NO01G05270.1, NO01G05270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05270.1
Unique NameNO01G05270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1773
Alignment locationchr1:1405753..1407873 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1405753..1407873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05270.1 vs.
Match: EWM22744.1 (chromate transporter [Nannochloropsis gaditana])

HSP 1 Score: 651.4 bits (1679), Expect = 2.500e-183
Identity = 361/525 (68.76%), Postives = 420/525 (80.00%), Query Frame = 0 
Query:    6 EETSMAPLELGQDVEGGQLQQQQQQQQQQQQQQQQQQQQQQQQGKADGIEGKEELSHAGETRPVHYKLWELVRYILPAGCYAFGGPTVHLAVFHNLFVTKLHWLNDQEFVDLLALGMTLPGPTSSEFCVAVGTYRAGVLGALVAFLCFTLPSFIIMLLAGLGATHMDPNHIPDWMSGLAPAATALIFVAFANLGKKIVGGSPLKASIVLGSSSITLLVQNESRIPARAIMWILPLMLLVGGSLTLGEKVFKEYRARKQQAAAEARALSAPEQGEGRITEASTTQTGTAATTNTEDASSMGSTAVTSDTYDRVPVSKWSSMVAFLLIVGFLLYLLAMHVAKQTMGALMHIFSSFFIVGITIYGGGQVMLPLLVSVAVDPGWLSMDQFMVGFAVIQMMPGPLSNLAAYIGAIYMGVPGAVVGVIGFFLPGILLVIALLPLWDKVRKVSNVRPFLAGVNAMGLGLILAVGIALYLKMVRNPAAAVVNIITACLVGYLGYSSLVGVLVGALVGFLLSPTCLSWGQEPYL 531
            EE +  PLEL    EGG+         +   Q ++QQ+ +  QG     + KE  S++G +  + YKLWELVR+ILP GCYAFGGPT HLAVFH+LFV KL WL D+EFVDLLALGMTLPGPTSSEFC+AVGTYRAGVLGA+VAFLCFT+PSF IML AGLGATHMDPNH+PDWM GLAPAATALIFVAF  LG KIVG S L A I L ++S+TLLVQN++RIP R+IMWILPLML+VGGSLTL E+ ++  R R++ AAA           EGR   A++T  GT     TEDA  MGST V+SDTYD VPVSKWSS+VAFLLIV FLLYLL  H+AK+    L+H+FSSFFIVGITIYGGGQVMLPLLVSVAVDPGWLSMDQFMVGFA++QM PGPLSN AAYIGAIYMGVPGA+VGV+GFFLPGILL+IA+LPLW++VRK+ NVRPFLAG NA GLGLILAVG+AL+LK+VR PA AVV+I+ AC+VGYL YSS  GV+ GAL+GFL SPTCL+WGQ+ Y+
Sbjct:    2 EENTAVPLEL----EGGK---------EDGMQHERQQKMEVVQGHFS--DNKESPSNSGLSLSLRYKLWELVRHILPTGCYAFGGPTAHLAVFHDLFVKKLRWLTDKEFVDLLALGMTLPGPTSSEFCIAVGTYRAGVLGAIVAFLCFTVPSFFIMLAAGLGATHMDPNHVPDWMLGLAPAATALIFVAFGRLGLKIVGDSALNACISLIAASVTLLVQNDARIPPRSIMWILPLMLVVGGSLTLAERKYQNRRRRREGAAAVVVEDQEESGLEGR--SAASTNGGTG----TEDAGIMGSTDVSSDTYDHVPVSKWSSLVAFLLIVAFLLYLLVNHLAKRVEPPLLHVFSSFFIVGITIYGGGQVMLPLLVSVAVDPGWLSMDQFMVGFAIVQMTPGPLSNFAAYIGAIYMGVPGAIVGVVGFFLPGILLIIAVLPLWERVRKIPNVRPFLAGANATGLGLILAVGVALFLKVVRTPADAVVSIVIACVVGYLNYSSFKGVVFGALLGFLFSPTCLNWGQQAYI 505
The following BLAST results are available for this feature:
BLAST of NO01G05270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22744.12.500e-18368.76chromate transporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05270NO01G05270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05270.1NO01G05270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05270.1.cds1NO01G05270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05270.1.cds2NO01G05270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05270.1.cds3NO01G05270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05270.1.cds4NO01G05270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05270.1 ID=NO01G05270.1|Name=NO01G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp
ATGGCGGCCAGCGCGGAGGAAACGAGCATGGCGCCCCTGGAGCTAGGGCA
GGATGTAGAAGGAGGCCAGCTTCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAGCAGCAGCAACAGGGCAAG
GCAGACGGCATTGAAGGCAAAGAGGAGTTATCACATGCCGGTGAGACTCG
CCCGGTGCATTACAAGTTGTGGGAGTTGGTCCGCTACATCCTGCCCGCAG
GGTGCTACGCTTTTGGGGGACCCACGGTCCATCTGGCTGTCTTTCACAAT
TTGTTCGTGACCAAGCTGCATTGGCTGAATGATCAAGAGTTTGTAGATCT
CCTGGCCCTAGGTATGACTTTGCCTGGCCCTACAAGCTCCGAGTTCTGCG
TTGCTGTTGGAACCTACCGCGCTGGAGTGCTAGGTGCCCTGGTGGCTTTT
TTGTGCTTCACCTTGCCCAGCTTTATTATAATGCTTCTCGCAGGCTTGGG
TGCCACACATATGGATCCAAATCACATCCCAGACTGGATGTCGGGTCTAG
CTCCCGCAGCCACAGCCCTCATCTTTGTGGCCTTTGCTAACCTAGGCAAG
AAGATCGTGGGTGGCTCACCATTGAAGGCAAGCATTGTCCTAGGTTCGTC
CTCTATCACGCTGCTGGTTCAGAACGAGTCGAGAATACCCGCGAGGGCCA
TCATGTGGATCTTGCCGCTCATGCTCTTGGTAGGGGGTAGCCTAACCCTG
GGCGAGAAGGTCTTTAAGGAGTACCGAGCCCGCAAGCAGCAAGCTGCAGC
GGAGGCACGAGCCCTGTCGGCGCCTGAGCAAGGCGAGGGTCGCATCACTG
AAGCATCCACTACACAGACTGGCACCGCCGCCACTACCAATACGGAGGAC
GCTAGCAGCATGGGCTCGACAGCGGTAACGTCCGACACGTACGATCGGGT
ACCCGTGTCCAAGTGGTCGAGCATGGTCGCCTTCCTGCTCATCGTCGGCT
TTCTCCTATACCTTCTGGCGATGCACGTGGCAAAGCAGACCATGGGCGCG
CTCATGCACATCTTCAGCTCTTTCTTCATCGTGGGAATCACCATTTACGG
GGGAGGGCAGGTGATGTTGCCCCTGTTGGTGAGTGTGGCAGTAGACCCAG
GTTGGCTGTCCATGGACCAATTCATGGTGGGCTTTGCGGTTATCCAGATG
ATGCCCGGTCCACTTTCCAACCTGGCAGCTTACATTGGAGCCATCTACAT
GGGCGTGCCAGGGGCCGTAGTGGGCGTGATTGGCTTTTTCCTCCCCGGAA
TCCTCTTGGTTATTGCCTTGCTACCCCTCTGGGACAAAGTGCGCAAGGTT
TCGAACGTCCGCCCTTTCTTGGCGGGCGTCAATGCGATGGGCCTCGGCCT
CATCCTCGCCGTGGGCATTGCCCTCTACCTCAAGATGGTACGGAATCCTG
CGGCCGCCGTCGTAAACATCATCACGGCTTGCCTGGTGGGGTATCTAGGC
TATTCATCTCTGGTGGGCGTGCTCGTGGGTGCTCTTGTGGGCTTCTTGCT
AAGCCCCACGTGCCTTTCTTGGGGTCAGGAACCTTACCTCCTGCCCAAAA
GTTAAATCAAACTGAAGAGCGACGGAATAGGGACTGGGGGACAATGATGA
AAATAAGGATGAGCTGGTGGGCCTCAAAGATAAGTTTGCTCCGGGCCTGT
TGATAGTAACGATAGATAGTATAGCGTAAATTAGGGCAAAGATGGAAAGA
AAAAAACTATTAAAGGGAAGCCA
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protein sequence of NO01G05270.1

>NO01G05270.1-protein ID=NO01G05270.1-protein|Name=NO01G05270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MAASAEETSMAPLELGQDVEGGQLQQQQQQQQQQQQQQQQQQQQQQQQGK
ADGIEGKEELSHAGETRPVHYKLWELVRYILPAGCYAFGGPTVHLAVFHN
LFVTKLHWLNDQEFVDLLALGMTLPGPTSSEFCVAVGTYRAGVLGALVAF
LCFTLPSFIIMLLAGLGATHMDPNHIPDWMSGLAPAATALIFVAFANLGK
KIVGGSPLKASIVLGSSSITLLVQNESRIPARAIMWILPLMLLVGGSLTL
GEKVFKEYRARKQQAAAEARALSAPEQGEGRITEASTTQTGTAATTNTED
ASSMGSTAVTSDTYDRVPVSKWSSMVAFLLIVGFLLYLLAMHVAKQTMGA
LMHIFSSFFIVGITIYGGGQVMLPLLVSVAVDPGWLSMDQFMVGFAVIQM
MPGPLSNLAAYIGAIYMGVPGAVVGVIGFFLPGILLVIALLPLWDKVRKV
SNVRPFLAGVNAMGLGLILAVGIALYLKMVRNPAAAVVNIITACLVGYLG
YSSLVGVLVGALVGFLLSPTCLSWGQEPYLLPKS*
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mRNA from alignment at chr1:1405753..1407873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05270.1 ID=NO01G05270.1|Name=NO01G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp|location=Sequence derived from alignment at chr1:1405753..1407873+ (Nannochloropsis oceanica)
ATGGCGGCCAGCGCGGAGGAAACGAGCATGGCGCCCCTGGAGCTAGGGCA
GGATGTAGAAGGAGGCCAGCTTCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAGCAGCAGCAACAGGGCAAG
GCAGACGGCATTGAAGGCAAAGAGTAAGGGACGTGGAAAGGGCTCCAACA
GGGCATCTATCCAGCCGATGTTGACTGCGGATGGTCCTATACTCCTACTT
ATTCTATGTTCACATACGTTTTCCCCAGGGAGTTATCACATGCCGGTGAG
ACTCGCCCGGTGCATTACAAGTTGTGGGAGTTGGTCCGCTACATCCTGCC
CGCAGGGTGCTACGCTTTTGGGGGACCCACGGTCCATCTGGCTGTCTTTC
ACAATTTGTTCGTGACCAAGCTGCATTGGCTGAATGATCAAGTATGTATG
CTTTGATGATCAATAAACACCGAATCGCTAAAGGTGCTATCCTGAAATGC
AAGAATCTCACTCTGTATCCTTCTCCTTTTTTCACCTCCCTTTTCCGCTC
TTAGGAGTTTGTAGATCTCCTGGCCCTAGGTATGACTTTGCCTGGCCCTA
CAAGCTCCGAGTTCTGCGTTGCTGGTAAGTTGTCAGAAGAGTTTAGGAGG
CGCGTAAAAGAGAAGATGGAAGGAGCCCTGGAAATTCCTTCACCCACGCA
GCGCTTTCCACGAGACACATATTATTCAGCCTCCTCTCCCTCTCTAAAAA
ACAGTTGGAACCTACCGCGCTGGAGTGCTAGGTGCCCTGGTGGCTTTTTT
GTGCTTCACCTTGCCCAGCTTTATTATAATGCTTCTCGCAGGCTTGGGTG
CCACACATATGGATCCAAATCACATCCCAGACTGGATGTCGGGTCTAGCT
CCCGCAGCCACAGCCCTCATCTTTGTGGCCTTTGCTAACCTAGGCAAGAA
GATCGTGGGTGGCTCACCATTGAAGGCAAGCATTGTCCTAGGTTCGTCCT
CTATCACGCTGCTGGTTCAGAACGAGTCGAGAATACCCGCGAGGGCCATC
ATGTGGATCTTGCCGCTCATGCTCTTGGTAGGGGGTAGCCTAACCCTGGG
CGAGAAGGTCTTTAAGGAGTACCGAGCCCGCAAGCAGCAAGCTGCAGCGG
AGGCACGAGCCCTGTCGGCGCCTGAGCAAGGCGAGGGTCGCATCACTGAA
GCATCCACTACACAGACTGGCACCGCCGCCACTACCAATACGGAGGACGC
TAGCAGCATGGGCTCGACAGCGGTAACGTCCGACACGTACGATCGGGTAC
CCGTGTCCAAGTGGTCGAGCATGGTCGCCTTCCTGCTCATCGTCGGCTTT
CTCCTATACCTTCTGGCGATGCACGTGGCAAAGCAGACCATGGGCGCGCT
CATGCACATCTTCAGCTCTTTCTTCATCGTGGGAATCACCATTTACGGGG
GAGGGCAGGTGATGTTGCCCCTGTTGGTGAGTGTGGCAGTAGACCCAGGT
TGGCTGTCCATGGACCAATTCATGGTGGGCTTTGCGGTTATCCAGATGAT
GCCCGGTCCACTTTCCAACCTGGCAGCTTACATTGGAGCCATCTACATGG
GCGTGCCAGGGGCCGTAGTGGGCGTGATTGGCTTTTTCCTCCCCGGAATC
CTCTTGGTTATTGCCTTGCTACCCCTCTGGGACAAAGTGCGCAAGGTTTC
GAACGTCCGCCCTTTCTTGGCGGGCGTCAATGCGATGGGCCTCGGCCTCA
TCCTCGCCGTGGGCATTGCCCTCTACCTCAAGATGGTACGGAATCCTGCG
GCCGCCGTCGTAAACATCATCACGGCTTGCCTGGTGGGGTATCTAGGCTA
TTCATCTCTGGTGGGCGTGCTCGTGGGTGCTCTTGTGGGCTTCTTGCTAA
GCCCCACGTGCCTTTCTTGGGGTCAGGAACCTTACCTCCTGCCCAAAAGT
TAAATCAAACTGAAGAGCGACGGAATAGGGACTGGGGGACAATGATGAAA
ATAAGGATGAGCTGGTGGGCCTCAAAGATAAGTTTGCTCCGGGCCTGTTG
ATAGTAACGATAGATAGTATAGCGTAAATTAGGGCAAAGATGGAAAGAAA
AAAACTATTAAAGGGAAGCCA
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Coding sequence (CDS) from alignment at chr1:1405753..1407873+

>NO01G05270.1 ID=NO01G05270.1|Name=NO01G05270.1|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at chr1:1405753..1407873+ (Nannochloropsis oceanica)
ATGGCGGCCAGCGCGGAGGAAACGAGCATGGCGCCCCTGGAGCTAGGGCA
GGATGTAGAAGGAGGCCAGCTTCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAGCAGCAGCAACAGGGCAAG
GCAGACGGCATTGAAGGCAAAGAGGAGTTATCACATGCCGGTGAGACTCG
CCCGGTGCATTACAAGTTGTGGGAGTTGGTCCGCTACATCCTGCCCGCAG
GGTGCTACGCTTTTGGGGGACCCACGGTCCATCTGGCTGTCTTTCACAAT
TTGTTCGTGACCAAGCTGCATTGGCTGAATGATCAAGAGTTTGTAGATCT
CCTGGCCCTAGGTATGACTTTGCCTGGCCCTACAAGCTCCGAGTTCTGCG
TTGCTGTTGGAACCTACCGCGCTGGAGTGCTAGGTGCCCTGGTGGCTTTT
TTGTGCTTCACCTTGCCCAGCTTTATTATAATGCTTCTCGCAGGCTTGGG
TGCCACACATATGGATCCAAATCACATCCCAGACTGGATGTCGGGTCTAG
CTCCCGCAGCCACAGCCCTCATCTTTGTGGCCTTTGCTAACCTAGGCAAG
AAGATCGTGGGTGGCTCACCATTGAAGGCAAGCATTGTCCTAGGTTCGTC
CTCTATCACGCTGCTGGTTCAGAACGAGTCGAGAATACCCGCGAGGGCCA
TCATGTGGATCTTGCCGCTCATGCTCTTGGTAGGGGGTAGCCTAACCCTG
GGCGAGAAGGTCTTTAAGGAGTACCGAGCCCGCAAGCAGCAAGCTGCAGC
GGAGGCACGAGCCCTGTCGGCGCCTGAGCAAGGCGAGGGTCGCATCACTG
AAGCATCCACTACACAGACTGGCACCGCCGCCACTACCAATACGGAGGAC
GCTAGCAGCATGGGCTCGACAGCGGTAACGTCCGACACGTACGATCGGGT
ACCCGTGTCCAAGTGGTCGAGCATGGTCGCCTTCCTGCTCATCGTCGGCT
TTCTCCTATACCTTCTGGCGATGCACGTGGCAAAGCAGACCATGGGCGCG
CTCATGCACATCTTCAGCTCTTTCTTCATCGTGGGAATCACCATTTACGG
GGGAGGGCAGGTGATGTTGCCCCTGTTGGTGAGTGTGGCAGTAGACCCAG
GTTGGCTGTCCATGGACCAATTCATGGTGGGCTTTGCGGTTATCCAGATG
ATGCCCGGTCCACTTTCCAACCTGGCAGCTTACATTGGAGCCATCTACAT
GGGCGTGCCAGGGGCCGTAGTGGGCGTGATTGGCTTTTTCCTCCCCGGAA
TCCTCTTGGTTATTGCCTTGCTACCCCTCTGGGACAAAGTGCGCAAGGTT
TCGAACGTCCGCCCTTTCTTGGCGGGCGTCAATGCGATGGGCCTCGGCCT
CATCCTCGCCGTGGGCATTGCCCTCTACCTCAAGATGGTACGGAATCCTG
CGGCCGCCGTCGTAAACATCATCACGGCTTGCCTGGTGGGGTATCTAGGC
TATTCATCTCTGGTGGGCGTGCTCGTGGGTGCTCTTGTGGGCTTCTTGCT
AAGCCCCACGTGCCTTTCTTGGGGTCAGGAACCTTACCTCCTGCCCAAAA
GTTAA
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Synonyms
Publications