NO01G04470.1, NO01G04470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04470.1
Unique NameNO01G04470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1948
Alignment locationchr1:1183316..1185333 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1183316..1185333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04470.1 vs.
Match: EWM29387.1 (Interferon-related developmental regulator domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 528.5 bits (1360), Expect = 2.000e-146
Identity = 273/400 (68.25%), Postives = 327/400 (81.75%), Query Frame = 0 
Query:   35 SFLSQEAVEHPASAIVDDSVAGSNSRVASPAYENEADFAEVLEKLAEKRTSTRETGLKELTAGLRSYAFADAAQANREIIFSTLISLIRRGGEKEGVLCAEALGLMFLLIGPEEDEIFMQIRGPLEYLVTRGQHEEVRVEAARALAMGSFICNTEEEVTLANLSFFQGLFSGESEGERASEELKAAGVDSWALLATVAPNGYHTHELRVQLLEELLGLLDASSAELKVAAGEGLALLREYWRQVPVASHDVSAEEEDLLESIVDRLRDMAREGSKRMSRKDKKAQRASFREVYAAVAEGQPPEEVINFRTRSFRLTSWVKMKQLESFRDCLQGGLLAAFGTNPVIHDVLEIDPASFETPSERRMVDKNSELGKWRTTTRSRNRRTRESAKHHFTEDGEDS 435
            SFLSQE  E    A V+++ A      AS    N  DFA++LEKL EKRT+ RE  L+EL AGLRSY F D A ANRE +FS+L+ L+RR  E EGVLCAEALG+M LLIGPEEDEIF  +R PLE+++TRGQ E +R+EA RALA+GSFICNTEEE TLA+L+FF+ LF+GESEG RASEELKAAGVD+W+LL TVAP GY+THE R  LLE  L LLDASSA+L+VAAGE +ALLRE+WRQ  +A HDVSA+EE++++SIVDRL+DMAREGSKRMSRKDKKAQRASFRE+ +AV +GQ PEEVI++RTRSFRLTSWVKMKQ+E+ RDCLQGG L A   N VIHD+ ++DP +F+ P ER +V KNSELG+WRTTTRSRNRR+RE AKHHFTE+GED+
Sbjct:    2 SFLSQETFEASTPAGVEETTAPGAGAAASS--RNNGDFADLLEKLNEKRTTAREDCLRELIAGLRSYTFVDQAIANRESVFSSLVGLLRRSRETEGVLCAEALGMMMLLIGPEEDEIFNLVRAPLEFVITRGQSERMRIEATRALALGSFICNTEEERTLAHLAFFEALFTGESEGGRASEELKAAGVDAWSLLFTVAPRGYNTHESRALLLENFLHLLDASSADLRVAAGEAIALLREHWRQEGLAVHDVSADEEEVVDSIVDRLQDMAREGSKRMSRKDKKAQRASFREICSAVVDGQRPEEVISYRTRSFRLTSWVKMKQVEALRDCLQGGFLTALAQNTVIHDIFDLDPTAFDVPVERSVVAKNSELGRWRTTTRSRNRRSREKAKHHFTEEGEDA 399
The following BLAST results are available for this feature:
BLAST of NO01G04470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29387.12.000e-14668.25Interferon-related developmental regulator domain-... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04470NO01G04470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04470.1NO01G04470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04470.1.cds1NO01G04470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04470.1.cds2NO01G04470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04470.1 ID=NO01G04470.1|Name=NO01G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1948bp
CGTTCTCGGGCAACTTCAACCCCAAAATCAACATTATCCCATGCGAAGCT
ACCCAGCAGCAAAAGCACGTGGTGATAGTGCCCTGTTTACTGTTCATGGT
CTATAAAGACATCAAACACCCACATGAACACCTTGAAAATCATGCCCCGT
TCCTTCCGACAACACAGACCGTAATAATCTGCGGAAGTCTTCCCCTTCCC
TGTGACCTCCTCTCCCAAACCTCAAGCCGCCAACCAAGACGCCAAAGGCA
TGGGCAAGAAAAGTGCGCGTGCCCTGGCCGCGGCAGGCAAAAAAGGAAAG
GGCGCAGGATTGACAAGTGACGATGAACGCGAAAGCGTTACCTCTGAGGC
CTCATTCCTCTCCCAAGAGGCTGTGGAGCATCCCGCTTCTGCGATCGTGG
ACGATTCGGTCGCAGGTTCAAACAGTAGAGTCGCTTCTCCTGCTTATGAG
AACGAGGCGGATTTTGCTGAGGTGCTTGAAAAGCTGGCGGAGAAACGAAC
GTCGACCCGCGAGACTGGCTTGAAGGAGTTGACTGCAGGGCTTCGCTCGT
ACGCATTTGCCGATGCGGCGCAGGCAAACCGCGAAATAATCTTCTCGACT
TTGATTAGTCTGATCCGCCGGGGTGGGGAGAAGGAGGGTGTGTTGTGTGC
TGAGGCCTTGGGGTTGATGTTTTTGTTGATTGGACCGGAGGAAGACGAGA
TTTTCATGCAGATCCGCGGACCCTTGGAATATCTAGTGACGCGCGGGCAG
CATGAAGAGGTGAGGGTGGAGGCTGCACGAGCTTTGGCGATGGGGTCATT
TATTTGTAATACGGAGGAGGAGGTGACGTTGGCGAACCTGTCGTTTTTCC
AAGGCTTATTTTCGGGTGAAAGCGAGGGAGAAAGGGCCTCCGAAGAGCTC
AAGGCTGCGGGCGTCGATTCTTGGGCACTTTTAGCGACTGTTGCACCTAA
TGGCTACCACACGCATGAATTAAGGGTTCAGTTGCTAGAGGAGCTGCTGG
GACTGCTGGATGCTTCGTCGGCTGAGTTGAAGGTGGCGGCGGGGGAGGGG
TTGGCTTTGCTGCGTGAGTACTGGCGCCAGGTCCCTGTGGCCTCTCATGA
TGTATCGGCGGAGGAGGAGGATTTGCTGGAAAGTATTGTGGATAGATTGC
GGGACATGGCTAGAGAGGGGAGTAAACGGATGAGTCGAAAAGATAAGAAA
GCGCAGAGGGCGTCGTTTCGTGAGGTATACGCGGCAGTGGCGGAGGGACA
GCCTCCAGAGGAGGTGATTAATTTTAGGACGCGGAGCTTTCGGTTGACAA
GTTGGGTGAAGATGAAGCAGTTAGAATCGTTTCGAGACTGTCTACAGGGG
GGCTTGTTGGCGGCTTTTGGGACGAACCCGGTAATTCACGATGTGCTGGA
AATCGACCCTGCGAGCTTCGAGACGCCGTCGGAGAGGAGAATGGTTGATA
AAAACAGCGAATTGGGAAAGTGGAGGACGACGACCCGCTCCAGGAATCGT
CGGACAAGAGAGAGTGCTAAGCATCATTTTACGGAGGATGGGGAGGATAG
TTAGAGGATTTGGGCGGTGGGGAGGTAGGTAAGTTTTAGAGAGGTGGAAG
AGGGAAATGAGGGTAGTGACGGGAGAATGAAGGGGAGGAGAGATGTTTCA
GGGAGCGCTGGGTTGAGAAGTCCAAGCGGTGATGAGTCAAAAATCATATA
GATTGGTAGGTGTAGAGTTGTGCATGTGCTCGGACATTTGCGTGCTGATG
TACGTGCCTGCGGTATGCACAAGAAAAAAGGGGACGAGCGGGGGGGAAGG
TTCTAGAGACCAGTATGAGGAAGAGACGAGATACAGTTGACTCACTACAG
TAGTTCTCTTCCTAGCTTTCACAGAAAGACCTGAAAAGGTTACGACAAAG
ACGTAGTGCGTAACAACAAATAAAGAAAAGAACACTGGGAAACTCTGA
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protein sequence of NO01G04470.1

>NO01G04470.1-protein ID=NO01G04470.1-protein|Name=NO01G04470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MGKKSARALAAAGKKGKGAGLTSDDERESVTSEASFLSQEAVEHPASAIV
DDSVAGSNSRVASPAYENEADFAEVLEKLAEKRTSTRETGLKELTAGLRS
YAFADAAQANREIIFSTLISLIRRGGEKEGVLCAEALGLMFLLIGPEEDE
IFMQIRGPLEYLVTRGQHEEVRVEAARALAMGSFICNTEEEVTLANLSFF
QGLFSGESEGERASEELKAAGVDSWALLATVAPNGYHTHELRVQLLEELL
GLLDASSAELKVAAGEGLALLREYWRQVPVASHDVSAEEEDLLESIVDRL
RDMAREGSKRMSRKDKKAQRASFREVYAAVAEGQPPEEVINFRTRSFRLT
SWVKMKQLESFRDCLQGGLLAAFGTNPVIHDVLEIDPASFETPSERRMVD
KNSELGKWRTTTRSRNRRTRESAKHHFTEDGEDS*
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mRNA from alignment at chr1:1183316..1185333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04470.1 ID=NO01G04470.1|Name=NO01G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2018bp|location=Sequence derived from alignment at chr1:1183316..1185333- (Nannochloropsis oceanica)
CGTTCTCGGGCAACTTCAACCCCAAAATCAACATTATCCCATGCGAAGCT
ACCCAGCAGCAAAAGCACGTGGTGATAGTGCCCTGTTTACTGTTCATGGT
CTATAAAGACATCAAACACCCACATGAACACCTTGAAAATCATGCCCCGT
TCCTTCCGACAACACAGACCGTAATAATCTGCGGAAGTCTTCCCCTTCCC
TGTGACCTCCTCTCCCAAACCTCAAGCCGCCAACCAAGACGCCAAAGGCA
TGGGCAAGAAAAGTAAGTACCGTCGTTACGTGGCACAATGCCTGTATGTC
TTGAGCTGGCATACCATCTCTCTTCCCTTTAGGTGCGCGTGCCCTGGCCG
CGGCAGGCAAAAAAGGAAAGGGCGCAGGATTGACAAGTGACGATGAACGC
GAAAGCGTTACCTCTGAGGCCTCATTCCTCTCCCAAGAGGCTGTGGAGCA
TCCCGCTTCTGCGATCGTGGACGATTCGGTCGCAGGTTCAAACAGTAGAG
TCGCTTCTCCTGCTTATGAGAACGAGGCGGATTTTGCTGAGGTGCTTGAA
AAGCTGGCGGAGAAACGAACGTCGACCCGCGAGACTGGCTTGAAGGAGTT
GACTGCAGGGCTTCGCTCGTACGCATTTGCCGATGCGGCGCAGGCAAACC
GCGAAATAATCTTCTCGACTTTGATTAGTCTGATCCGCCGGGGTGGGGAG
AAGGAGGGTGTGTTGTGTGCTGAGGCCTTGGGGTTGATGTTTTTGTTGAT
TGGACCGGAGGAAGACGAGATTTTCATGCAGATCCGCGGACCCTTGGAAT
ATCTAGTGACGCGCGGGCAGCATGAAGAGGTGAGGGTGGAGGCTGCACGA
GCTTTGGCGATGGGGTCATTTATTTGTAATACGGAGGAGGAGGTGACGTT
GGCGAACCTGTCGTTTTTCCAAGGCTTATTTTCGGGTGAAAGCGAGGGAG
AAAGGGCCTCCGAAGAGCTCAAGGCTGCGGGCGTCGATTCTTGGGCACTT
TTAGCGACTGTTGCACCTAATGGCTACCACACGCATGAATTAAGGGTTCA
GTTGCTAGAGGAGCTGCTGGGACTGCTGGATGCTTCGTCGGCTGAGTTGA
AGGTGGCGGCGGGGGAGGGGTTGGCTTTGCTGCGTGAGTACTGGCGCCAG
GTCCCTGTGGCCTCTCATGATGTATCGGCGGAGGAGGAGGATTTGCTGGA
AAGTATTGTGGATAGATTGCGGGACATGGCTAGAGAGGGGAGTAAACGGA
TGAGTCGAAAAGATAAGAAAGCGCAGAGGGCGTCGTTTCGTGAGGTATAC
GCGGCAGTGGCGGAGGGACAGCCTCCAGAGGAGGTGATTAATTTTAGGAC
GCGGAGCTTTCGGTTGACAAGTTGGGTGAAGATGAAGCAGTTAGAATCGT
TTCGAGACTGTCTACAGGGGGGCTTGTTGGCGGCTTTTGGGACGAACCCG
GTAATTCACGATGTGCTGGAAATCGACCCTGCGAGCTTCGAGACGCCGTC
GGAGAGGAGAATGGTTGATAAAAACAGCGAATTGGGAAAGTGGAGGACGA
CGACCCGCTCCAGGAATCGTCGGACAAGAGAGAGTGCTAAGCATCATTTT
ACGGAGGATGGGGAGGATAGTTAGAGGATTTGGGCGGTGGGGAGGTAGGT
AAGTTTTAGAGAGGTGGAAGAGGGAAATGAGGGTAGTGACGGGAGAATGA
AGGGGAGGAGAGATGTTTCAGGGAGCGCTGGGTTGAGAAGTCCAAGCGGT
GATGAGTCAAAAATCATATAGATTGGTAGGTGTAGAGTTGTGCATGTGCT
CGGACATTTGCGTGCTGATGTACGTGCCTGCGGTATGCACAAGAAAAAAG
GGGACGAGCGGGGGGGAAGGTTCTAGAGACCAGTATGAGGAAGAGACGAG
ATACAGTTGACTCACTACAGTAGTTCTCTTCCTAGCTTTCACAGAAAGAC
CTGAAAAGGTTACGACAAAGACGTAGTGCGTAACAACAAATAAAGAAAAG
AACACTGGGAAACTCTGA
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Coding sequence (CDS) from alignment at chr1:1183316..1185333-

>NO01G04470.1 ID=NO01G04470.1|Name=NO01G04470.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr1:1183316..1185333- (Nannochloropsis oceanica)
ATGGGCAAGAAAAGTGCGCGTGCCCTGGCCGCGGCAGGCAAAAAAGGAAA
GGGCGCAGGATTGACAAGTGACGATGAACGCGAAAGCGTTACCTCTGAGG
CCTCATTCCTCTCCCAAGAGGCTGTGGAGCATCCCGCTTCTGCGATCGTG
GACGATTCGGTCGCAGGTTCAAACAGTAGAGTCGCTTCTCCTGCTTATGA
GAACGAGGCGGATTTTGCTGAGGTGCTTGAAAAGCTGGCGGAGAAACGAA
CGTCGACCCGCGAGACTGGCTTGAAGGAGTTGACTGCAGGGCTTCGCTCG
TACGCATTTGCCGATGCGGCGCAGGCAAACCGCGAAATAATCTTCTCGAC
TTTGATTAGTCTGATCCGCCGGGGTGGGGAGAAGGAGGGTGTGTTGTGTG
CTGAGGCCTTGGGGTTGATGTTTTTGTTGATTGGACCGGAGGAAGACGAG
ATTTTCATGCAGATCCGCGGACCCTTGGAATATCTAGTGACGCGCGGGCA
GCATGAAGAGGTGAGGGTGGAGGCTGCACGAGCTTTGGCGATGGGGTCAT
TTATTTGTAATACGGAGGAGGAGGTGACGTTGGCGAACCTGTCGTTTTTC
CAAGGCTTATTTTCGGGTGAAAGCGAGGGAGAAAGGGCCTCCGAAGAGCT
CAAGGCTGCGGGCGTCGATTCTTGGGCACTTTTAGCGACTGTTGCACCTA
ATGGCTACCACACGCATGAATTAAGGGTTCAGTTGCTAGAGGAGCTGCTG
GGACTGCTGGATGCTTCGTCGGCTGAGTTGAAGGTGGCGGCGGGGGAGGG
GTTGGCTTTGCTGCGTGAGTACTGGCGCCAGGTCCCTGTGGCCTCTCATG
ATGTATCGGCGGAGGAGGAGGATTTGCTGGAAAGTATTGTGGATAGATTG
CGGGACATGGCTAGAGAGGGGAGTAAACGGATGAGTCGAAAAGATAAGAA
AGCGCAGAGGGCGTCGTTTCGTGAGGTATACGCGGCAGTGGCGGAGGGAC
AGCCTCCAGAGGAGGTGATTAATTTTAGGACGCGGAGCTTTCGGTTGACA
AGTTGGGTGAAGATGAAGCAGTTAGAATCGTTTCGAGACTGTCTACAGGG
GGGCTTGTTGGCGGCTTTTGGGACGAACCCGGTAATTCACGATGTGCTGG
AAATCGACCCTGCGAGCTTCGAGACGCCGTCGGAGAGGAGAATGGTTGAT
AAAAACAGCGAATTGGGAAAGTGGAGGACGACGACCCGCTCCAGGAATCG
TCGGACAAGAGAGAGTGCTAAGCATCATTTTACGGAGGATGGGGAGGATA
GTTAG
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Synonyms
Publications