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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1397558..1400298 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05240.1 vs.
Match: EWM29452.1 (Carotenoid oxygenase [Nannochloropsis gaditana]) HSP 1 Score: 767.3 bits (1980), Expect = 4.100e-218 Identity = 394/626 (62.94%), Postives = 466/626 (74.44%), Query Frame = 0
Query: 84 STVVAA--ASQPVPP-DLVDALAERPWRTGLEPAEDVDMLEVPADCIEGTIPPDLVGTLFRNGAGRIRVGSSPSTRYNHWFDGDGMVAAATFTPDGRCYFRQKYLRGAKFLAQEKAGEERLGSRGVWTQKKGEGERGNKGGKGRWWQNIGRLPGNPLNTNVLVMEGGKEGGVESKRVWALCEGGPPFEFDPVTLDVQAEPELFVGPHGQLSSFFSAHPKQDPDTGTLYNVGMLLGPSLALNLIKISPASSSSTSSPFSSSSSSSSSSPFLLRQHSYSLPAIPVLHDFVLAGRFLVIFLSPYQARPPSLLRSLLGLASLGEMYRWEKGKEGVAWVFEKETLRRVAEVAIDPPFSNYHFVNAWERGKGGKEGERARKGDQGVVLERQGRMKGGEEVVEVEVVVAQHRSGREEVEKLFRDMYHADFSQGLECETWRYVIRFGYSSSSSSSSSTSRGERGGTRQGRREDG----TRVGELIEASPLPLAASSYGYELPTINPLTVGKEGRYAYVNALVREEGFIDTVAKLDLREGGRMEPHTWSVPSGCFAGEAVFIPK-GRKEGGREGEAEEDEGYLVFYVFDSRRQASDLVVIDAQKMENPPLAVVHLPVRVPYSYHGAWTTDTFGVG 702
S+++A+ ++ P PP D+ +AL ERPWRTGLEPAEDVD++E+ A CIEGT+P DLVGTL+RNGAGRIRVG+SP+ RY+HWFDGDGMV+A TFT DGRC FRQ+YL+G KFLAQ+ A E G RGVWTQ+ G +G+WW+N+GR+P NPLNTNVLV+EG KEGG + R ALCEGG PFEFDPV+L V+ EPE F GPHG+LSSFFSAHPK DPDTG LYN GMLLGPSLALN+ +I SS SSS S+ P LLRQ S+ L IP +HDFVLAGRFL+IF SP+QA P +L R+LLGL+SLG Y W+ G + AWV EK TLRRVAEV IDPPFSNYHFVNAWE+ G EG + GD VEVEV+VAQHRS RE+VE+ FRDMY ADF+ LECETWRYV+RF Y GE GGT + +DG R ++EA P+PLAASSYGYELPT+NP TVGK+GR+AYVNALVREEGF+D+VAKL L GGRME H +P GCFAGEAVF+P+ GR + G EED+GYL+FYV D+RRQASDLV++DAQ+ME PPLAV+HLPVRVPYSYHG WTT TFG+G
Sbjct: 108 SSILASTLSTAPSPPEDIAEALKERPWRTGLEPAEDVDLIELSAACIEGTVPSDLVGTLYRNGAGRIRVGASPTLRYSHWFDGDGMVSAFTFTADGRCIFRQRYLQGKKFLAQKNAKEGAWGGRGVWTQRGGR--------EGKWWENMGRIPDNPLNTNVLVLEGAKEGG--TTRTLALCEGGLPFEFDPVSLAVRREPEDFAGPHGRLSSFFSAHPKVDPDTGILYNFGMLLGPSLALNIFEI------------SSPSSSPSAQPVLLRQRSFPLAFIPTVHDFVLAGRFLIIFFSPFQAPPSALARALLGLSSLGGQYVWKNGGKTQAWVVEKSTLRRVAEVDIDPPFSNYHFVNAWEKEGGNGEGRKTGDGD-----------------VEVEVLVAQHRSPREKVEEQFRDMYRADFTPELECETWRYVLRFAYEEGGEEG-----GEEGGTEDPQEQDGRDSSVRRARVVEAGPMPLAASSYGYELPTLNPCTVGKKGRFAYVNALVREEGFVDSVAKLHLDAGGRMEVHRSCLPPGCFAGEAVFVPRGGRDKEEGTGRQEEDDGYLLFYVLDTRRQASDLVILDAQRMERPPLAVIHLPVRVPYSYHGVWTTATFGLG 689
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05240.1 ID=NO01G05240.1|Name=NO01G05240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp ATGCCACAAGCGCTGCTCTCCAAGGCGCGCCGGGGAAGAGCTCGGGCGCC CTGCTGGCGCTGGGATGCTCTCCTCCTCCTCCTCCTTCTCAACCTCCTCC TTCTTCTCCTCGACGTCGTCCACACGGCTGCGTTTTTGGTGCCCTTGCGC ACGAAGTCTATCCGATTCACTGCCACCATCAGCACCATGAGATGGCCTCC TACACCTTTTCGATGTATGTCGCTGCACGATTTGCAGCAGCCGACGTGTT CTACAGTAGTAGCCGCCGCCTCTCAGCCCGTTCCGCCGGATTTGGTCGAT GCCCTTGCAGAGCGGCCTTGGCGCACGGGCCTCGAGCCGGCAGAGGACGT GGACATGCTCGAGGTGCCCGCCGACTGTATTGAGGGTACCATCCCGCCCG ACTTAGTAGGCACCCTGTTCCGAAACGGTGCGGGGCGCATTCGTGTGGGC TCGTCCCCCTCCACCAGATATAACCACTGGTTCGACGGCGATGGAATGGT GGCCGCCGCGACGTTTACCCCGGACGGTCGTTGTTATTTCCGTCAAAAAT ACTTGCGGGGGGCGAAGTTTCTGGCGCAGGAGAAAGCGGGGGAGGAGAGA TTGGGCAGTCGAGGAGTGTGGACTCAGAAGAAGGGGGAGGGGGAGAGAGG GAATAAGGGAGGGAAGGGAAGGTGGTGGCAGAACATCGGACGTTTGCCCG GAAACCCTCTGAATACGAATGTGTTGGTGATGGAGGGAGGGAAGGAGGGA GGGGTGGAAAGCAAGAGGGTGTGGGCATTGTGCGAGGGCGGGCCGCCGTT TGAATTTGACCCGGTGACATTGGACGTGCAGGCAGAGCCAGAATTGTTTG TCGGTCCCCACGGGCAACTCTCCTCCTTCTTCTCCGCCCACCCCAAACAA GACCCCGATACTGGCACGCTCTATAATGTTGGCATGCTCCTTGGTCCCTC CCTTGCCCTGAACCTTATCAAGATATCTCCTGCTTCCTCGTCCTCGACCT CCTCCCCCTTCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTTTCTT CTTCGGCAGCATTCCTACTCTCTTCCTGCCATCCCTGTTCTCCACGACTT TGTCCTTGCCGGCCGTTTCTTGGTCATCTTCCTCTCCCCTTATCAAGCCC GCCCTCCCTCCCTCCTTCGCTCCCTCCTTGGCCTGGCCTCGCTCGGGGAG ATGTACAGGTGGGAGAAAGGGAAGGAGGGCGTGGCATGGGTATTCGAAAA AGAGACCTTGCGACGGGTGGCTGAAGTAGCCATCGACCCTCCCTTCTCCA ACTACCATTTTGTGAATGCCTGGGAGAGGGGAAAGGGAGGCAAGGAAGGG GAAAGGGCGAGGAAGGGAGATCAAGGTGTGGTTTTGGAGAGGCAGGGAAG GATGAAGGGAGGAGAGGAGGTTGTAGAGGTGGAGGTGGTGGTGGCACAGC ACCGGTCGGGGAGGGAGGAGGTAGAGAAGCTATTTCGTGATATGTACCAT GCGGATTTCTCGCAGGGATTGGAGTGTGAGACATGGCGGTATGTGATTAG ATTTGGCTATAGCAGCAGCAGCAGTAGCAGCAGCAGCACTAGCCGTGGTG AGAGAGGTGGTACGCGGCAGGGAAGGAGGGAGGACGGGACGCGGGTTGGG GAGTTAATAGAAGCGAGCCCTTTGCCGCTGGCGGCCTCTTCCTACGGGTA CGAGCTTCCAACCATCAACCCTCTGACCGTGGGAAAGGAGGGGAGGTATG CCTATGTGAATGCGTTGGTCCGCGAGGAAGGATTTATAGACACGGTGGCG AAATTGGATTTGAGGGAGGGAGGGAGGATGGAGCCTCATACTTGGAGTGT CCCTTCTGGTTGCTTCGCGGGGGAGGCAGTGTTTATCCCCAAGGGGAGGA AGGAGGGAGGGAGGGAGGGGGAGGCAGAGGAGGATGAAGGGTATTTGGTT TTTTATGTGTTTGATTCGCGGAGGCAAGCGTCGGATTTGGTGGTTATTGA TGCGCAGAAAATGGAGAATCCGCCATTGGCTGTTGTGCATTTGCCCGTGC GTGTGCCATATTCTTACCATGGAGCATGGACGACAGATACGTTCGGGGTG GGGGGAAGGGCGGGAGGGAGGGCGTGAAAGGTGGTTTGCGCAGAGGAGAC CGAAGGACCTGCCCTTGGCTCTGGTGCAATTCAACTTGCCTGTCTCTCTC CTTTGTACTGTGTGGACGTGGTCGGAAATAGCAGGGTGACGCCGGAAAGC TCGTGGATCTTGCACTTGCGCTGCAGTGCCTATTCAGGCACTTGCCGACG GGGGGAGGATGCGTCGTGAGAGAGGTGGGAAGAATGTAAAGACGGAGAAG CATGACAAATAAAATCCGAAAGAAAAATTGGATGGCAAAGCGCAAAAGAA AAACTGTACAAATCGAAATAGTGTGGAAAAAGGAATCAACTAAAAAAGCC CAAA back to topprotein sequence of NO01G05240.1 >NO01G05240.1-protein ID=NO01G05240.1-protein|Name=NO01G05240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=709bp MPQALLSKARRGRARAPCWRWDALLLLLLLNLLLLLLDVVHTAAFLVPLR TKSIRFTATISTMRWPPTPFRCMSLHDLQQPTCSTVVAAASQPVPPDLVD ALAERPWRTGLEPAEDVDMLEVPADCIEGTIPPDLVGTLFRNGAGRIRVG SSPSTRYNHWFDGDGMVAAATFTPDGRCYFRQKYLRGAKFLAQEKAGEER LGSRGVWTQKKGEGERGNKGGKGRWWQNIGRLPGNPLNTNVLVMEGGKEG GVESKRVWALCEGGPPFEFDPVTLDVQAEPELFVGPHGQLSSFFSAHPKQ DPDTGTLYNVGMLLGPSLALNLIKISPASSSSTSSPFSSSSSSSSSSPFL LRQHSYSLPAIPVLHDFVLAGRFLVIFLSPYQARPPSLLRSLLGLASLGE MYRWEKGKEGVAWVFEKETLRRVAEVAIDPPFSNYHFVNAWERGKGGKEG ERARKGDQGVVLERQGRMKGGEEVVEVEVVVAQHRSGREEVEKLFRDMYH ADFSQGLECETWRYVIRFGYSSSSSSSSSTSRGERGGTRQGRREDGTRVG ELIEASPLPLAASSYGYELPTINPLTVGKEGRYAYVNALVREEGFIDTVA KLDLREGGRMEPHTWSVPSGCFAGEAVFIPKGRKEGGREGEAEEDEGYLV FYVFDSRRQASDLVVIDAQKMENPPLAVVHLPVRVPYSYHGAWTTDTFGV GGRAGGRA* back to topmRNA from alignment at chr1:1397558..1400298+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05240.1 ID=NO01G05240.1|Name=NO01G05240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp|location=Sequence derived from alignment at chr1:1397558..1400298+ (Nannochloropsis oceanica) ATGCCACAAGCGCTGCTCTCCAAGGCGCGCCGGGGAAGAGCTCGGGCGCC
CTGCTGGCGCTGGGATGCTCTCCTCCTCCTCCTCCTTCTCAACCTCCTCC
TTCTTCTCCTCGACGTCGTCCACACGGCTGCGTTTTTGGTGCCCTTGCGC
ACGAAGTCTATCCGATTCACTGCCACCATCAGCACCATGAGATGGCCTCC
TACACCTTTTCGATGTATGTCGCTGCACGATTTGCAGCAGCCGACGTGTT
CTACAGTAGTAGCCGCCGCCTCTCAGCCCGTTCCGCCGGATTTGGTCGAT
GCCCTTGCAGAGCGGCCTTGGCGCACGGGCCTCGAGCCGGCAGAGGACGT
GGACATGCTCGAGGTGCCCGCCGACTGTATTGAGGTAAGGATAGGACTGG
TGAGCTGGCAGATGCTTCCTTCCCCCCACCCTACCTCCCCTCCCCCTCAC
CTCTCACTATCCAAGTTCCTTCTCTCCTGACCACACATTTATCCTATTCG
TCACTTCCTTCATCCAGGGTACCATCCCGCCCGACTTAGTAGGCACCCTG
TTCCGAAACGGTGCGGGGCGCATTCGTGTGGGCTCGTCCCCCTCCACCAG
ATATAACCACTGGTTCGACGGCGATGGAATGGTGGCCGCCGCGACGTTTA
CCCCGGACGGTCGTTGTTATTTCCGTCAAAAATACTTGCGGGGGGCGAAG
TTTCTGGCGCAGGAGAAAGCGGGGGAGGAGAGATTGGGCAGTCGAGGAGT
GTGGACTCAGAAGAAGGGGGAGGGGGAGAGAGGGAATAAGGGAGGGAAGG
GAAGGTGGTGGCAGAACATCGGACGTTTGCCCGGAAACCCTCTGAATACG
AATGTGTTGGTGATGGAGGGAGGGAAGGAGGGAGGGGTGGAAAGCAAGAG
GGTGTGGGCATTGTGCGAGGGCGGGCCGCCGTTTGAATTTGACCCGGTGA
CATTGGACGTGCAGGCAGAGCCAGAATTGTTTGGTAAGCGAGGAAGAGGA
GGGAGGGAAGGAGGGAGGGGAGGAGGAGCGAGATGGCTGGGCCAGAGAGG
GGGTTTACTGATTATGTCATCCCCACGATCTTCTCCTCCTACGTCGCATA
TATGGTTACATGCCCAACGCCCTTCTATCCTCCACAGTCGGTCCCCACGG
GCAACTCTCCTCCTTCTTCTCCGCCCACCCCAAACAAGACCCCGATACTG
GCACGCTCTATAATGTTGGCATGCTCCTTGGTCCCTCCCTTGCCCTGAAC
CTTATCAAGATATCTCCTGCTTCCTCGTCCTCGACCTCCTCCCCCTTCTC
TTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTTTCTTCTTCGGCAGCATT
CCTACTCTCTTCCTGCCATCCCTGTTCTCCACGACTTTGTCCTTGCCGGC
CGTTTCTTGGTCATCTTCCTCTCCCCTTATCAAGCCCGCCCTCCCTCCCT
CCTTCGCTCCCTCCTTGGCCTGGCCTCGCTCGGGGAGATGTACAGGTGGG
AGAAAGGGAAGGAGGGCGTGGCATGGGTATTCGAAAAAGAGACCTTGCGA
CGGGTGGCTGAAGTAGCCATCGACCCTCCCTTCTCCAACTACCATTTTGT
GAATGCCTGGGAGAGGGGAAAGGGAGGCAAGGAAGGGGAAAGGGCGAGGA
AGGGAGATCAAGGTGTGGTTTTGGAGAGGCAGGGAAGGATGAAGGGAGGA
GAGGAGGTTGTAGAGGTGGAGGTGGTGGTGGCACAGCACCGGTCGGGGAG
GGAGGAGGTAGAGAAGCTATTTCGTGATATGTACCATGCGGATTTCTCGC
AGGGATTGGAGTGTGAGACATGGCGGTATGTGATTAGATTTGGCTATAGC
AGCAGCAGCAGTAGCAGCAGCAGCACTAGCCGTGGTGAGAGAGGTGGTAC
GCGGCAGGGAAGGAGGGAGGACGGGACGCGGGTTGGGGAGTTAATAGAAG
CGAGCCCTTTGCCGCTGGCGGCCTCTTCCTACGGGTACGAGCTTCCAACC
ATCAACCCTCTGACCGTGGGAAAGGAGGGGAGGTATGCCTATGTGAATGC
GTTGGTCCGCGAGGAAGGATTTATAGACACGGTGGCGAAATTGGATTTGA
GGGAGGGAGGGAGGATGGAGCCTCATACTTGGAGTGTCCCTTCTGGTTGC
TTCGCGGGGGAGGCAGTGTTTATCCCCAAGGGGAGGAAGGAGGGAGGGAG
GGAGGGGGAGGCAGAGGAGGATGAAGGGTATTTGGTTTTTTATGTGTTTG
ATTCGCGGAGGCAAGCGTCGGATTTGGTGGTTATTGATGCGCAGAAAATG
GAGAATCCGCCATTGGCTGTTGTGCATTTGCCCGTGCGTGTGCCATATTC
TTACCATGGAGCATGGACGACAGATACGTTCGGGGTGGGGGGAAGGGCGG
GAGGGAGGGCGTGAAAGGTGGTTTGCGCAGAGGAGACCGAAGGACCTGCC
CTTGGCTCTGGTGCAATTCAACTTGCCTGTCTCTCTCCTTTGTACTGTGT
GGACGTGGTCGGAAATAGCAGGGTGACGCCGGAAAGCTCGTGGATCTTGC
ACTTGCGCTGCAGTGCCTATTCAGGCACTTGCCGACGGGGGGAGGATGCG
TCGTGAGAGAGGTGGGAAGAATGTAAAGACGGAGAAGCATGACAAATAAA
ATCCGAAAGAAAAATTGGATGGCAAAGCGCAAAAGAAAAACTGTACAAAT
CGAAATAGTGTGGAAAAAGGAATCAACTAAAAAAGCCCAAA back to topCoding sequence (CDS) from alignment at chr1:1397558..1400298+ >NO01G05240.1 ID=NO01G05240.1|Name=NO01G05240.1|organism=Nannochloropsis oceanica|type=CDS|length=2127bp|location=Sequence derived from alignment at chr1:1397558..1400298+ (Nannochloropsis oceanica) ATGCCACAAGCGCTGCTCTCCAAGGCGCGCCGGGGAAGAGCTCGGGCGCC CTGCTGGCGCTGGGATGCTCTCCTCCTCCTCCTCCTTCTCAACCTCCTCC TTCTTCTCCTCGACGTCGTCCACACGGCTGCGTTTTTGGTGCCCTTGCGC ACGAAGTCTATCCGATTCACTGCCACCATCAGCACCATGAGATGGCCTCC TACACCTTTTCGATGTATGTCGCTGCACGATTTGCAGCAGCCGACGTGTT CTACAGTAGTAGCCGCCGCCTCTCAGCCCGTTCCGCCGGATTTGGTCGAT GCCCTTGCAGAGCGGCCTTGGCGCACGGGCCTCGAGCCGGCAGAGGACGT GGACATGCTCGAGGTGCCCGCCGACTGTATTGAGGGTACCATCCCGCCCG ACTTAGTAGGCACCCTGTTCCGAAACGGTGCGGGGCGCATTCGTGTGGGC TCGTCCCCCTCCACCAGATATAACCACTGGTTCGACGGCGATGGAATGGT GGCCGCCGCGACGTTTACCCCGGACGGTCGTTGTTATTTCCGTCAAAAAT ACTTGCGGGGGGCGAAGTTTCTGGCGCAGGAGAAAGCGGGGGAGGAGAGA TTGGGCAGTCGAGGAGTGTGGACTCAGAAGAAGGGGGAGGGGGAGAGAGG GAATAAGGGAGGGAAGGGAAGGTGGTGGCAGAACATCGGACGTTTGCCCG GAAACCCTCTGAATACGAATGTGTTGGTGATGGAGGGAGGGAAGGAGGGA GGGGTGGAAAGCAAGAGGGTGTGGGCATTGTGCGAGGGCGGGCCGCCGTT TGAATTTGACCCGGTGACATTGGACGTGCAGGCAGAGCCAGAATTGTTTG TCGGTCCCCACGGGCAACTCTCCTCCTTCTTCTCCGCCCACCCCAAACAA GACCCCGATACTGGCACGCTCTATAATGTTGGCATGCTCCTTGGTCCCTC CCTTGCCCTGAACCTTATCAAGATATCTCCTGCTTCCTCGTCCTCGACCT CCTCCCCCTTCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTTTCTT CTTCGGCAGCATTCCTACTCTCTTCCTGCCATCCCTGTTCTCCACGACTT TGTCCTTGCCGGCCGTTTCTTGGTCATCTTCCTCTCCCCTTATCAAGCCC GCCCTCCCTCCCTCCTTCGCTCCCTCCTTGGCCTGGCCTCGCTCGGGGAG ATGTACAGGTGGGAGAAAGGGAAGGAGGGCGTGGCATGGGTATTCGAAAA AGAGACCTTGCGACGGGTGGCTGAAGTAGCCATCGACCCTCCCTTCTCCA ACTACCATTTTGTGAATGCCTGGGAGAGGGGAAAGGGAGGCAAGGAAGGG GAAAGGGCGAGGAAGGGAGATCAAGGTGTGGTTTTGGAGAGGCAGGGAAG GATGAAGGGAGGAGAGGAGGTTGTAGAGGTGGAGGTGGTGGTGGCACAGC ACCGGTCGGGGAGGGAGGAGGTAGAGAAGCTATTTCGTGATATGTACCAT GCGGATTTCTCGCAGGGATTGGAGTGTGAGACATGGCGGTATGTGATTAG ATTTGGCTATAGCAGCAGCAGCAGTAGCAGCAGCAGCACTAGCCGTGGTG AGAGAGGTGGTACGCGGCAGGGAAGGAGGGAGGACGGGACGCGGGTTGGG GAGTTAATAGAAGCGAGCCCTTTGCCGCTGGCGGCCTCTTCCTACGGGTA CGAGCTTCCAACCATCAACCCTCTGACCGTGGGAAAGGAGGGGAGGTATG CCTATGTGAATGCGTTGGTCCGCGAGGAAGGATTTATAGACACGGTGGCG AAATTGGATTTGAGGGAGGGAGGGAGGATGGAGCCTCATACTTGGAGTGT CCCTTCTGGTTGCTTCGCGGGGGAGGCAGTGTTTATCCCCAAGGGGAGGA AGGAGGGAGGGAGGGAGGGGGAGGCAGAGGAGGATGAAGGGTATTTGGTT TTTTATGTGTTTGATTCGCGGAGGCAAGCGTCGGATTTGGTGGTTATTGA TGCGCAGAAAATGGAGAATCCGCCATTGGCTGTTGTGCATTTGCCCGTGC GTGTGCCATATTCTTACCATGGAGCATGGACGACAGATACGTTCGGGGTG GGGGGAAGGGCGGGAGGGAGGGCGTGA back to top
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