NO01G04340.1, NO01G04340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04340.1
Unique NameNO01G04340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2736
Alignment locationchr1:1159592..1162752 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1159592..1162752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04340.1 vs.
Match: XP_005854232.1 (peptidyl-prolyl cis-trans isomerase fkbp2-like protein [Nannochloropsis gaditana CCMP526]; EKU22123.1 peptidyl-prolyl cis-trans isomerase fkbp2-like protein [Nannochloropsis gaditana CCMP526]; EWM29373.1 peptidyl-prolyl cis-trans isomerase, FKBP-type [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.100e-68
Identity = 125/149 (83.89%), Postives = 138/149 (92.62%), Query Frame = 0 
Query:   67 MYRKVFFITIVALVALTASAKQGDGVDLDPEEKVRIGVKFRPEKCDVKSKKGDKLSMHYTGTLYKDGSKFDSSLDRNQPFEFTLGQGQVIKGWDNGLINMCPGEKRRLTIPASHGYGDRGAGAKIPGGATLVFDVELLGITSPDSGKEF 216
            M R++FF+T+ A+V LTASAKQGDGVDLDP EK+R+GVKFRP+ CD+KSKKGD LSMHYTGTLYKDGSKFDSSLDRNQPFEFTLGQGQVIKGWDNGL+NMC GEKRRLTIP+S GYGDRGAGAKIPGGATLVF+VELLGI + D GKEF
Sbjct:    1 MLRRLFFLTLSAVVVLTASAKQGDGVDLDPNEKLRVGVKFRPDSCDIKSKKGDMLSMHYTGTLYKDGSKFDSSLDRNQPFEFTLGQGQVIKGWDNGLLNMCVGEKRRLTIPSSLGYGDRGAGAKIPGGATLVFEVELLGINNSDKGKEF 149
The following BLAST results are available for this feature:
BLAST of NO01G04340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854232.11.100e-6883.89peptidyl-prolyl cis-trans isomerase fkbp2-like pro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04340NO01G04340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04340.1NO01G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04340.1.cds1NO01G04340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04340.1.cds2NO01G04340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04340.1.cds3NO01G04340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04340.1.cds4NO01G04340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04340.1 ID=NO01G04340.1|Name=NO01G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2736bp
CCGTTTGAAATGGAAGAGGAAGAAGAGGGCGAAGGAGGGGCAGAACGTCT
TGCTTTCTCCAACAACACCGCCACGGTCCGTCATACAGGGCAACCCAAAA
TGGCATGGCTGTCATCTTGGGCCGCAAGCCTGGCCTTAAAATTCTTTCTT
CTCACCAGCATCGGCCCTTTCCTCGCCCCTACCCATCGCAGGCAGCACCA
AAGCACCATGTACCGCAAGGTCTTCTTCATAACCATCGTCGCCCTTGTGG
CCCTGACCGCGTCTGCCAAGCAAGGCGACGGCGTTGACCTGGACCCTGAG
GAGAAAGTGCGCATAGGCGTCAAGTTTCGCCCTGAGAAGTGCGACGTTAA
GTCCAAGAAAGGCGACAAACTGTCAATGCACTATACGGGCACCCTTTACA
AGGATGGGAGCAAGTTCGACTCGAGCCTGGACCGCAACCAGCCCTTTGAA
TTCACCTTGGGCCAAGGCCAGGTCATCAAGGGATGGGACAACGGCCTCAT
TAACATGTGCCCGGGCGAGAAGCGACGCCTGACTATCCCCGCCTCTCATG
GCTACGGCGACCGAGGCGCGGGTGCCAAGATCCCGGGCGGTGCCACTCTG
GTCTTTGACGTGGAGCTGCTGGGTATCACTAGCCCGGATAGCGGCAAGGA
GTTCTAAAGTTCTTCGATACCGGAAAGGAAGAGCGAGACAGAGAGAATGG
AAAGGGGCCACAAAAGTTATTTTTGCGACGTACGTAAACAATGCGGAAAA
GGGTTTCTTGCTTACCTTGTTGGCTGGTACTAGAAAATAAAAACATTGGA
GGGAGGATCGGAAAGAGCCATAGATTCAGAGAGCGAGAGAGGCAGAGAGG
GAGGGAGAGAGGCGGGATGGAGGTCACATCAACTGTCCTCCACCCGGCTA
ACACCCCTCTGTAGAGACAATAGGAGGCAACGGTACTCTGGAGAAGAAAG
GGAAAAAGGAAAAGTATCGGAACAGCTGTGACTGAGTCCTCACCCACTGC
TTAAGTCATTGCTTTTCGTGCTCTCTTGTTATGTCTTCCCCCCCCCCGAT
GAGAGATATCGGGAATTGTAACAATTCCCCGGAGTCTCACGCCTCGCCTT
CAATCGTTACACATCACCGTTTCCCTTCAATAGAGGGTCAATCTACGCCG
TCCGTCCGCCCTTCCTTCCTTCACCAAAAGACAAGAAAGTAGATGCAGCT
TTTGGTATGGATTATTAGTGCTTTCCTTTATATAAGACTTGCTGCGTTAG
CCGCTGTGACACAATACACGCAATTACCCACATAAATCCACGAACGCCTG
TCCGTGTGCAGCCACACGTGTGTGGCAACTCAAGTACAGGCACTGTATGA
TGTTACCTTTCAATAGTACATATATTCCTGTCTGAATGGATCTACATTTC
GTTGCATTTTTTGTCGTACCTTCCTGTAATGTACCCACGCACTCGATTCC
TCATTCACCACCTTTCATGAGCCCCGTGTTTTCCTCCATTCTAATTCCTC
CATTCTAATTCTTCCCGAGAGACTTACACTCGTATAAGTGTCTTGTCATG
CTACATGCGCTCCTCCCTTCCCCATCCATTATTCCCAGACTCCCTCTATT
TTCCCTCCCTCCTCTTTATTGCAATTTTTCCTCCTCCTTCTTCGTCTCCA
CCGTCGCCACGTCCGCCCCTCCACGTGATCTCAAGAGCATCTCCGCCTGA
AATTTCGGCCCGCCCAGCTTCCAGCAGTTGGGCATCACCCCGGTAACCTC
GTAAACCCCCCTTTCCAAGACCCGGAAGAGCCCACTCTCATCCAAAAAGG
AATTACACGTCCCAGTCAAAATACAATAGTTGCTCTCGAACGGATTCGAA
TGATGCTGGCCATGCTCTTTCCTGCTTATTATCAAGCCCATGTCCTGCAA
CATCACGGCCCATGCAGGGGGCTTGGTCAAGTGCGAGATCTTATGAAATT
CCTGGCTAAGCACCTGCAGATTGAAAAACAAGATCGCAAAAAGGGTCAAG
AGGGGGTTGCTTGGATGCAGCAGGACCACAGCCATCATCGCCGGAATGGT
TATCTTAGTAATCTTGTGCACGTTGTTGCAAAATTCCCGGTATGTAATAG
TCCAAGGCGCATCGTGATGTCCCTGGAAAGCCTCTATCACGGCCCCCAGT
ACAGGTGTCTTACCCGAGCCGTAGTTGTCCACCGACCAGTGAAAAACTCC
GCTGAAGAAATCAGAAAAAACGAGTGAGAATGCCATTGTAGCCATCAACA
TCGCCAAGTCTGCCGGGGTAGCCCCGCCCTTGACCACATAGCTTGTAGCT
ACTTGCTGCAGAGCGACTAGGGTGACGATGTAGTGTGTTGCGACGTGCAT
GCGGTGCACCCATGTGCTTTCCAACACGTCGCCTGCTGCCACGACCACTG
GCGGGGGCGGCCCCTTGCGTTTAACGCGCGTTTCGATGGAGGCGGGGTCA
ATGGAGAAAGAGGCTGGCTCGAGGGTAAGGGGCAATAGATCGAGATCGGG
GCTGGTGCTTCTGCTACCTTCTTGCATTTCAGGGGCCTGGACCACCGATT
GTAGAACCTCGACGTCTTGAGTCAGACGTACCGAGGCCAGAGGCCTTCGC
AAATGGTGCTGAGATCTCGACATCGGTCTCGTGGGTAGCACAAAGCCTCG
CACGGCGGCTGCAGACAATGCCAGCGTGGCGGCGGCGGCAGCGGCATTAG
CTGTCTTCATCGCTGGGTAGCTTCTCTAAGAACTGT
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protein sequence of NO01G04340.1

>NO01G04340.1-protein ID=NO01G04340.1-protein|Name=NO01G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MEEEEEGEGGAERLAFSNNTATVRHTGQPKMAWLSSWAASLALKFFLLTS
IGPFLAPTHRRQHQSTMYRKVFFITIVALVALTASAKQGDGVDLDPEEKV
RIGVKFRPEKCDVKSKKGDKLSMHYTGTLYKDGSKFDSSLDRNQPFEFTL
GQGQVIKGWDNGLINMCPGEKRRLTIPASHGYGDRGAGAKIPGGATLVFD
VELLGITSPDSGKEF*
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mRNA from alignment at chr1:1159592..1162752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04340.1 ID=NO01G04340.1|Name=NO01G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3161bp|location=Sequence derived from alignment at chr1:1159592..1162752- (Nannochloropsis oceanica)
CCGTTTGAAATGGAAGAGGAAGAAGAGGGCGAAGGAGGGGCAGAACGTCT
TGCTTTCTCCAACAACACCGCCACGGTCCGTCATACAGGGCAACCCAAAA
TGGCATGGCTGTCATCTTGGGCCGCAAGCCTGGCCTTAAAATTCTTTCTT
CTCACCAGCATCGGCCCTTTCCTCGCCCCTACCCATCGCAGGCAGCACCA
AAGCACCATGTACCGCAAGGTCTTCTTCATAACCATCGTCGCCCTTGTGG
CCCTGACCGCGTCTGCCAAGCAAGGCGACGGCGTTGACCTGGACCCTGAG
GAGAAAGTGGTAAGTGTTGTGTGGTGGTGGTTTTGCTGAAGCCGGTATTA
AACAGGAGAAGTGCAGGGGTGTGAGCGTGCCTCACTCACAACTACTTATT
GCTGATAATACTCTCCTCAAACCCACCTATCCCACATCTACAAACAAACA
ACAAACAGCGCATAGGCGTCAAGTTTCGCCCTGAGAAGTGCGACGTTAAG
TCCAAGAAAGGCGACAAACTGTCAATGCACTATACGGGCACCCTTTACAA
GGATGGGAGCAAGTTCGACTCGAGCCTGGACCGCAACCAGCCCTTTGAAT
TCACCTTGGGCCAAGGCCAGGTATGTATCATTGACCGTCATTATTCCTTC
AAGCATTTCTGATGGCGCTAAATCATGCTTTCTTATCAATCCCGACAGGT
CATCAAGGGATGGGACAACGGCCTCATTAACATGTGCCCGGGCGAGAAGC
GACGCCTGACTATCCCCGCCTCTCATGGCTACGGCGACCGAGGCGCGGTA
CGGATAGAGAGCGAAAGATTTAGCTCCTCTCCCGGCTTTCTTGTCATGTC
TAGCTCCGTTTCTTTGAAATTTGCCCCCGCTCCTATCCCTTGATTTGCGC
CTGTCATGGCCTTTCTGCAAATCTTAATTTCTTTTACTCTCAGTCAAGCA
TGCCCACAATCATCTTCTTCATCATCGTTCCCCTCACGATAACAGGGTGC
CAAGATCCCGGGCGGTGCCACTCTGGTCTTTGACGTGGAGCTGCTGGGTA
TCACTAGCCCGGATAGCGGCAAGGAGTTCTAAAGTTCTTCGATACCGGAA
AGGAAGAGCGAGACAGAGAGAATGGAAAGGGGCCACAAAAGTTATTTTTG
CGACGTACGTAAACAATGCGGAAAAGGGTTTCTTGCTTACCTTGTTGGCT
GGTACTAGAAAATAAAAACATTGGAGGGAGGATCGGAAAGAGCCATAGAT
TCAGAGAGCGAGAGAGGCAGAGAGGGAGGGAGAGAGGCGGGATGGAGGTC
ACATCAACTGTCCTCCACCCGGCTAACACCCCTCTGTAGAGACAATAGGA
GGCAACGGTACTCTGGAGAAGAAAGGGAAAAAGGAAAAGTATCGGAACAG
CTGTGACTGAGTCCTCACCCACTGCTTAAGTCATTGCTTTTCGTGCTCTC
TTGTTATGTCTTCCCCCCCCCCGATGAGAGATATCGGGAATTGTAACAAT
TCCCCGGAGTCTCACGCCTCGCCTTCAATCGTTACACATCACCGTTTCCC
TTCAATAGAGGGTCAATCTACGCCGTCCGTCCGCCCTTCCTTCCTTCACC
AAAAGACAAGAAAGTAGATGCAGCTTTTGGTATGGATTATTAGTGCTTTC
CTTTATATAAGACTTGCTGCGTTAGCCGCTGTGACACAATACACGCAATT
ACCCACATAAATCCACGAACGCCTGTCCGTGTGCAGCCACACGTGTGTGG
CAACTCAAGTACAGGCACTGTATGATGTTACCTTTCAATAGTACATATAT
TCCTGTCTGAATGGATCTACATTTCGTTGCATTTTTTGTCGTACCTTCCT
GTAATGTACCCACGCACTCGATTCCTCATTCACCACCTTTCATGAGCCCC
GTGTTTTCCTCCATTCTAATTCCTCCATTCTAATTCTTCCCGAGAGACTT
ACACTCGTATAAGTGTCTTGTCATGCTACATGCGCTCCTCCCTTCCCCAT
CCATTATTCCCAGACTCCCTCTATTTTCCCTCCCTCCTCTTTATTGCAAT
TTTTCCTCCTCCTTCTTCGTCTCCACCGTCGCCACGTCCGCCCCTCCACG
TGATCTCAAGAGCATCTCCGCCTGAAATTTCGGCCCGCCCAGCTTCCAGC
AGTTGGGCATCACCCCGGTAACCTCGTAAACCCCCCTTTCCAAGACCCGG
AAGAGCCCACTCTCATCCAAAAAGGAATTACACGTCCCAGTCAAAATACA
ATAGTTGCTCTCGAACGGATTCGAATGATGCTGGCCATGCTCTTTCCTGC
TTATTATCAAGCCCATGTCCTGCAACATCACGGCCCATGCAGGGGGCTTG
GTCAAGTGCGAGATCTTATGAAATTCCTGGCTAAGCACCTGCAGATTGAA
AAACAAGATCGCAAAAAGGGTCAAGAGGGGGTTGCTTGGATGCAGCAGGA
CCACAGCCATCATCGCCGGAATGGTTATCTTAGTAATCTTGTGCACGTTG
TTGCAAAATTCCCGGTATGTAATAGTCCAAGGCGCATCGTGATGTCCCTG
GAAAGCCTCTATCACGGCCCCCAGTACAGGTGTCTTACCCGAGCCGTAGT
TGTCCACCGACCAGTGAAAAACTCCGCTGAAGAAATCAGAAAAAACGAGT
GAGAATGCCATTGTAGCCATCAACATCGCCAAGTCTGCCGGGGTAGCCCC
GCCCTTGACCACATAGCTTGTAGCTACTTGCTGCAGAGCGACTAGGGTGA
CGATGTAGTGTGTTGCGACGTGCATGCGGTGCACCCATGTGCTTTCCAAC
ACGTCGCCTGCTGCCACGACCACTGGCGGGGGCGGCCCCTTGCGTTTAAC
GCGCGTTTCGATGGAGGCGGGGTCAATGGAGAAAGAGGCTGGCTCGAGGG
TAAGGGGCAATAGATCGAGATCGGGGCTGGTGCTTCTGCTACCTTCTTGC
ATTTCAGGGGCCTGGACCACCGATTGTAGAACCTCGACGTCTTGAGTCAG
ACGTACCGAGGCCAGAGGCCTTCGCAAATGGTGCTGAGATCTCGACATCG
GTCTCGTGGGTAGCACAAAGCCTCGCACGGCGGCTGCAGACAATGCCAGC
GTGGCGGCGGCGGCAGCGGCATTAGCTGTCTTCATCGCTGGGTAGCTTCT
CTAAGAACTGT
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Coding sequence (CDS) from alignment at chr1:1159592..1162752-

>NO01G04340.1 ID=NO01G04340.1|Name=NO01G04340.1|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr1:1159592..1162752- (Nannochloropsis oceanica)
ATGGAAGAGGAAGAAGAGGGCGAAGGAGGGGCAGAACGTCTTGCTTTCTC
CAACAACACCGCCACGGTCCGTCATACAGGGCAACCCAAAATGGCATGGC
TGTCATCTTGGGCCGCAAGCCTGGCCTTAAAATTCTTTCTTCTCACCAGC
ATCGGCCCTTTCCTCGCCCCTACCCATCGCAGGCAGCACCAAAGCACCAT
GTACCGCAAGGTCTTCTTCATAACCATCGTCGCCCTTGTGGCCCTGACCG
CGTCTGCCAAGCAAGGCGACGGCGTTGACCTGGACCCTGAGGAGAAAGTG
CGCATAGGCGTCAAGTTTCGCCCTGAGAAGTGCGACGTTAAGTCCAAGAA
AGGCGACAAACTGTCAATGCACTATACGGGCACCCTTTACAAGGATGGGA
GCAAGTTCGACTCGAGCCTGGACCGCAACCAGCCCTTTGAATTCACCTTG
GGCCAAGGCCAGGTCATCAAGGGATGGGACAACGGCCTCATTAACATGTG
CCCGGGCGAGAAGCGACGCCTGACTATCCCCGCCTCTCATGGCTACGGCG
ACCGAGGCGCGGGTGCCAAGATCCCGGGCGGTGCCACTCTGGTCTTTGAC
GTGGAGCTGCTGGGTATCACTAGCCCGGATAGCGGCAAGGAGTTCTAA
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Synonyms
Publications