NO01G04720.1, NO01G04720.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04720.1
Unique Name	NO01G04720.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1713
Alignment location	chr1:1249613..1251325 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1249613..1251325 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G04720.1 vs.
Match: EWM29415.1 (Peptidase M22, O-sialoglycoprotein peptidase [Nannochloropsis gaditana])

HSP 1 Score: 657.9 bits (1696), Expect = 2.800e-185
Identity = 360/550 (65.45%), Postives = 412/550 (74.91%), Query Frame = 0

Query:    1 MLLRPPSSTLARTGLGGFCIAFRIPPLPRAAHAAFLPTIPTGRRDIMSPSSPISFFSSTPASSNEESSPRAPPTEHTGTSTTRRRKRSKSGAGGPKLSREFVGIAKATDTGRFRTYSADQFKKGASGLPVTSPERPYFTVLGIETSCDDTGVAVVRSDGVILGEALASQYQIHEQWGGVVPGLARDAHASVIDSMVQEALSKAGMASVGEVDAIGVTVGPGLEICLRVGCETAKGLAELHKKPFVAVHHLEAHCLMARLGQPVVEVEEVEEGAQVEGKKVTSPSACFPFLALLVSGGHCMILECANVGRYRVLGGTLDDALGEAYDKAARLLEVGSGAAGGPAMELLAREGDPTAVLLPVPMKGKKDLNFSYAGLKNAFRMAVTRVIESQRKGEGGGEKGGKLDHQTKADLAASFQSVAIEHLEDRLERAMKESEGRGIRTLAVVGGVAANHAIRTRLRALCEKRSVARMREVEEEKAWVEEMEGDGDAAAAAAIAVADKLPAWELVVPPPRLCTDNGVMVAWAAIEKLRLGFSDVLQGQDVHARWPFAN 551
            ML R  +  LAR GLG    + +          AF PT PT  +  M P++  +       S+    +P +       TS+TRRR+R  +G+G  K SR+FVG+AK TDTG++ ++SAD F + ASGLP TSPE P FTVLGIETSCDDTGVAVVRSDGVILGEALASQY+IHEQWGGVVPGLARDAHASVIDSMV+EAL KAGMASV EV A+GVTVGPGLEICLRVG ETAK LA    KPFVAVHHLEAHCLMAR GQP+   E  EE A         P   FPFLALLVSGGHCM+LEC  VGRYR LGGTLDDALGEAYDKAARLL++G+GAAGGPAME LAREG+P AV+LPVPM+GKK+LNFSYAGLKNAFRMAVTR+ E+   GE         D +TKADLAASFQ VAI+HLE+RL  AMKESE RG+ TLAVVGGVA+N AIR RL+ LCEKRS+AR  E E+E+ W    E + +      + V   LP WELVVPPPRLCTDNGVMVAWAAIEKLRLG+SDV++G+DVHARWPFA+
Sbjct:   19 MLSRISAFQLARPGLGWMEASTKRISWS-LTRKAFFPTTPTAAKAGMDPATHSAVNPDGQTSTGTSQAPAS------ATSSTRRRRRP-AGSGASKASRDFVGMAKGTDTGQYPSFSADNFVQAASGLPTTSPEDPVFTVLGIETSCDDTGVAVVRSDGVILGEALASQYKIHEQWGGVVPGLARDAHASVIDSMVEEALKKAGMASVAEVGAVGVTVGPGLEICLRVGTETAKALATTFHKPFVAVHHLEAHCLMARFGQPLDSREPKEEAAGTSASSPIPPQTRFPFLALLVSGGHCMLLECWGVGRYRTLGGTLDDALGEAYDKAARLLKIGTGAAGGPAMERLAREGNPKAVVLPVPMRGKKNLNFSYAGLKNAFRMAVTRLKEALNLGE-----EEDFDPKTKADLAASFQHVAIQHLEERLTLAMKESERRGVHTLAVVGGVASNQAIRARLQVLCEKRSLARRLEKEQERIW---DEANSENKGGGTMEVEAPLPPWELVVPPPRLCTDNGVMVAWAAIEKLRLGYSDVVEGRDVHARWPFAS 552

The following BLAST results are available for this feature:

BLAST of NO01G04720.1 vs.

BLAST of NO01G04720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29415.1	2.800e-185	65.45	Peptidase M22, O-sialoglycoprotein peptidase [Nann...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04720	NO01G04720	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04720.1	NO01G04720.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04720.1.cds1	NO01G04720.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1249613..1251325-
coding sequence from alignment at chr1:1249613..1251325-

mRNA sequence

>NO01G04720.1 ID=NO01G04720.1|Name=NO01G04720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
ATGCTGCTGCGCCCCCCAAGCTCGACGCTGGCGCGGACGGGGCTCGGTGG
CTTTTGTATCGCATTCCGGATACCACCACTACCGCGCGCCGCCCATGCAG
CATTCTTGCCCACCATTCCCACGGGACGAAGGGATATAATGTCTCCTTCG
TCTCCCATCTCCTTTTTTTCATCGACTCCTGCCTCTTCCAACGAAGAAAG
TAGCCCAAGAGCCCCACCTACTGAACACACTGGCACTAGCACGACACGCC
GACGTAAACGATCCAAGAGCGGCGCGGGCGGCCCTAAGCTCTCCCGTGAG
TTTGTGGGCATCGCAAAGGCTACCGACACCGGTCGTTTCCGGACGTATTC
AGCCGATCAATTCAAAAAAGGCGCATCTGGCTTGCCTGTCACCAGTCCTG
AGCGCCCTTATTTTACTGTGTTGGGTATTGAGACGAGCTGTGATGACACT
GGTGTGGCCGTGGTGAGGTCCGATGGAGTTATCCTCGGAGAAGCCCTCGC
CTCTCAATACCAGATTCATGAGCAATGGGGTGGCGTGGTACCTGGATTGG
CGAGAGACGCACATGCGTCCGTGATTGATAGCATGGTGCAGGAGGCGTTG
AGCAAGGCAGGCATGGCGTCGGTAGGGGAGGTTGATGCGATAGGGGTGAC
TGTTGGGCCGGGGCTGGAGATATGTTTAAGGGTGGGGTGTGAGACGGCCA
AGGGGCTGGCAGAGCTACATAAAAAACCATTTGTGGCCGTGCATCACTTG
GAGGCGCATTGTCTGATGGCGCGATTGGGGCAGCCGGTGGTCGAGGTCGA
GGAGGTGGAGGAGGGGGCGCAGGTGGAAGGGAAGAAGGTCACTTCGCCTT
CGGCTTGCTTTCCTTTTCTGGCTTTGCTTGTCTCAGGGGGACATTGTATG
ATTCTAGAGTGTGCGAATGTGGGTCGATACCGAGTCCTTGGGGGCACATT
AGACGATGCATTGGGAGAGGCATACGACAAAGCAGCGCGACTGCTGGAGG
TGGGCTCGGGGGCTGCCGGTGGACCTGCCATGGAGCTTTTAGCGAGGGAA
GGAGACCCTACCGCGGTACTATTACCAGTCCCTATGAAGGGAAAGAAGGA
TTTGAATTTTTCGTATGCCGGTTTGAAGAATGCGTTCAGAATGGCCGTTA
CAAGGGTGATCGAATCCCAGAGGAAGGGCGAGGGAGGGGGGGAGAAAGGG
GGGAAGTTGGATCACCAGACGAAAGCGGACTTGGCGGCATCGTTTCAGAG
TGTGGCAATTGAACACCTGGAGGATCGGTTGGAAAGGGCGATGAAGGAGA
GTGAGGGAAGGGGGATTCGAACATTGGCGGTGGTGGGAGGAGTGGCGGCG
AATCACGCGATACGGACACGACTGCGGGCCTTGTGTGAAAAGAGGAGTGT
AGCGAGGATGAGAGAGGTGGAAGAGGAGAAGGCATGGGTGGAGGAAATGG
AAGGTGATGGAGATGCTGCTGCTGCGGCCGCTATTGCTGTTGCGGATAAG
TTGCCTGCGTGGGAGTTGGTGGTGCCTCCGCCACGATTGTGCACAGACAA
TGGGGTAATGGTTGCGTGGGCGGCAATTGAGAAACTGAGATTGGGCTTCT
CGGATGTCTTGCAAGGACAGGACGTGCATGCGCGGTGGCCGTTTGCCAAT
TTGGATAAGAGGAAAGAAGATGAGATGGAGGAGCTGGTGGAGGGAGGAGG
GGGTAGGCCATGA

protein sequence of NO01G04720.1

>NO01G04720.1-protein ID=NO01G04720.1-protein|Name=NO01G04720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MLLRPPSSTLARTGLGGFCIAFRIPPLPRAAHAAFLPTIPTGRRDIMSPS
SPISFFSSTPASSNEESSPRAPPTEHTGTSTTRRRKRSKSGAGGPKLSRE
FVGIAKATDTGRFRTYSADQFKKGASGLPVTSPERPYFTVLGIETSCDDT
GVAVVRSDGVILGEALASQYQIHEQWGGVVPGLARDAHASVIDSMVQEAL
SKAGMASVGEVDAIGVTVGPGLEICLRVGCETAKGLAELHKKPFVAVHHL
EAHCLMARLGQPVVEVEEVEEGAQVEGKKVTSPSACFPFLALLVSGGHCM
ILECANVGRYRVLGGTLDDALGEAYDKAARLLEVGSGAAGGPAMELLARE
GDPTAVLLPVPMKGKKDLNFSYAGLKNAFRMAVTRVIESQRKGEGGGEKG
GKLDHQTKADLAASFQSVAIEHLEDRLERAMKESEGRGIRTLAVVGGVAA
NHAIRTRLRALCEKRSVARMREVEEEKAWVEEMEGDGDAAAAAAIAVADK
LPAWELVVPPPRLCTDNGVMVAWAAIEKLRLGFSDVLQGQDVHARWPFAN
LDKRKEDEMEELVEGGGGRP*

mRNA from alignment at chr1:1249613..1251325-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04720.1 ID=NO01G04720.1|Name=NO01G04720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp|location=Sequence derived from alignment at chr1:1249613..1251325- (Nannochloropsis oceanica)
ATGCTGCTGCGCCCCCCAAGCTCGACGCTGGCGCGGACGGGGCTCGGTGG
CTTTTGTATCGCATTCCGGATACCACCACTACCGCGCGCCGCCCATGCAG
CATTCTTGCCCACCATTCCCACGGGACGAAGGGATATAATGTCTCCTTCG
TCTCCCATCTCCTTTTTTTCATCGACTCCTGCCTCTTCCAACGAAGAAAG
TAGCCCAAGAGCCCCACCTACTGAACACACTGGCACTAGCACGACACGCC
GACGTAAACGATCCAAGAGCGGCGCGGGCGGCCCTAAGCTCTCCCGTGAG
TTTGTGGGCATCGCAAAGGCTACCGACACCGGTCGTTTCCGGACGTATTC
AGCCGATCAATTCAAAAAAGGCGCATCTGGCTTGCCTGTCACCAGTCCTG
AGCGCCCTTATTTTACTGTGTTGGGTATTGAGACGAGCTGTGATGACACT
GGTGTGGCCGTGGTGAGGTCCGATGGAGTTATCCTCGGAGAAGCCCTCGC
CTCTCAATACCAGATTCATGAGCAATGGGGTGGCGTGGTACCTGGATTGG
CGAGAGACGCACATGCGTCCGTGATTGATAGCATGGTGCAGGAGGCGTTG
AGCAAGGCAGGCATGGCGTCGGTAGGGGAGGTTGATGCGATAGGGGTGAC
TGTTGGGCCGGGGCTGGAGATATGTTTAAGGGTGGGGTGTGAGACGGCCA
AGGGGCTGGCAGAGCTACATAAAAAACCATTTGTGGCCGTGCATCACTTG
GAGGCGCATTGTCTGATGGCGCGATTGGGGCAGCCGGTGGTCGAGGTCGA
GGAGGTGGAGGAGGGGGCGCAGGTGGAAGGGAAGAAGGTCACTTCGCCTT
CGGCTTGCTTTCCTTTTCTGGCTTTGCTTGTCTCAGGGGGACATTGTATG
ATTCTAGAGTGTGCGAATGTGGGTCGATACCGAGTCCTTGGGGGCACATT
AGACGATGCATTGGGAGAGGCATACGACAAAGCAGCGCGACTGCTGGAGG
TGGGCTCGGGGGCTGCCGGTGGACCTGCCATGGAGCTTTTAGCGAGGGAA
GGAGACCCTACCGCGGTACTATTACCAGTCCCTATGAAGGGAAAGAAGGA
TTTGAATTTTTCGTATGCCGGTTTGAAGAATGCGTTCAGAATGGCCGTTA
CAAGGGTGATCGAATCCCAGAGGAAGGGCGAGGGAGGGGGGGAGAAAGGG
GGGAAGTTGGATCACCAGACGAAAGCGGACTTGGCGGCATCGTTTCAGAG
TGTGGCAATTGAACACCTGGAGGATCGGTTGGAAAGGGCGATGAAGGAGA
GTGAGGGAAGGGGGATTCGAACATTGGCGGTGGTGGGAGGAGTGGCGGCG
AATCACGCGATACGGACACGACTGCGGGCCTTGTGTGAAAAGAGGAGTGT
AGCGAGGATGAGAGAGGTGGAAGAGGAGAAGGCATGGGTGGAGGAAATGG
AAGGTGATGGAGATGCTGCTGCTGCGGCCGCTATTGCTGTTGCGGATAAG
TTGCCTGCGTGGGAGTTGGTGGTGCCTCCGCCACGATTGTGCACAGACAA
TGGGGTAATGGTTGCGTGGGCGGCAATTGAGAAACTGAGATTGGGCTTCT
CGGATGTCTTGCAAGGACAGGACGTGCATGCGCGGTGGCCGTTTGCCAAT
TTGGATAAGAGGAAAGAAGATGAGATGGAGGAGCTGGTGGAGGGAGGAGG
GGGTAGGCCATGA

Coding sequence (CDS) from alignment at chr1:1249613..1251325-

>NO01G04720.1 ID=NO01G04720.1|Name=NO01G04720.1|organism=Nannochloropsis oceanica|type=CDS|length=1713bp|location=Sequence derived from alignment at chr1:1249613..1251325- (Nannochloropsis oceanica)
ATGCTGCTGCGCCCCCCAAGCTCGACGCTGGCGCGGACGGGGCTCGGTGG
CTTTTGTATCGCATTCCGGATACCACCACTACCGCGCGCCGCCCATGCAG
CATTCTTGCCCACCATTCCCACGGGACGAAGGGATATAATGTCTCCTTCG
TCTCCCATCTCCTTTTTTTCATCGACTCCTGCCTCTTCCAACGAAGAAAG
TAGCCCAAGAGCCCCACCTACTGAACACACTGGCACTAGCACGACACGCC
GACGTAAACGATCCAAGAGCGGCGCGGGCGGCCCTAAGCTCTCCCGTGAG
TTTGTGGGCATCGCAAAGGCTACCGACACCGGTCGTTTCCGGACGTATTC
AGCCGATCAATTCAAAAAAGGCGCATCTGGCTTGCCTGTCACCAGTCCTG
AGCGCCCTTATTTTACTGTGTTGGGTATTGAGACGAGCTGTGATGACACT
GGTGTGGCCGTGGTGAGGTCCGATGGAGTTATCCTCGGAGAAGCCCTCGC
CTCTCAATACCAGATTCATGAGCAATGGGGTGGCGTGGTACCTGGATTGG
CGAGAGACGCACATGCGTCCGTGATTGATAGCATGGTGCAGGAGGCGTTG
AGCAAGGCAGGCATGGCGTCGGTAGGGGAGGTTGATGCGATAGGGGTGAC
TGTTGGGCCGGGGCTGGAGATATGTTTAAGGGTGGGGTGTGAGACGGCCA
AGGGGCTGGCAGAGCTACATAAAAAACCATTTGTGGCCGTGCATCACTTG
GAGGCGCATTGTCTGATGGCGCGATTGGGGCAGCCGGTGGTCGAGGTCGA
GGAGGTGGAGGAGGGGGCGCAGGTGGAAGGGAAGAAGGTCACTTCGCCTT
CGGCTTGCTTTCCTTTTCTGGCTTTGCTTGTCTCAGGGGGACATTGTATG
ATTCTAGAGTGTGCGAATGTGGGTCGATACCGAGTCCTTGGGGGCACATT
AGACGATGCATTGGGAGAGGCATACGACAAAGCAGCGCGACTGCTGGAGG
TGGGCTCGGGGGCTGCCGGTGGACCTGCCATGGAGCTTTTAGCGAGGGAA
GGAGACCCTACCGCGGTACTATTACCAGTCCCTATGAAGGGAAAGAAGGA
TTTGAATTTTTCGTATGCCGGTTTGAAGAATGCGTTCAGAATGGCCGTTA
CAAGGGTGATCGAATCCCAGAGGAAGGGCGAGGGAGGGGGGGAGAAAGGG
GGGAAGTTGGATCACCAGACGAAAGCGGACTTGGCGGCATCGTTTCAGAG
TGTGGCAATTGAACACCTGGAGGATCGGTTGGAAAGGGCGATGAAGGAGA
GTGAGGGAAGGGGGATTCGAACATTGGCGGTGGTGGGAGGAGTGGCGGCG
AATCACGCGATACGGACACGACTGCGGGCCTTGTGTGAAAAGAGGAGTGT
AGCGAGGATGAGAGAGGTGGAAGAGGAGAAGGCATGGGTGGAGGAAATGG
AAGGTGATGGAGATGCTGCTGCTGCGGCCGCTATTGCTGTTGCGGATAAG
TTGCCTGCGTGGGAGTTGGTGGTGCCTCCGCCACGATTGTGCACAGACAA
TGGGGTAATGGTTGCGTGGGCGGCAATTGAGAAACTGAGATTGGGCTTCT
CGGATGTCTTGCAAGGACAGGACGTGCATGCGCGGTGGCCGTTTGCCAAT
TTGGATAAGAGGAAAGAAGATGAGATGGAGGAGCTGGTGGAGGGAGGAGG
GGGTAGGCCATGA

Synonyms

Publications