTAACACAGT
CACTCATTGGATGGGCCTCAAGTCCGTGGCCATTTCGGGCGCCGAGCTGG
CTGGATATTGCGCGAGCCCGCATGCCCTGTCCTCGTGGTTCTGGCGAATG
ACCTTCATCTATGTGGCCGCCGCCACCATCTTCCAAGCGAACCTGGCAGT
CTCCGCCTGGACAATCTTCTTGAACACGGGCCACGAGATGAAGAAGGCCG
AGCTGGGACGGGCACACGCGGAGCAGCTGACGCAGGTGCTGGCCAAGGCC
GGGAGGGAAGGAGGGGTGATGATGAAGAGGCCGCGCTCGGTGTCGAGCAT
GGGAGGGAGAGGAAGGCCATATGCCAGCAGCAGGGCAGAGGCGAAGGAGG
CGGAGTACTACTACGACGATGATATTTGTTAAATGGAGGGAGAGAGTTGC
ACAGATTATTCAAGATTATACACGCACACGGACAAGAGTTTTTTCCAATC
TACTATCATTACTATATTATCAATAAAATTGTTGATGTTAATGGTCATCG
TATTCCATAAAGAGATATCTGAGCACCGAGGTGCATGAAGGCGAAAGAGA
AGGAAGGGAGGGAGAGAAGGATGGTCAGGGATTCTGTTTTGAGGACGAGA
TTGAGATAAGAAACGGGAGGACAGAAGAGAGAGGGAACAGCGAATCTTTC
GCAAAGCAGCCATAAAATGTTTGTTTCGGAGCGCCCACAGTATATACACA
CCACGACGACACGAAGAGGGGGACAGGGGGAAAATGACGGGAGAGCAGGG
AGGAGCAAGGGAGGTGAGAGAGAAAAGGCACGCAGGGGAGACGGGAGGGA
GGGAGGAAGAAGAGGAAAGGAGGGGCTATGGCCCTCCAAAGACTCTTCTT
GCTCGCTCATATTTACTCAAGAGAAAAGGAACTACAGATACCCCGACCTT
CCCAGGCGCCGCGCACATAAACAGATACAGAAAAAAGACCAAGAGGAAGA
AAAAGAAAGGGAAAAAACAGCATATCACACCAGCCGTGGA

Coding sequence (CDS) from alignment at chr1:1529549..1532338-

>NO01G05550.1 ID=NO01G05550.1|Name=NO01G05550.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr1:1529549..1532338- (Nannochloropsis oceanica)
ATGCCTTTCGGTGTCCGTCGCTTTTCTCCTTCCAAGGCCACTACTACCAA
CGCCCCTGCCGTTCCCCCAACTGCATCTCCCGAGGAAGTAGTGCGAAACG
AAGCACATTCGCACGTTGTGACTGAATTGGAGCAAGTCATCGAAAAGGAC
AGGCAACGTACTGCTGCTATGGCTGCAGCATCTGGTGCCGGGAACGCTCG
TGCCCGTGGAGGAGGAAATGTGGGGGAGGAGGAGTCGGTGAGCTCTCGCT
TCTCCAACCGTTATGAGGACGAGGAAGCCCCGTCCCCCGGTCGACAGTAC
CGCAACTCCCGCGGACAAAGCGGTGCCCGTCAGTCCCGCCGTATCTCCCG
TCCGGCTCCGTCTCGCCAGTACTACGGCGACAGCGGAGATGAGTACGATG
ATCACTACCCTGAAGATGAGGAGGTCTCGCCTCGCCGGGCCGCCGGTCGC
AGCCAACGCTACTCGCGCCGCAGCTCCTCGGGTGCCAACAGCGAGAGTGC
CCTGGTCGTGCACCAGAAGCCCGGTGTTGTGGTGGTAGACGATGGGGAGG
AGGTGGCGGGGGGCTGCTGCCACGGGGTCAGGACTTGCGCCAAGGTCACC
TACGACATTTTTAGGTCCATCCCTCTTCTCACCCTCGTGTGGGCAGGCGG
GGCCATCGCCGCCTCCAATTTGGGAGTGAGCAAGGTTCAGACCGTGGGAA
TGAATATCTCCATCCTCGAGAACTTGGAGGGACTATTCGTGTACATGACC
TATTTCCTGTACTACATTTATGCCGTCAACGCCGCGATCGCCCTCCTCTC
CCTCCTCTTCACCGGCGCCACTCTCGAGATTCTAGTGGGCAAATTCTGCT
CCACCCGCGGATGTGGCGGTGGATTCAAACGCTTTTCTGTCCGGTCCGTG
CAAGCGTTCTTCTTTCCCCTCTCCTACATCGGCTTCCTGGCTACGCTGGG
CCTTTTTCTGCTCACCGTCCTCCTCGCCTCCCTCGTCCTCACGACCAACC
AAGCTTGCGGTGCCGGAGCCACCCTCGGGGCGGATGCCGCCGCTGCTAGC
CTCTCTGCGGTGCTTAACACAGTCACTCATTGGATGGGCCTCAAGTCCGT
GGCCATTTCGGGCGCCGAGCTGGCTGGATATTGCGCGAGCCCGCATGCCC
TGTCCTCGTGGTTCTGGCGAATGACCTTCATCTATGTGGCCGCCGCCACC
ATCTTCCAAGCGAACCTGGCAGTCTCCGCCTGGACAATCTTCTTGAACAC
GGGCCACGAGATGAAGAAGGCCGAGCTGGGACGGGCACACGCGGAGCAGC
TGACGCAGGTGCTGGCCAAGGCCGGGAGGGAAGGAGGGGTGATGATGAAG
AGGCCGCGCTCGGTGTCGAGCATGGGAGGGAGAGGAAGGCCATATGCCAG
CAGCAGGGCAGAGGCGAAGGAGGCGGAGTACTACTACGACGATGATATTT
GTTAA

Synonyms

Publications