NO01G04740.1, NO01G04740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04740.1
Unique NameNO01G04740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1785
Alignment locationchr1:1252652..1254631 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1252652..1254631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04740.1 vs.
Match: EWM29394.1 (C2 membrane targeting protein [Nannochloropsis gaditana])

HSP 1 Score: 312.8 bits (800), Expect = 1.500e-81
Identity = 183/370 (49.46%), Postives = 225/370 (60.81%), Query Frame = 0 
Query:    7 ISLVAVSLLLLQLLAKTSPQPHPECGLGETPLYIQVHGTDKLTECTDYFDAVDPYAVVTVGQDRYTVSKVTKTINNDADPTWDQVLDYGCQVGNAKIVFRVRDQDYFGDEACLGPLGIVGPWPKSGKRQVMCTRPAPTATHGSSPGTGCISFTLYYGAALPPIIIASDG-----AVTVTSAAEAMAPSPPSPLPSKPDTPSSPLPTVTKRPANTTSTPKGVGESSDPSIPPTPRAPSRPPPPSDPTPPFANVSRPSLSQGQRNASQPAASAQARERPMVQAPSPLATGTEGEKRKEHDRQNAANARRKSAALAFGIVGLLAVAGVGVGLLVSRRRRLRREQHGQDLALDEEGGMRRGAAGDSTPGSVAVL 372
            + L  V  ++  L + T  QP   CGLGET LYIQVHGTDKLT CTDYFD VDPYA+V+VGQDR  VSKVT+T++N+A P+W+QVL++GC   N K+ FRVRDQDYFGDEACLGPL ++GPWP SG+RQV+C  PA       +PGTGCISFTLYYG  LP  I++ DG     A T +S   +  PS PS LPS+PDTPSSPLP+V    AN +++P    E+SDP +PP PRAPS PP       P +   RP L            SA   + P V   +P   G E  K   H          K+A LA GI+ L+A+ G+   + V+RRRR R   H Q L +D      RGA G S  GS  VL
Sbjct:   48 VVLGRVFCVVALLTSSTGAQPLSGCGLGETRLYIQVHGTDKLTACTDYFDNVDPYAIVSVGQDRLAVSKVTRTVDNEASPSWNQVLEFGCVESNTKLTFRVRDQDYFGDEACLGPLRLMGPWPPSGRRQVLCESPAMDPVVAGTPGTGCISFTLYYGLGLPSTIVSGDGTRTSTANTTSSLRPSTTPSLPSTLPSRPDTPSSPLPSVVTPQANVSTSP---AENSDPHVPPPPRAPSLPPSSQSSPSPSSTSPRPPL----------VPSAPGMDHPSVAVRAPAPMGPEASKNTRH-------RSPKAALLAGGIISLVALVGIAAAVAVTRRRRRRAAVHNQGLEVDGTESGVRGAGGSSALGSAEVL 397
The following BLAST results are available for this feature:
BLAST of NO01G04740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29394.11.500e-8149.46C2 membrane targeting protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04740NO01G04740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04740.1NO01G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04740.1.cds1NO01G04740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04740.1.cds2NO01G04740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04740.1 ID=NO01G04740.1|Name=NO01G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
ATGTTACAATGCTCTTCCATCAGCTTGGTCGCTGTGTCTCTCCTCCTGTT
GCAGCTCCTTGCCAAAACCTCCCCCCAACCCCATCCTGAGTGCGGCCTTG
GAGAGACCCCGCTGTATATCCAAGTGCACGGCACAGATAAACTCACGGAA
TGCACCGATTACTTCGACGCCGTGGACCCTTACGCGGTCGTTACCGTCGG
CCAAGACCGCTACACCGTCTCCAAGGTCACCAAAACGATCAACAACGACG
CCGATCCCACCTGGGATCAAGTCCTAGACTATGGCTGCCAGGTAGGAAAC
GCCAAAATCGTTTTTCGCGTGCGGGATCAGGATTACTTCGGGGATGAAGC
CTGTCTCGGCCCACTCGGCATCGTTGGCCCGTGGCCCAAATCGGGCAAGC
GCCAAGTCATGTGCACCAGACCAGCGCCCACCGCCACCCACGGAAGCTCC
CCTGGGACGGGCTGCATCTCGTTCACCCTGTATTATGGTGCTGCTCTACC
TCCTATCATCATAGCATCAGACGGAGCCGTGACCGTCACTTCAGCAGCCG
AGGCCATGGCCCCCTCTCCCCCCTCCCCCCTCCCTTCCAAGCCCGACACC
CCTTCCTCCCCCTTACCCACGGTCACTAAGCGCCCAGCAAACACCACCAG
CACCCCCAAAGGCGTAGGCGAAAGTTCCGATCCGTCCATTCCCCCCACTC
CTCGTGCTCCCAGCCGCCCTCCTCCTCCTTCCGACCCCACGCCACCCTTT
GCGAATGTCTCTCGTCCCTCCCTCTCTCAAGGCCAGCGCAATGCCAGCCA
GCCTGCTGCTTCTGCTCAGGCCAGGGAACGCCCTATGGTTCAGGCTCCCT
CCCCCTTGGCTACTGGAACGGAGGGCGAGAAACGGAAGGAACATGACAGG
CAAAATGCGGCGAATGCAAGGAGAAAGTCCGCAGCCCTGGCTTTTGGGAT
TGTGGGGTTGCTTGCTGTTGCCGGCGTGGGGGTAGGGCTGTTGGTGAGTC
GACGACGGCGGCTGAGGAGGGAGCAACACGGGCAGGACTTGGCACTAGAT
GAGGAGGGGGGGATGCGACGGGGAGCGGCAGGAGACTCCACCCCGGGGTC
CGTGGCGGTGCTCTAAGAGGGGCGGGAGTGAGGAAAAAGGAGGACAAGGA
GGGAAGGGGGATGACGAGATGGGACGAGAATCACGACCCCTGATTCCGTG
TCGATGCTCTCAGAGGTGGGTGAGGAGGAGGAATAGAAATTCCAGAAAAG
GAGCGAGGCACGGAAAGAGGTGGATGGTGCAGACATATACATGACATGAG
CACATTTACATGTGGAAAAGAGAACACAAAGACATGTTGAAAAGAGAACG
AAGAAATGGATTGATGATAAGATTGATGAAGAAACAAAAGAAGAAGAAGC
ATAAGCAAAAGGCGCAGTAAACGCAGGAGAATGATGGTTGTCATGAGAGA
GGAAATGGAAGGATGAAGAAGGCTGTTGTGCGGCATAGGAGGAGAAAGAC
AGGTATGCCCAAGGCCCCTGAGTGTGCGTATGGGTTGGGTGCGAGAGCAC
AACCGCAAGAGCACCAGCCAAAAAAAGACAACGCAAGGTAGGGGGTGAAA
GATAGAGGAAAGATATGCACAAAGGGGGAGAGCAAAAGGGAGAGGCAAAG
AGGAAGAAAGGATACATACATGCTCAGAGGGCCACGAAAACGACCTCACA
TACACAAGACCAACTGACGGACAAACAAACGTCAGAAAGCGAGCGATGGA
CCAGCCATGATATAGAAAAAGTAAACAATTCAGGG
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protein sequence of NO01G04740.1

>NO01G04740.1-protein ID=NO01G04740.1-protein|Name=NO01G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MLQCSSISLVAVSLLLLQLLAKTSPQPHPECGLGETPLYIQVHGTDKLTE
CTDYFDAVDPYAVVTVGQDRYTVSKVTKTINNDADPTWDQVLDYGCQVGN
AKIVFRVRDQDYFGDEACLGPLGIVGPWPKSGKRQVMCTRPAPTATHGSS
PGTGCISFTLYYGAALPPIIIASDGAVTVTSAAEAMAPSPPSPLPSKPDT
PSSPLPTVTKRPANTTSTPKGVGESSDPSIPPTPRAPSRPPPPSDPTPPF
ANVSRPSLSQGQRNASQPAASAQARERPMVQAPSPLATGTEGEKRKEHDR
QNAANARRKSAALAFGIVGLLAVAGVGVGLLVSRRRRLRREQHGQDLALD
EEGGMRRGAAGDSTPGSVAVL*
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mRNA from alignment at chr1:1252652..1254631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04740.1 ID=NO01G04740.1|Name=NO01G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at chr1:1252652..1254631- (Nannochloropsis oceanica)
ATGTTACAATGCTCTTCCATCAGCTTGGTCGCTGTGTCTCTCCTCCTGTT
GCAGCTCCTTGCCAAAACCTCCCCCCAACCCCATCCTGAGTGCGGCCTTG
GAGAGACCCCGCTGTATATCCAAGTGCACGGCACAGATAAACTCACGGAA
TGCACCGATTACTTCGACGCCGTGGACCCTTACGCGGTCGTTACCGTCGG
CCAAGGTAAGTTAGTGTGTTAGGGTGTTGGACAGGACTCTTGACTCGCAC
CTCCCTAGCCCCCCGCACATTTGGAATCCGGGGGGTGTTGTAGTTAAATT
GCTACCCGCGATGCTTTCGATTTCCCCCATGACGACTCTCTTATCTTCAT
CTTATTCCTCAACCGCTCTTCCCTTCCTCCCCTCCCACTTTTTCGTCCAG
ACCGCTACACCGTCTCCAAGGTCACCAAAACGATCAACAACGACGCCGAT
CCCACCTGGGATCAAGTCCTAGACTATGGCTGCCAGGTAGGAAACGCCAA
AATCGTTTTTCGCGTGCGGGATCAGGATTACTTCGGGGATGAAGCCTGTC
TCGGCCCACTCGGCATCGTTGGCCCGTGGCCCAAATCGGGCAAGCGCCAA
GTCATGTGCACCAGACCAGCGCCCACCGCCACCCACGGAAGCTCCCCTGG
GACGGGCTGCATCTCGTTCACCCTGTATTATGGTGCTGCTCTACCTCCTA
TCATCATAGCATCAGACGGAGCCGTGACCGTCACTTCAGCAGCCGAGGCC
ATGGCCCCCTCTCCCCCCTCCCCCCTCCCTTCCAAGCCCGACACCCCTTC
CTCCCCCTTACCCACGGTCACTAAGCGCCCAGCAAACACCACCAGCACCC
CCAAAGGCGTAGGCGAAAGTTCCGATCCGTCCATTCCCCCCACTCCTCGT
GCTCCCAGCCGCCCTCCTCCTCCTTCCGACCCCACGCCACCCTTTGCGAA
TGTCTCTCGTCCCTCCCTCTCTCAAGGCCAGCGCAATGCCAGCCAGCCTG
CTGCTTCTGCTCAGGCCAGGGAACGCCCTATGGTTCAGGCTCCCTCCCCC
TTGGCTACTGGAACGGAGGGCGAGAAACGGAAGGAACATGACAGGCAAAA
TGCGGCGAATGCAAGGAGAAAGTCCGCAGCCCTGGCTTTTGGGATTGTGG
GGTTGCTTGCTGTTGCCGGCGTGGGGGTAGGGCTGTTGGTGAGTCGACGA
CGGCGGCTGAGGAGGGAGCAACACGGGCAGGACTTGGCACTAGATGAGGA
GGGGGGGATGCGACGGGGAGCGGCAGGAGACTCCACCCCGGGGTCCGTGG
CGGTGCTCTAAGAGGGGCGGGAGTGAGGAAAAAGGAGGACAAGGAGGGAA
GGGGGATGACGAGATGGGACGAGAATCACGACCCCTGATTCCGTGTCGAT
GCTCTCAGAGGTGGGTGAGGAGGAGGAATAGAAATTCCAGAAAAGGAGCG
AGGCACGGAAAGAGGTGGATGGTGCAGACATATACATGACATGAGCACAT
TTACATGTGGAAAAGAGAACACAAAGACATGTTGAAAAGAGAACGAAGAA
ATGGATTGATGATAAGATTGATGAAGAAACAAAAGAAGAAGAAGCATAAG
CAAAAGGCGCAGTAAACGCAGGAGAATGATGGTTGTCATGAGAGAGGAAA
TGGAAGGATGAAGAAGGCTGTTGTGCGGCATAGGAGGAGAAAGACAGGTA
TGCCCAAGGCCCCTGAGTGTGCGTATGGGTTGGGTGCGAGAGCACAACCG
CAAGAGCACCAGCCAAAAAAAGACAACGCAAGGTAGGGGGTGAAAGATAG
AGGAAAGATATGCACAAAGGGGGAGAGCAAAAGGGAGAGGCAAAGAGGAA
GAAAGGATACATACATGCTCAGAGGGCCACGAAAACGACCTCACATACAC
AAGACCAACTGACGGACAAACAAACGTCAGAAAGCGAGCGATGGACCAGC
CATGATATAGAAAAAGTAAACAATTCAGGG
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Coding sequence (CDS) from alignment at chr1:1252652..1254631-

>NO01G04740.1 ID=NO01G04740.1|Name=NO01G04740.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr1:1252652..1254631- (Nannochloropsis oceanica)
ATGTTACAATGCTCTTCCATCAGCTTGGTCGCTGTGTCTCTCCTCCTGTT
GCAGCTCCTTGCCAAAACCTCCCCCCAACCCCATCCTGAGTGCGGCCTTG
GAGAGACCCCGCTGTATATCCAAGTGCACGGCACAGATAAACTCACGGAA
TGCACCGATTACTTCGACGCCGTGGACCCTTACGCGGTCGTTACCGTCGG
CCAAGACCGCTACACCGTCTCCAAGGTCACCAAAACGATCAACAACGACG
CCGATCCCACCTGGGATCAAGTCCTAGACTATGGCTGCCAGGTAGGAAAC
GCCAAAATCGTTTTTCGCGTGCGGGATCAGGATTACTTCGGGGATGAAGC
CTGTCTCGGCCCACTCGGCATCGTTGGCCCGTGGCCCAAATCGGGCAAGC
GCCAAGTCATGTGCACCAGACCAGCGCCCACCGCCACCCACGGAAGCTCC
CCTGGGACGGGCTGCATCTCGTTCACCCTGTATTATGGTGCTGCTCTACC
TCCTATCATCATAGCATCAGACGGAGCCGTGACCGTCACTTCAGCAGCCG
AGGCCATGGCCCCCTCTCCCCCCTCCCCCCTCCCTTCCAAGCCCGACACC
CCTTCCTCCCCCTTACCCACGGTCACTAAGCGCCCAGCAAACACCACCAG
CACCCCCAAAGGCGTAGGCGAAAGTTCCGATCCGTCCATTCCCCCCACTC
CTCGTGCTCCCAGCCGCCCTCCTCCTCCTTCCGACCCCACGCCACCCTTT
GCGAATGTCTCTCGTCCCTCCCTCTCTCAAGGCCAGCGCAATGCCAGCCA
GCCTGCTGCTTCTGCTCAGGCCAGGGAACGCCCTATGGTTCAGGCTCCCT
CCCCCTTGGCTACTGGAACGGAGGGCGAGAAACGGAAGGAACATGACAGG
CAAAATGCGGCGAATGCAAGGAGAAAGTCCGCAGCCCTGGCTTTTGGGAT
TGTGGGGTTGCTTGCTGTTGCCGGCGTGGGGGTAGGGCTGTTGGTGAGTC
GACGACGGCGGCTGAGGAGGGAGCAACACGGGCAGGACTTGGCACTAGAT
GAGGAGGGGGGGATGCGACGGGGAGCGGCAGGAGACTCCACCCCGGGGTC
CGTGGCGGTGCTCTAA
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Synonyms
Publications