NO01G05110.1, NO01G05110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05110.1
Unique NameNO01G05110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length705
Alignment locationchr1:1360095..1361154 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1360095..1361154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05110.1 vs.
Match: EWM29439.1 (origin recognition complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 276.6 bits (706), Expect = 7.300e-71
Identity = 151/232 (65.09%), Postives = 180/232 (77.59%), Query Frame = 0 
Query:    1 MEPPADLSPSARKRPRT---------STSSSSSNIDTLQDIHGMPSLQAAIIAARALLKRRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGTGKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQLEMSKTLDTSKRRSTGGSAAGGRGG-GRGARNQLDFVVEGMRSGTFEETPLVFVIDNIEEFARRGGRGGGGGGG 223
            M   A  SP  RKRPR+         S + S+ ++D+L+D+ G P+L + +  A+AL KRRLS  Y+PPPS PAPLGLE Q++QI ELLVKAL+ +MH+PFLLVGSRGTGKSLCLEHAFARLRERYR +   RPFRVVYV+G +ESTD  A++EIAAQLEMSK LDTSK++ TGGSAAGG+GG G GA   L F+VE MR GT EETPLVFVID+IE FA +GGRGGGGGGG
Sbjct:   30 MGSSAASSPERRKRPRSGGDASLCPSSPTPSAPDLDSLEDLRGTPALMSVVSEAQALFKRRLSASYIPPPSLPAPLGLETQAAQIYELLVKALENKMHDPFLLVGSRGTGKSLCLEHAFARLRERYRARQVARPFRVVYVDGWLESTDATAMAEIAAQLEMSKALDTSKKKFTGGSAAGGQGGLGCGANQHLQFIVEAMRRGTSEETPLVFVIDHIEAFAGQGGRGGGGGGG 261
The following BLAST results are available for this feature:
BLAST of NO01G05110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29439.17.300e-7165.09origin recognition complex subunit 4 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05110NO01G05110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05110.1NO01G05110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05110.1.cds1NO01G05110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05110.1.cds2NO01G05110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05110.1 ID=NO01G05110.1|Name=NO01G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=705bp
ATGGAGCCTCCCGCTGACCTCTCTCCATCGGCTCGGAAGCGACCACGGAC
ATCCACTTCCTCATCCTCGTCCAACATTGACACCTTACAAGATATCCACG
GCATGCCCTCTCTTCAAGCTGCCATAATCGCCGCCCGTGCCCTGCTCAAA
CGTCGTCTCTCTCCCGGCTACCTCCCCCCTCCCTCCGACCCCGCCCCCCT
CGGTCTCGAAGCTCAGTCCTCCCAAATCCAAGAGTTATTAGTCAAAGCCT
TGGACAAACGAATGCACGAGCCTTTCTTATTGGTAGGATCGCGGGGAACG
GGGAAGAGTCTGTGTCTGGAGCACGCATTCGCGAGATTGAGAGAGCGGTA
TCGCGTGCAGGGGAAACTACGGCCTTTTAGGGTGGTATATGTTAATGGTC
GAATGGAGAGTACGGATGTGGGGGCAATCAGTGAAATTGCGGCGCAGCTG
GAGATGAGCAAGACGTTGGATACCTCGAAAAGGAGATCGACAGGGGGCAG
CGCGGCAGGAGGGAGGGGGGGAGGGAGGGGGGCGAGGAATCAGCTGGATT
TTGTGGTGGAGGGGATGAGGAGTGGCACGTTTGAGGAGACGCCGTTGGTG
TTTGTTATCGACAATATTGAGGAATTTGCGCGGCGAGGGGGAAGAGGAGG
GGGAGGAGGAGGAGGAGCAGGAGGGGGGGAAAGCAGTTGTTGTTGTATTC
GTTAA
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protein sequence of NO01G05110.1

>NO01G05110.1-protein ID=NO01G05110.1-protein|Name=NO01G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MEPPADLSPSARKRPRTSTSSSSSNIDTLQDIHGMPSLQAAIIAARALLK
RRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGT
GKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQL
EMSKTLDTSKRRSTGGSAAGGRGGGRGARNQLDFVVEGMRSGTFEETPLV
FVIDNIEEFARRGGRGGGGGGGAGGGESSCCCIR*
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mRNA from alignment at chr1:1360095..1361154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05110.1 ID=NO01G05110.1|Name=NO01G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp|location=Sequence derived from alignment at chr1:1360095..1361154- (Nannochloropsis oceanica)
ATGGAGCCTCCCGCTGACCTCTCTCCATCGGCTCGGAAGCGACCACGGAC
ATGTACGTCCTGCTGCTGCCTTCTGCCTCGTCTACCAGTCTATTTCCCTA
TCATCATTCCCTCCCTACGTCTGTGGTCAGCTCTTTTAATTGTCCCTAAG
ATGTTTTAGATGCCGAAACCCTTCGTTCCCTCCCCCCCTCCCTATTTCCC
TCTTGCTCTCCTTCCCTCCCATCCCACTCCTGCTCCTCCAACACCCCAAC
CATACTCTCCTCCTTCCTTTCTTCTCTTCCCAACTTTCTAGATGCAAAGA
TCCAATCTGCATGAGTGTGCCTGACCTGATTGACACGATGCTGACACCCT
TCCTCCCTTCTTCCTCTCCCCCACCCCACCATTGTTACCACCTATCGTAC
TACGAAGCCACTTCCTCATCCTCGTCCAACATTGACACCTTACAAGATAT
CCACGGCATGCCCTCTCTTCAAGCTGCCATAATCGCCGCCCGTGCCCTGC
TCAAACGTCGTCTCTCTCCCGGCTACCTCCCCCCTCCCTCCGACCCCGCC
CCCCTCGGTCTCGAAGCTCAGTCCTCCCAAATCCAAGAGTTATTAGTCAA
AGCCTTGGACAAACGAATGCACGAGCCTTTCTTATTGGTAGGATCGCGGG
GAACGGGGAAGAGTCTGTGTCTGGAGCACGCATTCGCGAGATTGAGAGAG
CGGTATCGCGTGCAGGGGAAACTACGGCCTTTTAGGGTGGTATATGTTAA
TGGTCGAATGGAGAGTACGGATGTGGGGGCAATCAGTGAAATTGCGGCGC
AGCTGGAGATGAGCAAGACGTTGGATACCTCGAAAAGGAGATCGACAGGG
GGCAGCGCGGCAGGAGGGAGGGGGGGAGGGAGGGGGGCGAGGAATCAGCT
GGATTTTGTGGTGGAGGGGATGAGGAGTGGCACGTTTGAGGAGACGCCGT
TGGTGTTTGTTATCGACAATATTGAGGAATTTGCGCGGCGAGGGGGAAGA
GGAGGGGGAGGAGGAGGAGGAGCAGGAGGGGGGGAAAGCAGTTGTTGTTG
TATTCGTTAA
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Coding sequence (CDS) from alignment at chr1:1360095..1361154-

>NO01G05110.1 ID=NO01G05110.1|Name=NO01G05110.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr1:1360095..1361154- (Nannochloropsis oceanica)
ATGGAGCCTCCCGCTGACCTCTCTCCATCGGCTCGGAAGCGACCACGGAC
ATCCACTTCCTCATCCTCGTCCAACATTGACACCTTACAAGATATCCACG
GCATGCCCTCTCTTCAAGCTGCCATAATCGCCGCCCGTGCCCTGCTCAAA
CGTCGTCTCTCTCCCGGCTACCTCCCCCCTCCCTCCGACCCCGCCCCCCT
CGGTCTCGAAGCTCAGTCCTCCCAAATCCAAGAGTTATTAGTCAAAGCCT
TGGACAAACGAATGCACGAGCCTTTCTTATTGGTAGGATCGCGGGGAACG
GGGAAGAGTCTGTGTCTGGAGCACGCATTCGCGAGATTGAGAGAGCGGTA
TCGCGTGCAGGGGAAACTACGGCCTTTTAGGGTGGTATATGTTAATGGTC
GAATGGAGAGTACGGATGTGGGGGCAATCAGTGAAATTGCGGCGCAGCTG
GAGATGAGCAAGACGTTGGATACCTCGAAAAGGAGATCGACAGGGGGCAG
CGCGGCAGGAGGGAGGGGGGGAGGGAGGGGGGCGAGGAATCAGCTGGATT
TTGTGGTGGAGGGGATGAGGAGTGGCACGTTTGAGGAGACGCCGTTGGTG
TTTGTTATCGACAATATTGAGGAATTTGCGCGGCGAGGGGGAAGAGGAGG
GGGAGGAGGAGGAGGAGCAGGAGGGGGGGAAAGCAGTTGTTGTTGTATTC
GTTAA
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Synonyms
Publications