NO01G05200.1, NO01G05200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05200.1
Unique NameNO01G05200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr1:1380548..1383657 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1380548..1383657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05200.1 vs.
Match: EWM29440.1 (d-lactate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 489.2 bits (1258), Expect = 1.100e-134
Identity = 240/347 (69.16%), Postives = 294/347 (84.73%), Query Frame = 0 
Query:    1 MKVAIFSSQDYDKKFLTLANEAQAPEYRHSLTFLEARLDGITATLAEHHDVICAFVNDEVSSAVLDKCKEQNIGLIALRSAGCNNVDLAYLAKKELSLVHVPAYSPEAVAEHALALLLTLSRKIHKIYNRVRDGNFSLEGVTPGFVLHGKTVGVLGTGKIGECFIRIMMGLGCDVLGYDVRENPALQALQQQCRGDGKGSFEYKPLDEVLQASDIISLHLPLLPKTKGLINHDSLTKMKKGVVIINTSRGGLVDSKAVIDSLKKKHIGGIGLDTYEEEEEFFYRNLSQDVVGDDQLIRLMTFPNVIITPHQGFYTCEALTAIAESTIQSITEYARGTEPGPSIIYKG 348
            MKV +FS++DYDK+ L  AN+  A   RHSLTFLEAR++  TA+LAE +DV+C FVNDE++S+V+D  K+  + LIALRSAGCNNVDL ++ K  LS+VHVPAYSP+AVAEHALALLLTL+RK HK+YNRVR+GNF LEGVTPG VL GKTVGVLGTG IGECF+RIM+GLGC VLGYDV E+ +L ALQ++ + +G GSFEY+ LDEVLQASD+ISLH+PL P T+G+I   ++ KMK+ V++INTSRGGLVD+KAVI +LKKKHIG +GLDTYEEE +FFYR+LSQ+VV DDQLIRLMTFPNV++TPHQGFYT EAL AIA STI SI+E++R T+P  SIIY+G
Sbjct:    1 MKVVVFSTKDYDKESLIAANDDLATADRHSLTFLEARVEETTASLAEGYDVVCCFVNDEITSSVIDTWKKSGVKLIALRSAGCNNVDLDHVVKCGLSVVHVPAYSPQAVAEHALALLLTLNRKTHKVYNRVREGNFCLEGVTPGIVLAGKTVGVLGTGNIGECFVRIMLGLGCHVLGYDVVESHSLVALQEKGKIEGGGSFEYRSLDEVLQASDVISLHMPLTPDTQGIIGPRNIKKMKENVILINTSRGGLVDTKAVITALKKKHIGALGLDTYEEEGDFFYRDLSQEVVSDDQLIRLMTFPNVLVTPHQGFYTREALLAIASSTITSISEFSRETQPASSIIYRG 347
The following BLAST results are available for this feature:
BLAST of NO01G05200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29440.11.100e-13469.16d-lactate dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05200NO01G05200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05200.1NO01G05200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05200.1.cds1NO01G05200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05200.1.cds2NO01G05200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05200.1.cds3NO01G05200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05200.1.cds4NO01G05200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05200.1.cds5NO01G05200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05200.1.cds6NO01G05200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05200.1.cds7NO01G05200.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05200.1.cds8NO01G05200.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05200.1 ID=NO01G05200.1|Name=NO01G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
CGATCCAGCAGACCTGCGGCGTACACCATGGCAAAGTCAGGGTTTAGCAA
AATAGACGGATCGCATCATGAATCATGATGGTGGCATGTGAATGAGTTTG
CCACCCATTCGGCGGGTGGCGGTTGGGACTTTTTTTTTCATTCTCTGGAC
CCAATGCCCCCCATTCCCTGCACTCACGACATAAAAGATGCAGAAATTGT
GGTTTATAACATTGCCTTGGTGAGTCACAGTGTTCACAGTTGCTTTGTTT
GATTTTGACTCTCATTTTTACCCGTCAAAGTGACCAAAGAACAAGTGCTG
CATGGCAAACTGGACGTCAATCGCTGGAGACTTGTCCCGGAAACAGCGAT
AGCCATCATGTTGTATTCTTGAATGGCCGGATGAAAAAGTCCTGACAATT
GGTAAGAAAGTGACAAACACTTCTGAAGAGCCACAGATGTTGAGACGGAA
TTCGAATTCGAAAGTCGATTGTATTTCCTGCCCGGCGCGCACTTGGGCCC
CCAGGCCGTGCTCGGCAGAATGCGATATGACATAACACACTTCATACCCT
TCCTGGACAGCTCCGTCTCGTTTCCCTTGCCAGCCAGAGTGTCCTGTTGC
CAAGATGAAGGTTGCCATTTTTAGCAGCCAGGACTACGATAAGAAGTTCT
TGACGCTCGCGAATGAGGCGCAAGCCCCCGAGTACAGGCACTCTCTTACC
TTTTTGGAAGCCCGCCTGGACGGCATCACCGCAACGCTTGCCGAGCATCA
CGACGTGATATGTGCCTTTGTCAATGACGAGGTGTCGTCTGCCGTGCTGG
ACAAGTGCAAGGAACAAAACATCGGGCTCATTGCTTTGCGGAGTGCCGGG
TGCAACAACGTGGACTTGGCATATCTGGCCAAGAAGGAACTCTCCCTGGT
TCACGTCCCCGCCTACTCCCCTGAGGCTGTGGCCGAGCATGCCTTGGCGC
TTTTGCTGACCCTCAGCCGCAAGATTCATAAGATCTATAACCGGGTGCGA
GACGGGAACTTCTCTTTGGAAGGTGTGACGCCTGGCTTTGTCCTTCACGG
CAAGACGGTGGGTGTTCTAGGCACGGGCAAGATTGGGGAGTGCTTCATCC
GCATCATGATGGGTCTCGGTTGTGACGTGTTGGGCTATGACGTGAGGGAG
AACCCGGCGCTCCAAGCCCTTCAACAGCAATGCCGTGGAGATGGTAAAGG
AAGCTTCGAATACAAGCCTTTGGATGAAGTATTGCAGGCCTCGGACATAA
TCTCCCTCCACCTTCCCTTGTTGCCGAAGACAAAAGGGCTGATCAACCAT
GACAGCCTCACCAAGATGAAGAAGGGTGTGGTGATCATCAACACCTCCCG
AGGCGGATTGGTGGACAGTAAGGCTGTCATTGACTCTCTGAAAAAGAAGC
ATATAGGTGGCATAGGACTAGACACGTACGAGGAGGAGGAAGAATTCTTC
TACCGCAATCTTTCTCAGGACGTGGTAGGCGACGACCAGCTCATTCGCCT
CATGACCTTCCCAAATGTGATTATCACCCCGCACCAAGGTTTCTACACTT
GTGAGGCGCTGACGGCCATTGCCGAATCCACCATCCAGAGTATCACTGAG
TATGCACGAGGAACGGAGCCCGGTCCTTCCATTATCTATAAAGGCAAAGT
GATCAAGCACATGTAATACAAATGCTACAAGACTTCTCTTAAGGCTCCAG
GCGGAGGTACTGCCACGGCACGCGGGCAGTGGGTGGAAGCGGGCATTGGA
AATGCTCAAGTATTAGTGGAGGAGAAGGAAAGGAGCGTAGCAGATAATTA
TGAACCAACGTAAAAAGGGATATGAAAGAGAAGCAGAGGGCCAGAGGTGG
TGAGAAGGTCAGTGGGAGAGAATGGACACGTACAATTACGGTCATCACCA
ACATTAGAGGTGTAGGCGCATTAACGGCAGTACGAGGGCCACGAGCCCCG
CAGCAGAAGAAACAGCAAAAGCAGCGGCAGCAGTAACGACAGCGAAATGC
AGCAAATTAGATCATATTTCCGCATTCTAAACTAACCTGCATCATTGCTA
CTTAGAACAGATTAAAGGGAACATCATGTGTGATATCAAGGTAGGCGGAC
GAAGACGAGAGGGGCAGCTTGCTTACTCGCACAAATCTTGAGTGGGAAAT
AAAACGATTGTACTCCAAT
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protein sequence of NO01G05200.1

>NO01G05200.1-protein ID=NO01G05200.1-protein|Name=NO01G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MKVAIFSSQDYDKKFLTLANEAQAPEYRHSLTFLEARLDGITATLAEHHD
VICAFVNDEVSSAVLDKCKEQNIGLIALRSAGCNNVDLAYLAKKELSLVH
VPAYSPEAVAEHALALLLTLSRKIHKIYNRVRDGNFSLEGVTPGFVLHGK
TVGVLGTGKIGECFIRIMMGLGCDVLGYDVRENPALQALQQQCRGDGKGS
FEYKPLDEVLQASDIISLHLPLLPKTKGLINHDSLTKMKKGVVIINTSRG
GLVDSKAVIDSLKKKHIGGIGLDTYEEEEEFFYRNLSQDVVGDDQLIRLM
TFPNVIITPHQGFYTCEALTAIAESTIQSITEYARGTEPGPSIIYKGKVI
KHM*
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mRNA from alignment at chr1:1380548..1383657+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05200.1 ID=NO01G05200.1|Name=NO01G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3110bp|location=Sequence derived from alignment at chr1:1380548..1383657+ (Nannochloropsis oceanica)
CGATCCAGCAGACCTGCGGCGTACACCATGGCAAAGTCAGGGTTTAGCAA
AATAGACGGATCGCATCATGAATCATGATGGTGGCATGTGAATGAGTTTG
CCACCCATTCGGCGGGTGGCGGTTGGGACTTTTTTTTTCATTCTCTGGAC
CCAATGCCCCCCATTCCCTGCACTCACGACATAAAAGATGCAGAAATTGT
GGTTTATAACATTGCCTTGGTGAGTCACAGTGTTCACAGTTGCTTTGTTT
GATTTTGACTCTCATTTTTACCCGTCAAAGTGACCAAAGAACAAGTGCTG
CATGGCAAACTGGACGTCAATCGCTGGAGACTTGTCCCGGAAACAGCGAT
AGCCATCATGTTGTATTCTTGAATGGCCGGATGAAAAAGTCCTGACAATT
GGTAAGAAAGTGACAAACACTTCTGAAGAGCCACAGATGTTGAGACGGAA
TTCGAATTCGAAAGTCGATTGTATTTCCTGCCCGGCGCGCACTTGGGCCC
CCAGGCCGTGCTCGGCAGAATGCGATATGACATAACACACTTCATACCCT
TCCTGGACAGCTCCGTCTCGTTTCCCTTGCCAGCCAGAGTGTCCTGTTGC
CAAGATGAAGGTTGCCATTTTTAGCAGCCAGGACTACGATAAGAAGTTCT
TGACGCTCGCGAATGAGGCGCAAGCCCCCGAGTACAGGTATGTACTGCAT
GTATGTGACAGGAGTTGCTCGATCCCCCAAGTTTGCGTCTGTATGTCACA
TAGGAAGAAGAGGAAGAGGAAAGGAGGCGCGGAGTCAAAGGACGTGGCTC
GAGTGACAGACTCGCCTCATCCTCTTCCCTTCATCAATGTCAGGCACTCT
CTTACCTTTTTGGAAGCCCGCCTGGACGGCATCACCGCAACGCTTGCCGA
GCATCACGACGTGATATGTGCCTTTGTCAATGACGAGGTGTCGTCTGCCG
TGCTGGACAAGTGCAAGGAACAAAACATCGGGCTCATTGCTTTGCGGAGT
GCCGGGTGCAACAACGTGGACTTGGCATATCTGGCCAAGAAGGAACTCTC
CCTGGTTCACGTCCCCGCCTACTCCCCTGAGGCTGTGGCCGAGCATGCCT
TGGCGCTTTTGCTGACCCTCAGCCGCAAGATTCATAAGGTAACTTGAACG
GGCGAAAACATCACCATGTTGTGTTTTCCTGACTTCTCCATTCATTTCAT
TCCTCCTACACGGCTCCAGATCTATAACCGGGTGCGAGACGGGAACTTCT
CTTTGGAAGGTGTGACGCCTGGCTTTGTCCTTCACGGCAAGACGGTGGGT
GTTCTAGGCACGGGCAAGATTGGGGAGTGCTTCATCCGCATCATGATGGG
TCTCGGTTGTGACGTGTTGGGCTATGACGTGAGGGAGAACCCGGCGCTCC
AAGCCCTTCAACAGCAATGCCGTGGAGATGGTAAAGGAAGCTTCGAATAC
AAGCCTTTGGATGAAGTATTGCAGGTAAGGGCAATAGACCTGTGTGGATA
TATGTGCATGTGTGTGTCTTTTTTCATTCAGTAGATAACCGCCACTTGTA
CTCTCCTGTATCCTCCCTCCTGCGGACATGCACTATTACAGGCCTCGGAC
ATAATCTCCCTCCACCTTCCCTTGTTGCCGAAGACAAAAGGGCTGATCAA
CCATGACAGCCTCACCAAGATGAAGAAGGTAAGTACTCATATACATACAG
AAAGTGAGAGATGAAAAACACTGAATTGGAAAATGCACTCCTCTGTTTTT
AAGTCATTTGACTTCTCAAGCTCACGTACTCACCATTCGCACATGGACGT
CGATGCAGGGTGTGGTGATCATCAACACCTCCCGAGGCGGATTGGTGGAC
AGTAAGGCTGTCATTGACTCTCTGAAAAAGAAGCATATAGGTGGCATAGG
TATGTACGCCCCTCCTTTTTCTTTGTGTATTTGTAAAGGGTAGCAGGCAA
TCGTCTTTTTCTCCACTCCCAGTCGAAGTGAAAGAGCGGGTGAAGGGAGG
AGAGGGGGCATGTCATCCCACGATCTCACCGACGCATAAATCTACGTTTT
CTGGCACTTCACAGGACTAGACACGTACGAGGAGGAGGAAGAATTCTTCT
ACCGCAATCTTTCTCAGGACGTGGTAGGCGACGACCAGCTCATTCGCCTC
ATGTGAGTCTTAGGGGAGGAAGGGGGAGCAGGAAGAAAGGTAGAGTAGGG
AGGAATCCATGGAAACTCTCAATATTTACATTCTCTATTCTTCGTTTCTC
CACTTCTCTCACTCCTCTTCGGGCGTCTGTAGGACCTTCCCAAATGTGAT
TATCACCCCGCACCAAGGTTTCTACACTTGTGAGGCGCTGACGGCCATTG
CCGAATCCACCATCCAGAGTATCACTGAGTATGCACGGTATGTGTGCTGC
ATTCCTTGCTGTTTCTTGTTTTCTGAATTACTATATGTGTGATTTGGAAT
ATTTTTCTCTCCAACCCTTATTTCATCTCTTCATCCTTCTCTTTCTTACT
CTTCTTATTCTCCTTCTCCTTCACAAACCTAAATATGCCTGGACATTAGA
GGAACGGAGCCCGGTCCTTCCATTATCTATAAAGGCAAAGTGATCAAGCA
CATGTAATACAAATGCTACAAGACTTCTCTTAAGGCTCCAGGCGGAGGTA
CTGCCACGGCACGCGGGCAGTGGGTGGAAGCGGGCATTGGAAATGCTCAA
GTATTAGTGGAGGAGAAGGAAAGGAGCGTAGCAGATAATTATGAACCAAC
GTAAAAAGGGATATGAAAGAGAAGCAGAGGGCCAGAGGTGGTGAGAAGGT
CAGTGGGAGAGAATGGACACGTACAATTACGGTCATCACCAACATTAGAG
GTGTAGGCGCATTAACGGCAGTACGAGGGCCACGAGCCCCGCAGCAGAAG
AAACAGCAAAAGCAGCGGCAGCAGTAACGACAGCGAAATGCAGCAAATTA
GATCATATTTCCGCATTCTAAACTAACCTGCATCATTGCTACTTAGAACA
GATTAAAGGGAACATCATGTGTGATATCAAGGTAGGCGGACGAAGACGAG
AGGGGCAGCTTGCTTACTCGCACAAATCTTGAGTGGGAAATAAAACGATT
GTACTCCAAT
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Coding sequence (CDS) from alignment at chr1:1380548..1383657+

>NO01G05200.1 ID=NO01G05200.1|Name=NO01G05200.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr1:1380548..1383657+ (Nannochloropsis oceanica)
ATGAAGGTTGCCATTTTTAGCAGCCAGGACTACGATAAGAAGTTCTTGAC
GCTCGCGAATGAGGCGCAAGCCCCCGAGTACAGGCACTCTCTTACCTTTT
TGGAAGCCCGCCTGGACGGCATCACCGCAACGCTTGCCGAGCATCACGAC
GTGATATGTGCCTTTGTCAATGACGAGGTGTCGTCTGCCGTGCTGGACAA
GTGCAAGGAACAAAACATCGGGCTCATTGCTTTGCGGAGTGCCGGGTGCA
ACAACGTGGACTTGGCATATCTGGCCAAGAAGGAACTCTCCCTGGTTCAC
GTCCCCGCCTACTCCCCTGAGGCTGTGGCCGAGCATGCCTTGGCGCTTTT
GCTGACCCTCAGCCGCAAGATTCATAAGATCTATAACCGGGTGCGAGACG
GGAACTTCTCTTTGGAAGGTGTGACGCCTGGCTTTGTCCTTCACGGCAAG
ACGGTGGGTGTTCTAGGCACGGGCAAGATTGGGGAGTGCTTCATCCGCAT
CATGATGGGTCTCGGTTGTGACGTGTTGGGCTATGACGTGAGGGAGAACC
CGGCGCTCCAAGCCCTTCAACAGCAATGCCGTGGAGATGGTAAAGGAAGC
TTCGAATACAAGCCTTTGGATGAAGTATTGCAGGCCTCGGACATAATCTC
CCTCCACCTTCCCTTGTTGCCGAAGACAAAAGGGCTGATCAACCATGACA
GCCTCACCAAGATGAAGAAGGGTGTGGTGATCATCAACACCTCCCGAGGC
GGATTGGTGGACAGTAAGGCTGTCATTGACTCTCTGAAAAAGAAGCATAT
AGGTGGCATAGGACTAGACACGTACGAGGAGGAGGAAGAATTCTTCTACC
GCAATCTTTCTCAGGACGTGGTAGGCGACGACCAGCTCATTCGCCTCATG
ACCTTCCCAAATGTGATTATCACCCCGCACCAAGGTTTCTACACTTGTGA
GGCGCTGACGGCCATTGCCGAATCCACCATCCAGAGTATCACTGAGTATG
CACGAGGAACGGAGCCCGGTCCTTCCATTATCTATAAAGGCAAAGTGATC
AAGCACATGTAA
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Synonyms
Publications