NO01G05390.1, NO01G05390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05390.1
Unique NameNO01G05390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr1:1457951..1459378 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1457951..1459378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05390.1 vs.
Match: ARF09909.1 (glycosyltransferase [Indivirus ILV1])

HSP 1 Score: 189.5 bits (480), Expect = 2.400e-44
Identity = 137/465 (29.46%), Postives = 237/465 (50.97%), Query Frame = 0 
Query:    7 RIAVENNTAKYIATDNTDVIQKFEALLSFIRKHAGLRENGELLSVLEKENLVEMPDFYDNLFFKSALDIIKCVQGN-HDNLAKHFAEVHRHIQPYAIYFPQFYPIPENNVNFYEGYTDMTNLVAAKLE--DPSLLTPLKNLLGFYDLVQNVEVIPRQIKIAKSFGMAGFAIYYYWFSDNS-ISHKHMIFQEVIDRFFDTVLEN--FSLFFVYCNEAWTKNVAFGTHRGGYTIANNYTEENVKANMQN-LVTYFRHPNYRKIRNRPVLFLHHPHEMTGTEIRLLKTVGDSITQENGFDGIELVMDSKEGMYPYFS----GYYLHA-NYKSAKAKEFMNTSTRPKHIDYKAYVREFLPK-EKKLGDNASTINSVFTNFDNTVRFYAHEGDRQFEDVGNKAMFMTRTQGRSVTLFKEFLDVQLKKYSQ-KSDPISQIFLINAWNEWGEQMVMEPSNEEGFAYLEAFQE 458
            R+    NT  Y    NT +I+K++  ++ +     + +  +  +++ +   +++P  Y  L+  + + I+K +    +DN  K +  +H+ I+P+ IYFPQ++ + ENN  FYE YTDM NL   K    +  + TPL   +GFYDL+ + ++I RQI  A+S+G+ GFA+Y+YWFS N     K  +  + I++ F    ++  F ++F++  E W   + +G           Y  E+   N  N L+ +F++  Y KI N+PV  +     +  T ++ +      +  ++GFDG+ +++      YP ++     YY++A  +K+AK    +        +DY  Y+  +  +   KL +    I ++F  FDN  R Y       F+ +             ++  F+ +L+   K Y+  K+D  SQIFLINAWNEWGE M +EPSNE  F YLE  ++
Sbjct:  374 RLEDRYNTNVYPYQKNT-LIEKYKECINDL-----IIKGNDNYNMISEGFEMQVPSEYYGLYNSNVIPIMKSLTAQLYDNKEK-YELIHKKIKPFCIYFPQYHEVEENNFKFYEKYTDMINLKILKENNLEYDVNTPLDEWIGFYDLIDDDDIIRRQILTARSYGIYGFAMYHYWFSINMYFPTKPKVMYKFIEKLFSNKYDDLYFPIYFIWAIENWNSKLIYG-----------YNNESDWINHFNYLLIFFKNKKYFKIDNKPVFSILGHSNVPETFLKRMIDCWKRLAIKSGFDGLYIIL-LMHYNYPMYNTCCDAYYINAPAWKNAKLYGEIYKENNTHIVDYNYYLDPWEDEILSKLPERTDKILNIFPGFDNIARNYFKGTISNFKYI-----------NANIANFEIYLNKLFKMYNNYKND--SQIFLINAWNEWGENMSVEPSNEYQFQYLECIKQ 806
The following BLAST results are available for this feature:
BLAST of NO01G05390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ARF09909.12.400e-4429.46glycosyltransferase [Indivirus ILV1][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05390NO01G05390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05390.1NO01G05390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05390.1.cds1NO01G05390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05390.1 ID=NO01G05390.1|Name=NO01G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
ATGGGTGCAATTGCCAACCGGATTGCTGTGGAGAACAACACCGCAAAATA
TATCGCCACTGACAATACTGATGTGATCCAAAAGTTTGAGGCTTTGCTCT
CCTTTATTCGAAAACACGCTGGCTTGCGAGAGAATGGCGAGCTGTTGTCC
GTGCTTGAAAAGGAAAATCTCGTCGAAATGCCAGACTTTTACGATAACCT
CTTTTTTAAAAGCGCTTTAGATATCATCAAGTGCGTCCAAGGAAACCACG
ACAATTTAGCCAAGCATTTCGCCGAAGTCCATCGCCATATTCAACCATAT
GCTATCTATTTCCCTCAATTTTATCCCATCCCTGAAAATAATGTCAATTT
CTATGAGGGCTACACGGATATGACGAATTTAGTCGCAGCCAAACTGGAGG
ATCCCAGCTTACTGACACCACTGAAAAATCTGTTGGGCTTTTACGATTTG
GTGCAAAACGTGGAGGTAATTCCAAGGCAAATCAAGATTGCAAAGTCATT
TGGCATGGCTGGATTTGCCATTTATTACTATTGGTTCAGCGACAATTCTA
TTAGCCACAAACACATGATCTTCCAAGAGGTGATAGATCGCTTTTTTGAC
ACTGTATTAGAGAATTTCTCACTCTTCTTTGTGTATTGCAATGAAGCGTG
GACAAAGAACGTGGCTTTTGGAACGCATAGGGGTGGATACACGATTGCTA
ACAACTATACTGAAGAGAACGTCAAGGCGAATATGCAAAATCTCGTCACG
TATTTTAGACACCCAAATTATCGCAAAATCAGAAATCGGCCGGTCCTCTT
TTTGCACCACCCGCATGAAATGACAGGTACAGAGATTCGCTTGTTGAAGA
CAGTTGGCGATTCAATAACTCAAGAGAACGGTTTTGATGGCATTGAACTG
GTCATGGACAGCAAGGAAGGGATGTACCCATATTTCTCTGGCTACTACTT
GCATGCAAATTACAAATCCGCAAAAGCCAAGGAGTTCATGAACACGTCAA
CCCGCCCCAAGCATATCGACTACAAAGCGTATGTGCGCGAATTCTTGCCG
AAGGAAAAGAAGTTGGGAGACAATGCGAGCACGATAAACTCAGTTTTCAC
AAATTTTGACAACACCGTGCGTTTTTATGCCCACGAAGGGGACCGACAAT
TCGAGGATGTGGGCAACAAGGCAATGTTCATGACACGGACTCAAGGAAGA
AGTGTCACGCTTTTTAAGGAGTTTTTAGATGTGCAACTTAAGAAATACTC
TCAAAAGTCTGATCCCATTTCACAGATATTCCTCATCAATGCTTGGAACG
AATGGGGTGAGCAAATGGTGATGGAGCCGTCGAATGAAGAGGGATTTGCT
TACCTTGAAGCCTTTCAGGAGAGATTATTACTTACCCCTCTTCCAGATAG
CGCACTTAGCAATGCATGGAATCAATGA
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protein sequence of NO01G05390.1

>NO01G05390.1-protein ID=NO01G05390.1-protein|Name=NO01G05390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MGAIANRIAVENNTAKYIATDNTDVIQKFEALLSFIRKHAGLRENGELLS
VLEKENLVEMPDFYDNLFFKSALDIIKCVQGNHDNLAKHFAEVHRHIQPY
AIYFPQFYPIPENNVNFYEGYTDMTNLVAAKLEDPSLLTPLKNLLGFYDL
VQNVEVIPRQIKIAKSFGMAGFAIYYYWFSDNSISHKHMIFQEVIDRFFD
TVLENFSLFFVYCNEAWTKNVAFGTHRGGYTIANNYTEENVKANMQNLVT
YFRHPNYRKIRNRPVLFLHHPHEMTGTEIRLLKTVGDSITQENGFDGIEL
VMDSKEGMYPYFSGYYLHANYKSAKAKEFMNTSTRPKHIDYKAYVREFLP
KEKKLGDNASTINSVFTNFDNTVRFYAHEGDRQFEDVGNKAMFMTRTQGR
SVTLFKEFLDVQLKKYSQKSDPISQIFLINAWNEWGEQMVMEPSNEEGFA
YLEAFQERLLLTPLPDSALSNAWNQ*
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mRNA from alignment at chr1:1457951..1459378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05390.1 ID=NO01G05390.1|Name=NO01G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at chr1:1457951..1459378- (Nannochloropsis oceanica)
ATGGGTGCAATTGCCAACCGGATTGCTGTGGAGAACAACACCGCAAAATA
TATCGCCACTGACAATACTGATGTGATCCAAAAGTTTGAGGCTTTGCTCT
CCTTTATTCGAAAACACGCTGGCTTGCGAGAGAATGGCGAGCTGTTGTCC
GTGCTTGAAAAGGAAAATCTCGTCGAAATGCCAGACTTTTACGATAACCT
CTTTTTTAAAAGCGCTTTAGATATCATCAAGTGCGTCCAAGGAAACCACG
ACAATTTAGCCAAGCATTTCGCCGAAGTCCATCGCCATATTCAACCATAT
GCTATCTATTTCCCTCAATTTTATCCCATCCCTGAAAATAATGTCAATTT
CTATGAGGGCTACACGGATATGACGAATTTAGTCGCAGCCAAACTGGAGG
ATCCCAGCTTACTGACACCACTGAAAAATCTGTTGGGCTTTTACGATTTG
GTGCAAAACGTGGAGGTAATTCCAAGGCAAATCAAGATTGCAAAGTCATT
TGGCATGGCTGGATTTGCCATTTATTACTATTGGTTCAGCGACAATTCTA
TTAGCCACAAACACATGATCTTCCAAGAGGTGATAGATCGCTTTTTTGAC
ACTGTATTAGAGAATTTCTCACTCTTCTTTGTGTATTGCAATGAAGCGTG
GACAAAGAACGTGGCTTTTGGAACGCATAGGGGTGGATACACGATTGCTA
ACAACTATACTGAAGAGAACGTCAAGGCGAATATGCAAAATCTCGTCACG
TATTTTAGACACCCAAATTATCGCAAAATCAGAAATCGGCCGGTCCTCTT
TTTGCACCACCCGCATGAAATGACAGGTACAGAGATTCGCTTGTTGAAGA
CAGTTGGCGATTCAATAACTCAAGAGAACGGTTTTGATGGCATTGAACTG
GTCATGGACAGCAAGGAAGGGATGTACCCATATTTCTCTGGCTACTACTT
GCATGCAAATTACAAATCCGCAAAAGCCAAGGAGTTCATGAACACGTCAA
CCCGCCCCAAGCATATCGACTACAAAGCGTATGTGCGCGAATTCTTGCCG
AAGGAAAAGAAGTTGGGAGACAATGCGAGCACGATAAACTCAGTTTTCAC
AAATTTTGACAACACCGTGCGTTTTTATGCCCACGAAGGGGACCGACAAT
TCGAGGATGTGGGCAACAAGGCAATGTTCATGACACGGACTCAAGGAAGA
AGTGTCACGCTTTTTAAGGAGTTTTTAGATGTGCAACTTAAGAAATACTC
TCAAAAGTCTGATCCCATTTCACAGATATTCCTCATCAATGCTTGGAACG
AATGGGGTGAGCAAATGGTGATGGAGCCGTCGAATGAAGAGGGATTTGCT
TACCTTGAAGCCTTTCAGGAGAGATTATTACTTACCCCTCTTCCAGATAG
CGCACTTAGCAATGCATGGAATCAATGA
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Coding sequence (CDS) from alignment at chr1:1457951..1459378-

>NO01G05390.1 ID=NO01G05390.1|Name=NO01G05390.1|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at chr1:1457951..1459378- (Nannochloropsis oceanica)
ATGGGTGCAATTGCCAACCGGATTGCTGTGGAGAACAACACCGCAAAATA
TATCGCCACTGACAATACTGATGTGATCCAAAAGTTTGAGGCTTTGCTCT
CCTTTATTCGAAAACACGCTGGCTTGCGAGAGAATGGCGAGCTGTTGTCC
GTGCTTGAAAAGGAAAATCTCGTCGAAATGCCAGACTTTTACGATAACCT
CTTTTTTAAAAGCGCTTTAGATATCATCAAGTGCGTCCAAGGAAACCACG
ACAATTTAGCCAAGCATTTCGCCGAAGTCCATCGCCATATTCAACCATAT
GCTATCTATTTCCCTCAATTTTATCCCATCCCTGAAAATAATGTCAATTT
CTATGAGGGCTACACGGATATGACGAATTTAGTCGCAGCCAAACTGGAGG
ATCCCAGCTTACTGACACCACTGAAAAATCTGTTGGGCTTTTACGATTTG
GTGCAAAACGTGGAGGTAATTCCAAGGCAAATCAAGATTGCAAAGTCATT
TGGCATGGCTGGATTTGCCATTTATTACTATTGGTTCAGCGACAATTCTA
TTAGCCACAAACACATGATCTTCCAAGAGGTGATAGATCGCTTTTTTGAC
ACTGTATTAGAGAATTTCTCACTCTTCTTTGTGTATTGCAATGAAGCGTG
GACAAAGAACGTGGCTTTTGGAACGCATAGGGGTGGATACACGATTGCTA
ACAACTATACTGAAGAGAACGTCAAGGCGAATATGCAAAATCTCGTCACG
TATTTTAGACACCCAAATTATCGCAAAATCAGAAATCGGCCGGTCCTCTT
TTTGCACCACCCGCATGAAATGACAGGTACAGAGATTCGCTTGTTGAAGA
CAGTTGGCGATTCAATAACTCAAGAGAACGGTTTTGATGGCATTGAACTG
GTCATGGACAGCAAGGAAGGGATGTACCCATATTTCTCTGGCTACTACTT
GCATGCAAATTACAAATCCGCAAAAGCCAAGGAGTTCATGAACACGTCAA
CCCGCCCCAAGCATATCGACTACAAAGCGTATGTGCGCGAATTCTTGCCG
AAGGAAAAGAAGTTGGGAGACAATGCGAGCACGATAAACTCAGTTTTCAC
AAATTTTGACAACACCGTGCGTTTTTATGCCCACGAAGGGGACCGACAAT
TCGAGGATGTGGGCAACAAGGCAATGTTCATGACACGGACTCAAGGAAGA
AGTGTCACGCTTTTTAAGGAGTTTTTAGATGTGCAACTTAAGAAATACTC
TCAAAAGTCTGATCCCATTTCACAGATATTCCTCATCAATGCTTGGAACG
AATGGGGTGAGCAAATGGTGATGGAGCCGTCGAATGAAGAGGGATTTGCT
TACCTTGAAGCCTTTCAGGAGAGATTATTACTTACCCCTCTTCCAGATAG
CGCACTTAGCAATGCATGGAATCAATGA
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Synonyms
Publications