NO01G04920.1, NO01G04920.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04920.1
Unique Name	NO01G04920.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2130
Alignment location	chr1:1301932..1304061 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1301932..1304061 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G04920.1 vs.
Match: EWM29397.1 (prolyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1002.7 bits (2591), Expect = 5.700e-289
Identity = 514/698 (73.64%), Postives = 581/698 (83.24%), Query Frame = 0

Query:    1 MPPPPILGGFRLLIATSGMLLLLTRRLSLTAAFVPKRCPSTLNRIHSSRSQSSSHSSSSSFRSSSSLFSPHRRRSTGAYHLLSSTTS--SGPAVESLRAAIGAKGDEIRALKGSGADKAALQPLITELLGLKKQYEEETGEPFDPPKAGGSDGGGKKKKASGGSSSSKKKVKPKNNNGEDDDGIMMQYADRASLVITPRDENYSQWYLDVIAAADLVDQSPVKGCMVIKPYGMALWDALREELDKRIKATGAQNAYFPLFIPRSFLSKEAEHVDGFAKECAVVTHHRLCADPSGAPGLIPDPTAKLEEPLVVRPTSETVIWNMFSKWIGSHRDLPLKINQWANVVRWEMRTRPFLRSAEFLWQEGHTAHATREEALVCAKEQLDLYASVCEDMLALPVIKGIKSETERFAGADETFTIEALMQNGWALQSGTSHFLGQNFARAFDVFFQTKEGGREMVWATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQVVVVPIVKGAGSEEDDRTTAFVNTVVSAMRTQGIRVLVDDRPNMRPGAKFFDWERKGVPLRLEIGPRDAAAGAVTLARRMGGEKETVPAGNNFGHVIQKELEGCQASLLSKAEERVSSRTFRVDTYEEMKARLREGGREEIGFFLAHWKDDKENEAKIKEDCRATIRCYPLDLNGEGSMGARVGERKCFYSGEPATHIALFARAF 697
            M P P+L G RLL  ++GM+LL T RL+  AA+V  R PS   R +  ++ +S  S S    S+S+     R +      L SS+T   S PA+E+LR AIG KGDEIR LK  GADKAALQPL++ELL LK Q+E+  G P+DPPK GG    GKK+ A  G    K+K K    + ++++G+M Q+ADR+SL ITPRDENYSQWYLDVIAAADLVDQSPVKGCMVIKPYGMALWDALR+ELDKRIKA GAQNAYFPLFIPRSFLSKEAEHV+GFAKECAVVTHHRLC DP+G PGL+PDP+A+LEEPL+VRPTSET+IWNMF KWI SHRDLPLKINQWANVVRWEMRTRPFLRS+EFLWQEGHTAHA+REEA+  A++QLDLY +VC DMLALPV+KG+KS +ERFAGA+ETFTIEALMQNGWALQSGTSHFLGQNFARAFDV FQT EG RE+VWATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQVVVVPI+KGAGSEEDDRTTAF+NTV SA+RTQ +RV VD+R NMRPGAK+F+WERKGVP+RLEIGPRDAAAG VTLARR GG KET+PAGN FGHVIQ ELE CQ+ LL +AE+RV+S T+RVD Y EMK RL  GGRE+IGFFLA WKDD  NEA IKEDCRATIRCYPLDLN +     RV  RKCFYSGEPATHIALFARA+
Sbjct:    1 MLPQPLLRGRRLLFGSAGMILLFTGRLAPLAAWVAPR-PSPAPRNYLPQAFASLSSYSLGPFSASTRLDRRRTKGHARSRLFSSSTPRVSSPALETLREAIGRKGDEIRGLKVGGADKAALQPLVSELLDLKAQFEDVAGVPYDPPKGGG----GKKQGAKNGG---KQKTKLAAGDADEEEGVMKQHADRSSLAITPRDENYSQWYLDVIAAADLVDQSPVKGCMVIKPYGMALWDALRDELDKRIKANGAQNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCVDPAGGPGLVPDPSAQLEEPLIVRPTSETMIWNMFGKWITSHRDLPLKINQWANVVRWEMRTRPFLRSSEFLWQEGHTAHASREEAVGYARDQLDLYGNVCRDMLALPVVKGVKSASERFAGAEETFTIEALMQNGWALQSGTSHFLGQNFARAFDVDFQTAEGTRELVWATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQVVVVPILKGAGSEEDDRTTAFMNTVASALRTQNVRVHVDNRANMRPGAKYFEWERKGVPIRLEIGPRDAAAGVVTLARRTGGAKETIPAGNTFGHVIQNELEACQSYLLEEAEKRVASHTYRVDAYVEMKERLAGGGREDIGFFLAPWKDDAVNEAAIKEDCRATIRCYPLDLNADPD---RVQARKCFYSGEPATHIALFARAY 687

The following BLAST results are available for this feature:

BLAST of NO01G04920.1 vs.

BLAST of NO01G04920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29397.1	5.700e-289	73.64	prolyl-trna synthetase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04920	NO01G04920	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04920.1	NO01G04920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04920.1.cds1	NO01G04920.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1301932..1304061-
coding sequence from alignment at chr1:1301932..1304061-

mRNA sequence

>NO01G04920.1 ID=NO01G04920.1|Name=NO01G04920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2130bp
ACAGAGACCTACCCACGCATGCCGCCTCCGCCTATCCTGGGTGGCTTTCG
TCTCCTTATTGCCACCAGCGGCATGCTTCTCCTCCTGACTCGACGCCTGT
CCTTGACGGCCGCATTTGTCCCGAAACGCTGCCCCTCGACTCTCAATCGC
ATCCACTCCTCCCGCTCCCAATCCTCTTCCCACTCCTCCTCTTCCTCTTT
CAGGTCTTCTTCCTCCTTGTTTTCCCCCCATAGAAGAAGAAGTACCGGTG
CTTACCATTTGTTGAGCAGCACCACTTCTTCGGGCCCCGCGGTGGAGAGT
CTTCGAGCCGCGATTGGTGCTAAGGGCGATGAGATCCGTGCGTTAAAAGG
CAGCGGAGCCGACAAAGCAGCTCTTCAGCCGCTGATTACCGAATTGTTGG
GGCTTAAGAAGCAGTATGAAGAGGAGACAGGCGAACCGTTTGACCCGCCC
AAGGCCGGAGGTAGTGATGGAGGAGGAAAAAAGAAGAAGGCGAGTGGCGG
CAGCAGCAGCAGCAAAAAGAAAGTCAAGCCCAAGAACAACAACGGAGAAG
ACGACGACGGCATCATGATGCAATACGCAGATCGGGCCTCTCTTGTTATC
ACCCCACGAGATGAAAACTACTCGCAGTGGTACCTGGACGTGATTGCCGC
GGCTGATCTCGTTGATCAAAGCCCCGTGAAAGGCTGCATGGTAATCAAAC
CCTATGGCATGGCCTTGTGGGATGCTTTGAGGGAAGAACTCGACAAGCGA
ATCAAGGCCACAGGAGCTCAAAATGCGTATTTCCCCCTTTTCATCCCTCG
TTCTTTCCTGAGTAAGGAGGCTGAGCACGTGGATGGCTTCGCGAAGGAAT
GTGCTGTGGTCACACACCATCGCTTGTGCGCGGATCCCTCAGGTGCCCCT
GGATTGATCCCGGACCCGACTGCAAAACTGGAAGAGCCGTTGGTGGTGAG
ACCGACGTCGGAAACCGTTATTTGGAATATGTTTAGCAAGTGGATTGGCT
CCCACCGGGACTTGCCGTTGAAAATCAACCAATGGGCGAATGTCGTCAGG
TGGGAGATGCGGACGAGGCCATTTCTGCGGAGTGCCGAGTTTTTGTGGCA
GGAGGGGCATACGGCCCATGCGACACGGGAGGAGGCTTTGGTGTGCGCTA
AGGAACAGCTTGACTTGTACGCAAGCGTATGCGAGGACATGTTGGCTTTG
CCTGTGATCAAGGGGATAAAAAGCGAGACCGAGAGGTTCGCCGGGGCCGA
TGAAACCTTTACGATCGAGGCGTTGATGCAAAATGGATGGGCTTTACAAA
GCGGGACTAGCCATTTTTTGGGGCAGAATTTTGCACGGGCATTCGACGTG
TTTTTTCAGACGAAGGAGGGAGGGAGGGAGATGGTGTGGGCGACGAGTTG
GGGTGTGAGCACGCGGTTGATTGGTGCATTGGTGATGACGCACAGTGACG
ACAAGGGCCTAGTACTGCCCCCGTCGGTGGCGCCGGTGCAGGTGGTAGTT
GTGCCGATTGTGAAGGGGGCGGGAAGCGAGGAGGACGACCGTACGACGGC
GTTTGTGAATACGGTGGTGTCGGCGATGCGGACACAGGGGATAAGGGTCC
TTGTGGACGACCGGCCGAACATGAGACCAGGAGCCAAATTTTTCGATTGG
GAGAGGAAGGGCGTGCCATTGCGACTGGAGATAGGACCGAGGGACGCCGC
GGCGGGGGCGGTGACTTTGGCGAGGAGAATGGGGGGGGAGAAGGAAACGG
TGCCAGCGGGGAATAACTTCGGGCATGTGATCCAAAAGGAGCTGGAGGGT
TGCCAGGCATCGTTGCTGAGCAAAGCTGAAGAAAGGGTGTCTTCGCGTAC
GTTTCGAGTAGACACGTATGAGGAGATGAAGGCAAGGTTGCGGGAGGGAG
GGAGGGAGGAGATTGGGTTCTTCTTGGCTCACTGGAAGGATGATAAGGAG
AATGAGGCGAAGATAAAGGAGGACTGTCGGGCCACCATCAGGTGCTACCC
ACTTGATCTGAATGGGGAGGGATCGATGGGGGCGAGGGTGGGGGAGAGAA
AGTGTTTTTATTCGGGCGAACCAGCGACGCATATTGCCTTGTTTGCACGG
GCGTTTTAGAGGAAGGGAGGGATCGGGGGA

protein sequence of NO01G04920.1

>NO01G04920.1-protein ID=NO01G04920.1-protein|Name=NO01G04920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MPPPPILGGFRLLIATSGMLLLLTRRLSLTAAFVPKRCPSTLNRIHSSRS
QSSSHSSSSSFRSSSSLFSPHRRRSTGAYHLLSSTTSSGPAVESLRAAIG
AKGDEIRALKGSGADKAALQPLITELLGLKKQYEEETGEPFDPPKAGGSD
GGGKKKKASGGSSSSKKKVKPKNNNGEDDDGIMMQYADRASLVITPRDEN
YSQWYLDVIAAADLVDQSPVKGCMVIKPYGMALWDALREELDKRIKATGA
QNAYFPLFIPRSFLSKEAEHVDGFAKECAVVTHHRLCADPSGAPGLIPDP
TAKLEEPLVVRPTSETVIWNMFSKWIGSHRDLPLKINQWANVVRWEMRTR
PFLRSAEFLWQEGHTAHATREEALVCAKEQLDLYASVCEDMLALPVIKGI
KSETERFAGADETFTIEALMQNGWALQSGTSHFLGQNFARAFDVFFQTKE
GGREMVWATSWGVSTRLIGALVMTHSDDKGLVLPPSVAPVQVVVVPIVKG
AGSEEDDRTTAFVNTVVSAMRTQGIRVLVDDRPNMRPGAKFFDWERKGVP
LRLEIGPRDAAAGAVTLARRMGGEKETVPAGNNFGHVIQKELEGCQASLL
SKAEERVSSRTFRVDTYEEMKARLREGGREEIGFFLAHWKDDKENEAKIK
EDCRATIRCYPLDLNGEGSMGARVGERKCFYSGEPATHIALFARAF*

mRNA from alignment at chr1:1301932..1304061-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04920.1 ID=NO01G04920.1|Name=NO01G04920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2130bp|location=Sequence derived from alignment at chr1:1301932..1304061- (Nannochloropsis oceanica)
ACAGAGACCTACCCACGCATGCCGCCTCCGCCTATCCTGGGTGGCTTTCG
TCTCCTTATTGCCACCAGCGGCATGCTTCTCCTCCTGACTCGACGCCTGT
CCTTGACGGCCGCATTTGTCCCGAAACGCTGCCCCTCGACTCTCAATCGC
ATCCACTCCTCCCGCTCCCAATCCTCTTCCCACTCCTCCTCTTCCTCTTT
CAGGTCTTCTTCCTCCTTGTTTTCCCCCCATAGAAGAAGAAGTACCGGTG
CTTACCATTTGTTGAGCAGCACCACTTCTTCGGGCCCCGCGGTGGAGAGT
CTTCGAGCCGCGATTGGTGCTAAGGGCGATGAGATCCGTGCGTTAAAAGG
CAGCGGAGCCGACAAAGCAGCTCTTCAGCCGCTGATTACCGAATTGTTGG
GGCTTAAGAAGCAGTATGAAGAGGAGACAGGCGAACCGTTTGACCCGCCC
AAGGCCGGAGGTAGTGATGGAGGAGGAAAAAAGAAGAAGGCGAGTGGCGG
CAGCAGCAGCAGCAAAAAGAAAGTCAAGCCCAAGAACAACAACGGAGAAG
ACGACGACGGCATCATGATGCAATACGCAGATCGGGCCTCTCTTGTTATC
ACCCCACGAGATGAAAACTACTCGCAGTGGTACCTGGACGTGATTGCCGC
GGCTGATCTCGTTGATCAAAGCCCCGTGAAAGGCTGCATGGTAATCAAAC
CCTATGGCATGGCCTTGTGGGATGCTTTGAGGGAAGAACTCGACAAGCGA
ATCAAGGCCACAGGAGCTCAAAATGCGTATTTCCCCCTTTTCATCCCTCG
TTCTTTCCTGAGTAAGGAGGCTGAGCACGTGGATGGCTTCGCGAAGGAAT
GTGCTGTGGTCACACACCATCGCTTGTGCGCGGATCCCTCAGGTGCCCCT
GGATTGATCCCGGACCCGACTGCAAAACTGGAAGAGCCGTTGGTGGTGAG
ACCGACGTCGGAAACCGTTATTTGGAATATGTTTAGCAAGTGGATTGGCT
CCCACCGGGACTTGCCGTTGAAAATCAACCAATGGGCGAATGTCGTCAGG
TGGGAGATGCGGACGAGGCCATTTCTGCGGAGTGCCGAGTTTTTGTGGCA
GGAGGGGCATACGGCCCATGCGACACGGGAGGAGGCTTTGGTGTGCGCTA
AGGAACAGCTTGACTTGTACGCAAGCGTATGCGAGGACATGTTGGCTTTG
CCTGTGATCAAGGGGATAAAAAGCGAGACCGAGAGGTTCGCCGGGGCCGA
TGAAACCTTTACGATCGAGGCGTTGATGCAAAATGGATGGGCTTTACAAA
GCGGGACTAGCCATTTTTTGGGGCAGAATTTTGCACGGGCATTCGACGTG
TTTTTTCAGACGAAGGAGGGAGGGAGGGAGATGGTGTGGGCGACGAGTTG
GGGTGTGAGCACGCGGTTGATTGGTGCATTGGTGATGACGCACAGTGACG
ACAAGGGCCTAGTACTGCCCCCGTCGGTGGCGCCGGTGCAGGTGGTAGTT
GTGCCGATTGTGAAGGGGGCGGGAAGCGAGGAGGACGACCGTACGACGGC
GTTTGTGAATACGGTGGTGTCGGCGATGCGGACACAGGGGATAAGGGTCC
TTGTGGACGACCGGCCGAACATGAGACCAGGAGCCAAATTTTTCGATTGG
GAGAGGAAGGGCGTGCCATTGCGACTGGAGATAGGACCGAGGGACGCCGC
GGCGGGGGCGGTGACTTTGGCGAGGAGAATGGGGGGGGAGAAGGAAACGG
TGCCAGCGGGGAATAACTTCGGGCATGTGATCCAAAAGGAGCTGGAGGGT
TGCCAGGCATCGTTGCTGAGCAAAGCTGAAGAAAGGGTGTCTTCGCGTAC
GTTTCGAGTAGACACGTATGAGGAGATGAAGGCAAGGTTGCGGGAGGGAG
GGAGGGAGGAGATTGGGTTCTTCTTGGCTCACTGGAAGGATGATAAGGAG
AATGAGGCGAAGATAAAGGAGGACTGTCGGGCCACCATCAGGTGCTACCC
ACTTGATCTGAATGGGGAGGGATCGATGGGGGCGAGGGTGGGGGAGAGAA
AGTGTTTTTATTCGGGCGAACCAGCGACGCATATTGCCTTGTTTGCACGG
GCGTTTTAGAGGAAGGGAGGGATCGGGGGA

Coding sequence (CDS) from alignment at chr1:1301932..1304061-

>NO01G04920.1 ID=NO01G04920.1|Name=NO01G04920.1|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at chr1:1301932..1304061- (Nannochloropsis oceanica)
ATGCCGCCTCCGCCTATCCTGGGTGGCTTTCGTCTCCTTATTGCCACCAG
CGGCATGCTTCTCCTCCTGACTCGACGCCTGTCCTTGACGGCCGCATTTG
TCCCGAAACGCTGCCCCTCGACTCTCAATCGCATCCACTCCTCCCGCTCC
CAATCCTCTTCCCACTCCTCCTCTTCCTCTTTCAGGTCTTCTTCCTCCTT
GTTTTCCCCCCATAGAAGAAGAAGTACCGGTGCTTACCATTTGTTGAGCA
GCACCACTTCTTCGGGCCCCGCGGTGGAGAGTCTTCGAGCCGCGATTGGT
GCTAAGGGCGATGAGATCCGTGCGTTAAAAGGCAGCGGAGCCGACAAAGC
AGCTCTTCAGCCGCTGATTACCGAATTGTTGGGGCTTAAGAAGCAGTATG
AAGAGGAGACAGGCGAACCGTTTGACCCGCCCAAGGCCGGAGGTAGTGAT
GGAGGAGGAAAAAAGAAGAAGGCGAGTGGCGGCAGCAGCAGCAGCAAAAA
GAAAGTCAAGCCCAAGAACAACAACGGAGAAGACGACGACGGCATCATGA
TGCAATACGCAGATCGGGCCTCTCTTGTTATCACCCCACGAGATGAAAAC
TACTCGCAGTGGTACCTGGACGTGATTGCCGCGGCTGATCTCGTTGATCA
AAGCCCCGTGAAAGGCTGCATGGTAATCAAACCCTATGGCATGGCCTTGT
GGGATGCTTTGAGGGAAGAACTCGACAAGCGAATCAAGGCCACAGGAGCT
CAAAATGCGTATTTCCCCCTTTTCATCCCTCGTTCTTTCCTGAGTAAGGA
GGCTGAGCACGTGGATGGCTTCGCGAAGGAATGTGCTGTGGTCACACACC
ATCGCTTGTGCGCGGATCCCTCAGGTGCCCCTGGATTGATCCCGGACCCG
ACTGCAAAACTGGAAGAGCCGTTGGTGGTGAGACCGACGTCGGAAACCGT
TATTTGGAATATGTTTAGCAAGTGGATTGGCTCCCACCGGGACTTGCCGT
TGAAAATCAACCAATGGGCGAATGTCGTCAGGTGGGAGATGCGGACGAGG
CCATTTCTGCGGAGTGCCGAGTTTTTGTGGCAGGAGGGGCATACGGCCCA
TGCGACACGGGAGGAGGCTTTGGTGTGCGCTAAGGAACAGCTTGACTTGT
ACGCAAGCGTATGCGAGGACATGTTGGCTTTGCCTGTGATCAAGGGGATA
AAAAGCGAGACCGAGAGGTTCGCCGGGGCCGATGAAACCTTTACGATCGA
GGCGTTGATGCAAAATGGATGGGCTTTACAAAGCGGGACTAGCCATTTTT
TGGGGCAGAATTTTGCACGGGCATTCGACGTGTTTTTTCAGACGAAGGAG
GGAGGGAGGGAGATGGTGTGGGCGACGAGTTGGGGTGTGAGCACGCGGTT
GATTGGTGCATTGGTGATGACGCACAGTGACGACAAGGGCCTAGTACTGC
CCCCGTCGGTGGCGCCGGTGCAGGTGGTAGTTGTGCCGATTGTGAAGGGG
GCGGGAAGCGAGGAGGACGACCGTACGACGGCGTTTGTGAATACGGTGGT
GTCGGCGATGCGGACACAGGGGATAAGGGTCCTTGTGGACGACCGGCCGA
ACATGAGACCAGGAGCCAAATTTTTCGATTGGGAGAGGAAGGGCGTGCCA
TTGCGACTGGAGATAGGACCGAGGGACGCCGCGGCGGGGGCGGTGACTTT
GGCGAGGAGAATGGGGGGGGAGAAGGAAACGGTGCCAGCGGGGAATAACT
TCGGGCATGTGATCCAAAAGGAGCTGGAGGGTTGCCAGGCATCGTTGCTG
AGCAAAGCTGAAGAAAGGGTGTCTTCGCGTACGTTTCGAGTAGACACGTA
TGAGGAGATGAAGGCAAGGTTGCGGGAGGGAGGGAGGGAGGAGATTGGGT
TCTTCTTGGCTCACTGGAAGGATGATAAGGAGAATGAGGCGAAGATAAAG
GAGGACTGTCGGGCCACCATCAGGTGCTACCCACTTGATCTGAATGGGGA
GGGATCGATGGGGGCGAGGGTGGGGGAGAGAAAGTGTTTTTATTCGGGCG
AACCAGCGACGCATATTGCCTTGTTTGCACGGGCGTTTTAG

Synonyms

Publications