NO01G04810.1, NO01G04810.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04810.1
Unique Name	NO01G04810.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2586
Alignment location	chr1:1274147..1277131 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1274147..1277131 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G04810.1 vs.
Match: EWM29421.1 (hypothetical protein Naga_100042g31 [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 2.400e-30
Identity = 115/216 (53.24%), Postives = 133/216 (61.57%), Query Frame = 0

Query:    1 MEDLRGTVYTLVKEWSDTHGVDPHVILMGAGAATLLGLGIMASHTCGGGGRKGKRGGHKTGKKARGKKNDG-NSNSSSSSKPQAPPRQQQQQQQQQQQPPKAAPVVASAAGAKKKRAGGGGQPTPEAIHPPAHKAMPVNGTSSSNSSSSEDVSKNKKKKNK-KKKARAAEGATGGGPSSSSAAAGAVAGGLAAGDEAGKAASSTFVYNNNRGIVEE 215
            ME+ R TVY+LVKEWSDT GVDP+V+LM AGAATLLGLG+MASH CGG     KRGGHK  KK + KK +G   N + +SKP  PPR Q QQ       P  A    S  G  KK++     PTP +  P A  A   NG    +     +V KNKKKKNK KKK    EGATGGG SSS A   ++ G  A G EAG  A+STFVYNN+RG VEE
Sbjct:    1 MENFRTTVYSLVKEWSDTQGVDPNVVLMSAGAATLLGLGLMASHACGGSNGSKKRGGHKH-KKGKSKKTEGMGGNGAGASKPLPPPRHQAQQ-------PSKAGATKSVQGKAKKQS----VPTPASGAPAAAMAAARNGV---HPDPGGEVGKNKKKKNKHKKKGALEEGATGGGNSSSQAKEPSMGGRQAQG-EAG-LANSTFVYNNDRGTVEE 199

The following BLAST results are available for this feature:

BLAST of NO01G04810.1 vs.

BLAST of NO01G04810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29421.1	2.400e-30	53.24	hypothetical protein Naga_100042g31 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04810	NO01G04810	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04810.1	NO01G04810.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04810.1.cds1	NO01G04810.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04810.1.cds2	NO01G04810.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04810.1.cds3	NO01G04810.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1274147..1277131-
coding sequence from alignment at chr1:1274147..1277131-

mRNA sequence

>NO01G04810.1 ID=NO01G04810.1|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2586bp
AATCTAATCCTGAGTTTTTTTGGCATCTCTCAGCTTCATCCACCTTTCTT
TTATCATGGCCTTCAACAGTCTGGGAAGCTGATGCGTGGAATTCCCAAAA
TCCTCAAAAGGGGGAGTGGCAGCGGCAAGAGCAAAGGAGGGATAGAAGGG
AGCGATAAGGTCTTTGTAGAATTTCCTGTACGTGAGCCGTGTCTTTCGCC
TCTATGGGCCGGGCAAGGCTTCACAAGGCTTCACAAGGATATACGTGTCC
TCTTTGTTTGTTCCGTGGCCGGGGTGAAGGGCAGCAACCACGTTGTTGCA
GCAAGAGGTCTTCTTTTTTGCGTTACCTTGATCAAAGCCGGTCCTTAACT
CGGAAGACCACGGTCACGCCGTCTGGTGGCACCGTCGTTCTCTACATCCC
CATCCACTCTCGCAAAGTCTTTACAATGCGATAGCTTGCAGATAGATCGG
GCTTATCAGTCTGGAATGGTCAGTTGCTGTCGTTATGCCCATGCTTGAGC
TTTGCTTCGCCGTCGTCATCGATTCTCAGTCAGACAGACACTCATCCTTT
TACAACAGACTTGGAGGCCTCTGACCATGCAAGCAACTTAGACCCACCAA
GAGCTCAAAAAAATCTATCGAAATTTCCAATCTCACGCGCTCCTCCTCGC
CCAACCTCGTTCTCAGCGCTTATCTCTGCAACAGAAAACACTCTTATCAA
CGTTCACCAAGCTGAGGCGTCCGGGTCCTCCGTCACAATCCCATCTCAGC
ATTTCCCCTTTGATTGAACATACTCTCACACAAAAACAGAGTCCGCCTCT
CAACAGTCACTTCACAAGAAGCCAGACGACCCACTAAATCCTACGTCTTT
GCGCGATCGACGCACCACTAGGACTCAACACGAAAGACAAGAAGCGGCAC
GCGCCCGACCGACCACGACTTAGACATGGAGGACCTCAGGGGGACGGTGT
ACACATTGGTGAAGGAGTGGAGCGATACGCATGGCGTGGACCCACACGTG
ATTTTGATGGGGGCAGGAGCAGCCACCCTCCTAGGTTTGGGCATCATGGC
CTCTCATACCTGCGGCGGGGGCGGACGAAAGGGGAAGCGCGGCGGGCACA
AGACAGGCAAGAAGGCTAGGGGGAAGAAAAACGACGGTAACAGCAACAGC
AGCAGCAGCAGCAAGCCCCAGGCACCTCCACGGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCCACCGAAAGCAGCACCGGTGGTGGCTTCGGCGG
CAGGAGCGAAGAAGAAAAGGGCAGGAGGAGGTGGGCAGCCGACCCCCGAA
GCAATCCATCCCCCCGCTCATAAAGCGATGCCTGTCAACGGCACGAGTAG
CAGCAATAGCAGCAGCAGTGAGGATGTGAGTAAGAATAAGAAGAAGAAGA
ATAAGAAGAAGAAGGCGAGAGCAGCGGAGGGAGCGACAGGGGGAGGGCCT
TCCTCCTCGTCGGCTGCTGCTGGTGCTGTAGCGGGGGGGTTGGCGGCGGG
GGATGAGGCGGGAAAGGCGGCTAGCTCGACGTTTGTGTACAACAACAATC
GAGGAATCGTGGAAGAGTGGGAGACGTTCAACGACCCGGATGCAGGTTGG
AGCGTGGTGGGCAAGAAAAAGCCGAAGGCCCAGAAAAAGGAAGGAGGGGA
GGGTGAGGAGGGCTCGGGTGTGGAGGCATACGGTGGAGAAAGGGAGGCAT
GAGTGGAAGGTTGAAGAGGTTCATCTCTCAATTCTTTCGAGGGGCGAAGG
AGGGAGTGAGGGAGGGAAGGAGGGAGGAGAGAGGAGTATGACTAGATTAG
TTTTGGATCAGTGCAGGATTACATTAAGTGGGGGGCTTGTTGTGAGATTT
ATTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGCCTGTCTCTTTCTAG
AGATCCCTGTATCTCTTTTTCTGTTTTTTTTTGTGATGGTGGTGGTAGCA
CACATACGGACGATACGGAATCTGCCAGAGGCAAAGAGGTGAACGGGGAG
TTTTTTCCTCTTCAAATTGTTTGATTGCTTGCCTGTGTTGTTGAGGCGTC
AAGCGTGTGTGTGAGAGAGATGATGTTTGTCCGTCTGGGTAGACAACTGT
ATGGCAAGGGGGAAGGAAAAACAGTATACATAGTCATTGCCGCAATTAAT
TAGAAAGAAGATTCAACGAGTTGAAGAATACGAGGCGAAGAAGTGGGGGA
TAGGTGGAGAGAAAAGTGACTTCCTCAAACTAAATCAAAAACAAGGAAAT
GAAACCAAGTGCAGAGGAGGGAGAAAGAGGGGCGAAAGGGGGAGAAGGAT
CAGGAAGAAACAAAGTCGGTTCGATTCCTTTCTATGGAAACTTGATGTCA
GCTAGAGGAGGTAGAAGAGGAGGCAGGTGGGAGGAAGTAAGGTCCGAAAC
AAGACCAAAAAGCAATACACGCCTGCAGTGGAAATGAAACGTGCAAGTGG
ATCGGCGTGGAAAAGGAAAAGTGGCCAGTGTGTCATCTCATTGTTAGAAG
AGAAAACAGAACCTGATGAGGACCTTGATGGATTTAGATCATTGCGGCCG
CACATCAAAGAAATGAAGTGCTACACGGACAAGTCA

protein sequence of NO01G04810.1

>NO01G04810.1-protein ID=NO01G04810.1-protein|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MEDLRGTVYTLVKEWSDTHGVDPHVILMGAGAATLLGLGIMASHTCGGGG
RKGKRGGHKTGKKARGKKNDGNSNSSSSSKPQAPPRQQQQQQQQQQQPPK
AAPVVASAAGAKKKRAGGGGQPTPEAIHPPAHKAMPVNGTSSSNSSSSED
VSKNKKKKNKKKKARAAEGATGGGPSSSSAAAGAVAGGLAAGDEAGKAAS
STFVYNNNRGIVEEWETFNDPDAGWSVVGKKKPKAQKKEGGEGEEGSGVE
AYGGEREA*

mRNA from alignment at chr1:1274147..1277131-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04810.1 ID=NO01G04810.1|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp|location=Sequence derived from alignment at chr1:1274147..1277131- (Nannochloropsis oceanica)
AATCTAATCCTGAGTTTTTTTGGCATCTCTCAGCTTCATCCACCTTTCTT
TTATCATGGCCTTCAACAGTCTGGGAAGCTGATGCGTGGAATTCCCAAAA
TCCTCAAAAGGGGGAGTGGCAGCGGCAAGAGCAAAGGAGGGATAGAAGGG
AGCGATAAGGTCTTTGTAGAATTTCCTGTACGTGAGCCGTGTCTTTCGCC
TCTATGGGCCGGGCAAGGCTTCACAAGGCTTCACAAGGATATACGTGTCC
TCTTTGTTTGTTCCGTGGCCGGGGTGAAGGGCAGCAACCACGTTGTTGCA
GCAAGAGGTCTTCTTTTTTGCGTTACCTTGATCAAAGCCGGTCCTTAACT
CGGAAGACCACGGTCACGCCGTCTGGTGGCACCGTCGTTCTCTACATCCC
CATCCACTCTCGCAAAGTCTTTACAATGCGATAGCTTGCAGATAGATCGG
GCTTATCAGTCTGGAATGGTCAGTTGCTGTCGTTATGCCCATGCTTGAGC
TTTGCTTCGCCGTCGTCATCGATTCTCAGTCAGACAGACACTCATCCTTT
TACAACAGACTTGGAGGCCTCTGACCATGCAAGCAACTTAGACCCACCAA
GAGCTCAAAAAAATCTATCGAAATTTCCAATCTCACGCGCTCCTCCTCGC
CCAACCTCGTTCTCAGCGCTTATCTCTGCAACAGAAAACACTCTTATCAA
CGTTCACCAAGCTGAGGCGTCCGGGTCCTCCGTCACAATCCCATCTCAGC
ATTTCCCCTTTGATTGAACATACTCTCACACAAAAACAGAGTCCGCCTCT
CAACAGTCACTTCACAAGAAGCCAGACGACCCACTAAATCCTACGTCTTT
GCGCGATCGACGCACCACTAGGACTCAACACGAAAGACAAGAAGCGGCAC
GCGCCCGACCGACCACGACTTAGACATGGAGGACCTCAGGGGGACGGTGT
ACACATTGGTGAAGGAGTGGAGCGATACGCATGGCGTGGACCCACACGTG
ATTTTGATGGGGGCAGGAGCAGCCACCCTCCTAGGTAAGTGTTGAAGGCA
GGAGGAGTGGGAGGACACGGGCAGTGGGCAGTGAGCGCGGAGGGTAGGAA
TCTCGGAGCACCGTCGATTTTACCTATTTTCTTTTTTTGGCAATCGCCCT
TTCTTTCCTCTGCATATCCATGCTCCAGGTTTGGGCATCATGGCCTCTCA
TACCTGCGGCGGGGGCGGACGAAAGGGGAAGCGCGGCGGGCACAAGACAG
GCAAGAAGGCTAGGGGGAAGAAAAACGACGGTAACAGCAACAGCAGCAGC
AGCAGCAAGCCCCAGGCACCTCCACGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCACCGAAAGCAGCACCGGTGGTGGCTTCGGCGGCAGGAG
CGAAGAAGAAAAGGGCAGGAGGAGGTGGGCAGCCGACCCCCGAAGCAATC
CATCCCCCCGCTCATAAAGCGATGCCTGTCAACGGCACGAGTAGCAGCAA
TAGCAGCAGCAGTGAGGATGTGAGTAAGAATAAGAAGAAGAAGAATAAGA
AGAAGAAGGCGAGAGCAGCGGAGGGAGCGACAGGGGGAGGGCCTTCCTCC
TCGTCGGCTGCTGCTGGTGCTGTAGCGGGGGGGTTGGCGGCGGGGGATGA
GGCGGGAAAGGCGGCTAGCTCGACGTTTGTGTACAACAACAATCGAGGAA
TCGTGGAAGAGGTGCGTCAGAAAGAAGAGAGGGATGAAGGGTACGAGAGG
GAAGTAAGTTTAGTCGTCTTGTCATCTATCCCTAAAGGAACGCACGTGTA
CATCCAACTATTGTCACGTCTTCACCCATTACACGCACTCACACATGTGC
ATACAAACACACACACATGTTGAACATTAATATGTTCTCCACTTTCACAT
TAAGACACACCACCCTCATACAATATATTCCTTATCAACACGCACCACCC
TCGTACATATATACAGTGGGAGACGTTCAACGACCCGGATGCAGGTTGGA
GCGTGGTGGGCAAGAAAAAGCCGAAGGCCCAGAAAAAGGAAGGAGGGGAG
GGTGAGGAGGGCTCGGGTGTGGAGGCATACGGTGGAGAAAGGGAGGCATG
AGTGGAAGGTTGAAGAGGTTCATCTCTCAATTCTTTCGAGGGGCGAAGGA
GGGAGTGAGGGAGGGAAGGAGGGAGGAGAGAGGAGTATGACTAGATTAGT
TTTGGATCAGTGCAGGATTACATTAAGTGGGGGGCTTGTTGTGAGATTTA
TTGTTGTCACATTTCTTAGTTTAAATTTTGTTTGCCTGTCTCTTTCTAGA
GATCCCTGTATCTCTTTTTCTGTTTTTTTTTGTGATGGTGGTGGTAGCAC
ACATACGGACGATACGGAATCTGCCAGAGGCAAAGAGGTGAACGGGGAGT
TTTTTCCTCTTCAAATTGTTTGATTGCTTGCCTGTGTTGTTGAGGCGTCA
AGCGTGTGTGTGAGAGAGATGATGTTTGTCCGTCTGGGTAGACAACTGTA
TGGCAAGGGGGAAGGAAAAACAGTATACATAGTCATTGCCGCAATTAATT
AGAAAGAAGATTCAACGAGTTGAAGAATACGAGGCGAAGAAGTGGGGGAT
AGGTGGAGAGAAAAGTGACTTCCTCAAACTAAATCAAAAACAAGGAAATG
AAACCAAGTGCAGAGGAGGGAGAAAGAGGGGCGAAAGGGGGAGAAGGATC
AGGAAGAAACAAAGTCGGTTCGATTCCTTTCTATGGAAACTTGATGTCAG
CTAGAGGAGGTAGAAGAGGAGGCAGGTGGGAGGAAGTAAGGTCCGAAACA
AGACCAAAAAGCAATACACGCCTGCAGTGGAAATGAAACGTGCAAGTGGA
TCGGCGTGGAAAAGGAAAAGTGGCCAGTGTGTCATCTCATTGTTAGAAGA
GAAAACAGAACCTGATGAGGACCTTGATGGATTTAGATCATTGCGGCCGC
ACATCAAAGAAATGAAGTGCTACACGGACAAGTCA

Coding sequence (CDS) from alignment at chr1:1274147..1277131-

>NO01G04810.1 ID=NO01G04810.1|Name=NO01G04810.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr1:1274147..1277131- (Nannochloropsis oceanica)
ATGGAGGACCTCAGGGGGACGGTGTACACATTGGTGAAGGAGTGGAGCGA
TACGCATGGCGTGGACCCACACGTGATTTTGATGGGGGCAGGAGCAGCCA
CCCTCCTAGGTTTGGGCATCATGGCCTCTCATACCTGCGGCGGGGGCGGA
CGAAAGGGGAAGCGCGGCGGGCACAAGACAGGCAAGAAGGCTAGGGGGAA
GAAAAACGACGGTAACAGCAACAGCAGCAGCAGCAGCAAGCCCCAGGCAC
CTCCACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCGAAA
GCAGCACCGGTGGTGGCTTCGGCGGCAGGAGCGAAGAAGAAAAGGGCAGG
AGGAGGTGGGCAGCCGACCCCCGAAGCAATCCATCCCCCCGCTCATAAAG
CGATGCCTGTCAACGGCACGAGTAGCAGCAATAGCAGCAGCAGTGAGGAT
GTGAGTAAGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGAGAGCAGC
GGAGGGAGCGACAGGGGGAGGGCCTTCCTCCTCGTCGGCTGCTGCTGGTG
CTGTAGCGGGGGGGTTGGCGGCGGGGGATGAGGCGGGAAAGGCGGCTAGC
TCGACGTTTGTGTACAACAACAATCGAGGAATCGTGGAAGAGTGGGAGAC
GTTCAACGACCCGGATGCAGGTTGGAGCGTGGTGGGCAAGAAAAAGCCGA
AGGCCCAGAAAAAGGAAGGAGGGGAGGGTGAGGAGGGCTCGGGTGTGGAG
GCATACGGTGGAGAAAGGGAGGCATGA

Synonyms

Publications