NO01G05150.1, NO01G05150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05150.1
Unique NameNO01G05150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1471
Alignment locationchr1:1368465..1370050 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1368465..1370050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05150.1 vs.
Match: EWM29454.1 (hypothetical protein Naga_100083g13 [Nannochloropsis gaditana])

HSP 1 Score: 390.6 bits (1002), Expect = 4.400e-105
Identity = 209/278 (75.18%), Postives = 238/278 (85.61%), Query Frame = 0 
Query:   17 VVDSFVVPCQRPGLGPTMSSAQG---PASSPVTRGDLLKAGGTFFAFSFV-SPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKARLAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTGQGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAALALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKR 291
            + +SF++P +       +S + G    A S  TRG  L AGG  FA SF+ SP+P+WAR LP+GPSK+ELLEKTR KD+EDPVEKKARLAALRKERLERQRQLDAEEEARK DPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAA+ +LQAG+W+KVE+YA  EADNAALPLKLYASSLTGQGLSLDVSYVKVL+ Q +VYGKELE FKK VK++D  KAL++L +ME+AL LYRKTARIDK DGGVGEFPTD+KLGASFGNNNP+LYKK+
Sbjct:   23 LAESFIIPSRVVTRSSALSMSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 300
The following BLAST results are available for this feature:
BLAST of NO01G05150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29454.14.400e-10575.18hypothetical protein Naga_100083g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05150NO01G05150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05150.1NO01G05150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05150.1.cds1NO01G05150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05150.1.cds2NO01G05150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05150.1 ID=NO01G05150.1|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp
TCGTGATATGTATATTTTTTCTTTCCCTCTTCTCACAATTATGATTCACC
CTTCCTCATGCGCATTTACGTCACCCTCTGTCCTGTGGTTTGTAAATTTT
GTATGGAGACCTGTCGAGTTCTGTTGATTATTCTGATTGATTGATTAATT
GGTTAATTGATTGATTCTTGTGAACAAACCTCCTCCTCATGTGGTCCATT
TGATGTTTGTCGTCCTGTTAAGCCAAGAGCGAGCATCCACGCTGATCCAT
GTCCACACTCACCAATGCAGCAGAGCCCTCCACACAAAGTGATGAAAAAA
TATGAAGGGAACTGCGAGTCAGAGGGCGTAACCGCTCTGCAAGTGAGATT
TGCGACTTTTCCCTTCGCTTTACTCATCACACAAACTGGCATCGATCCAA
CTAACTCCCAACACATTCACACAGAGGCATGTTGTGGCTGCGGCCAGCCT
TGTTCGTGGCCTTGCTGTGCCTGGTCGTGGTGGATAGCTTCGTGGTACCT
TGCCAGCGTCCGGGATTAGGCCCAACCATGTCGTCGGCGCAGGGACCGGC
GTCATCACCCGTGACACGCGGCGATCTGCTCAAAGCGGGCGGTACCTTTT
TCGCCTTCTCCTTCGTTTCCCCGAACCCCACCTGGGCACGCGGCCTGCCT
ACGGGACCCAGCAAGTCCGAGCTCCTGGAGAAAACCAGAAACAAGGACAC
CGAGGACCCCGTAGAGAAGAAAGCACGCCTAGCCGCCCTCAGAAAAGAAC
GCCTGGAACGCCAACGTCAACTGGATGCCGAGGAAGAGGCCCGCAAGAAC
GACCCCAATCGCAAAGAAGTTGATATTGACGCCAATCTCCGTGCCTCCTA
CTACTATCCCACTGCCCAAAAGCGCTACCTCCCCCGCGTCAAGGCCGCTG
CGGATGCCCTACCCGCCGCCAAGGCTAGTCTCCAAGCTGGGCAATGGGAC
AAAGTCGAAGCTTACGCCAACACGGAGGCGGACAATGCCGCCTTGCCCCT
CAAGCTGTACGCATCCTCCCTCACTGGCCAAGGTCTATCTCTGGACGTGT
CCTACGTAAAAGTTCTCAATACGCAGGCGGAGGTGTATGGAAAGGAGCTA
GAAACATTCAAAAAAGCAGTCAAAGCCAAGGATGCCGGCAAGGCCCTGTC
TACCTTAGACAGAATGGAAGCTGCGCTTGCTCTCTACCGGAAGACGGCAC
GGATTGACAAGGCGGATGGGGGTGTGGGCGAGTTCCCGACAGACAGTAAG
TTGGGTGCTAGCTTTGGGAACAACAACCCGAGTTTATACAAAAAGCGAGG
GAAGGAGTAATTGACAGATTAGTGGCCACGGAAGGTTTTATAGAGCGCAA
GTCCTCAGAAAGCAGGAGGCACACGTGTGATTATAGTAGGGATTCAAAAA
GAGGGTTGGCACCCTCGAGAAAACAAAAATACAATGACTAAAGAGATCAA
CAAGGAAAGGACTTCATGACA
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protein sequence of NO01G05150.1

>NO01G05150.1-protein ID=NO01G05150.1-protein|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MLWLRPALFVALLCLVVVDSFVVPCQRPGLGPTMSSAQGPASSPVTRGDL
LKAGGTFFAFSFVSPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKAR
LAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRY
LPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTG
QGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAAL
ALYRKTARIDKADGGVGEFPTDSKLGASFGNNNPSLYKKRGKE*
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mRNA from alignment at chr1:1368465..1370050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05150.1 ID=NO01G05150.1|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at chr1:1368465..1370050- (Nannochloropsis oceanica)
TCGTGATATGTATATTTTTTCTTTCCCTCTTCTCACAATTATGATTCACC
CTTCCTCATGCGCATTTACGTCACCCTCTGTCCTGTGGTTTGTAAATTTT
GTATGGAGACCTGTCGAGTTCTGTTGATTATTCTGATTGATTGATTAATT
GGTTAATTGATTGATTCTTGTGAACAAACCTCCTCCTCATGTGGTCCATT
TGATGTTTGTCGTCCTGTTAAGCCAAGAGCGAGCATCCACGCTGATCCAT
GTCCACACTCACCAATGCAGCAGAGCCCTCCACACAAAGTGATGAAAAAA
TATGAAGGGAACTGCGAGTCAGAGGGCGTAACCGCTCTGCAAGTGAGATT
TGCGACTTTTCCCTTCGCTTTACTCATCACACAAACTGGCATCGATCCAA
CTAACTCCCAACACATTCACACAGAGGCATGTTGTGGCTGCGGCCAGCCT
TGTTCGTGGCCTTGCTGTGCCTGGTCGTGGTGGATAGCTTCGTGGTACCT
TGCCAGCGTCCGGGATTAGGTAAGAGGCAGATAGAAAGAAAGCGGGCCTC
TCATCACGGCAAACCTGCGCTTGTCCCAACCATGCCCACTCATATCGACT
GTGTCCCTTTTAATCCTTCATCCCAAATACACAGGCCCAACCATGTCGTC
GGCGCAGGGACCGGCGTCATCACCCGTGACACGCGGCGATCTGCTCAAAG
CGGGCGGTACCTTTTTCGCCTTCTCCTTCGTTTCCCCGAACCCCACCTGG
GCACGCGGCCTGCCTACGGGACCCAGCAAGTCCGAGCTCCTGGAGAAAAC
CAGAAACAAGGACACCGAGGACCCCGTAGAGAAGAAAGCACGCCTAGCCG
CCCTCAGAAAAGAACGCCTGGAACGCCAACGTCAACTGGATGCCGAGGAA
GAGGCCCGCAAGAACGACCCCAATCGCAAAGAAGTTGATATTGACGCCAA
TCTCCGTGCCTCCTACTACTATCCCACTGCCCAAAAGCGCTACCTCCCCC
GCGTCAAGGCCGCTGCGGATGCCCTACCCGCCGCCAAGGCTAGTCTCCAA
GCTGGGCAATGGGACAAAGTCGAAGCTTACGCCAACACGGAGGCGGACAA
TGCCGCCTTGCCCCTCAAGCTGTACGCATCCTCCCTCACTGGCCAAGGTC
TATCTCTGGACGTGTCCTACGTAAAAGTTCTCAATACGCAGGCGGAGGTG
TATGGAAAGGAGCTAGAAACATTCAAAAAAGCAGTCAAAGCCAAGGATGC
CGGCAAGGCCCTGTCTACCTTAGACAGAATGGAAGCTGCGCTTGCTCTCT
ACCGGAAGACGGCACGGATTGACAAGGCGGATGGGGGTGTGGGCGAGTTC
CCGACAGACAGTAAGTTGGGTGCTAGCTTTGGGAACAACAACCCGAGTTT
ATACAAAAAGCGAGGGAAGGAGTAATTGACAGATTAGTGGCCACGGAAGG
TTTTATAGAGCGCAAGTCCTCAGAAAGCAGGAGGCACACGTGTGATTATA
GTAGGGATTCAAAAAGAGGGTTGGCACCCTCGAGAAAACAAAAATACAAT
GACTAAAGAGATCAACAAGGAAAGGACTTCATGACA
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Coding sequence (CDS) from alignment at chr1:1368465..1370050-

>NO01G05150.1 ID=NO01G05150.1|Name=NO01G05150.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr1:1368465..1370050- (Nannochloropsis oceanica)
ATGTTGTGGCTGCGGCCAGCCTTGTTCGTGGCCTTGCTGTGCCTGGTCGT
GGTGGATAGCTTCGTGGTACCTTGCCAGCGTCCGGGATTAGGCCCAACCA
TGTCGTCGGCGCAGGGACCGGCGTCATCACCCGTGACACGCGGCGATCTG
CTCAAAGCGGGCGGTACCTTTTTCGCCTTCTCCTTCGTTTCCCCGAACCC
CACCTGGGCACGCGGCCTGCCTACGGGACCCAGCAAGTCCGAGCTCCTGG
AGAAAACCAGAAACAAGGACACCGAGGACCCCGTAGAGAAGAAAGCACGC
CTAGCCGCCCTCAGAAAAGAACGCCTGGAACGCCAACGTCAACTGGATGC
CGAGGAAGAGGCCCGCAAGAACGACCCCAATCGCAAAGAAGTTGATATTG
ACGCCAATCTCCGTGCCTCCTACTACTATCCCACTGCCCAAAAGCGCTAC
CTCCCCCGCGTCAAGGCCGCTGCGGATGCCCTACCCGCCGCCAAGGCTAG
TCTCCAAGCTGGGCAATGGGACAAAGTCGAAGCTTACGCCAACACGGAGG
CGGACAATGCCGCCTTGCCCCTCAAGCTGTACGCATCCTCCCTCACTGGC
CAAGGTCTATCTCTGGACGTGTCCTACGTAAAAGTTCTCAATACGCAGGC
GGAGGTGTATGGAAAGGAGCTAGAAACATTCAAAAAAGCAGTCAAAGCCA
AGGATGCCGGCAAGGCCCTGTCTACCTTAGACAGAATGGAAGCTGCGCTT
GCTCTCTACCGGAAGACGGCACGGATTGACAAGGCGGATGGGGGTGTGGG
CGAGTTCCCGACAGACAGTAAGTTGGGTGCTAGCTTTGGGAACAACAACC
CGAGTTTATACAAAAAGCGAGGGAAGGAGTAA
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Synonyms
Publications