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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1155251..1156937 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04320.1 vs.
Match: XP_005854237.1 (hypothetical protein NGA_0194600 [Nannochloropsis gaditana CCMP526]; EKU22128.1 hypothetical protein NGA_0194600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 299.3 bits (765), Expect = 1.100e-77 Identity = 139/184 (75.54%), Postives = 158/184 (85.87%), Query Frame = 0
Query: 61 MRRSMQTAGHDAAVETALPLLFGRWTLDEKRLVRPLWGQKPVKHAGALGIADGDGSRFEVLLLPKGRVDQPLDSALRGLDWRLSFKDMYATGRLEFKIVHPPPDKKLIANDQIPHTHYYSGVFCDGLDRVEGWVERYADVEDDKLGPIRRKVRIGQFCLMKVKEREKSANTGGAMMAVAAGVVA 245
MR +MQT GHDAAVETALPLLFG WTL+EKR+++PLWG KPV+HAGALGI DG S FEVLL PKGR+DQP+DSA+RGLDW L+FKDMYATGRLEFKIVHPPPDKKLIANDQIPH HYYSG FCDGL+RVEG+VERYAD+ED+KLGPIR+KVRIG+FCL K KE + A VAA ++A
Sbjct: 1 MRHAMQTVGHDAAVETALPLLFGSWTLEEKRVIQPLWGMKPVRHAGALGIPDGSSSTFEVLLKPKGRLDQPVDSAVRGLDWTLNFKDMYATGRLEFKIVHPPPDKKLIANDQIPHIHYYSGTFCDGLNRVEGFVERYADIEDEKLGPIRKKVRIGKFCLEKKKEEKGEAKDS----MVAASLLA 180
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04320.1 ID=NO01G04320.1|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp CTTTTCAGAAAGTGACCGTGTAAACCTCCTCCCTCTTCCCCGACGTGTTT AAATCGAATGCAAGTCGTCTGGCGGGTAGTAACAAAATGCCTCTACATGT TCCCAGCAAGCGCCAGGCTCCAACTACTCAGGCGCCGTGTACCTTAGATT ATACTTTCTGTGCATGATTCTGCCTCAAGCGGCGCGCACAAGGTGACTTG CTTTAATGCTCTGACCTGGCCCTGAAATAGCGCGCGCTAAATTTTTTGCT TTCCTCGTCATCACCCCAACGACACGCACAGTCAGTCACTTACGCTCATC TCTCCCGACGGCCGCCTACCCACCACGACAGGCTTGGGCGCTTCGAGCTG CTGCTAATCACTGCTTGCCCGGTCCCGAGCTGGAGAAGTTAGCTCCATGA AGGCGACTCCGCCGCGAGGCTGTAGCTATACCACCCTCCTGCTGTGCGTG CTAAGACTGCTGGGGGTGCTTGTCCTCTTTCCAAACTCGATCCAAGCCTT TGCGCCGCCATACACGTCATCGTTGTCATTTTGCTCAACAAAAAGAAGAT TTCTCGGTGACGAGGCCATCGACCTCATGCGGCGTTCGATGCAGACGGCA GGACACGATGCCGCAGTCGAGACAGCCTTGCCTCTGCTCTTTGGCCGCTG GACGCTTGACGAAAAGCGGTTGGTGCGGCCGTTGTGGGGACAGAAACCCG TCAAGCATGCGGGGGCTCTGGGGATTGCCGATGGGGATGGCAGCCGGTTC GAGGTACTCCTGCTGCCGAAAGGCCGGGTAGACCAACCACTTGACAGCGC CTTGCGCGGTCTGGATTGGCGTCTGAGTTTTAAGGACATGTATGCGACGG GTCGCTTGGAGTTCAAGATTGTACACCCTCCCCCAGACAAAAAGCTCATC GCGAACGATCAGATCCCACACACGCATTACTACTCTGGAGTCTTTTGCGA CGGTCTCGATAGGGTCGAGGGATGGGTTGAGCGGTACGCCGACGTGGAAG ATGACAAGCTTGGCCCGATAAGGAGGAAGGTTCGGATCGGGCAGTTCTGT CTGATGAAAGTAAAGGAAAGGGAGAAAAGTGCGAATACAGGAGGGGCAAT GATGGCCGTGGCTGCTGGCGTTGTGGCTTAGGGTAGCGCATCCTTTTGCA GATAGGCTGATAGTTATAGTGTACATAATTTTTGTGTGGTTGGAGACCGG AATCAAGACATGAAGGGATAAGGGAGGATGATTGTGAGAGATTGACGTGC CTGCTCGTAGTCAAGGATTGTACGTTATTTTTGCTGTTCATTCATCGCGC TGTTCCAATATTTGTAGGTAAAGAGTAAAAGAAAGGTGCGAAATTGCGCA GTCGTGACGGCAACTTTCTTATTTGCAGAATGGCACATACTGCCCATAGA AATGAGAGTGTGGAAGGGATGATGCCATGGGTCTATGTGTGTACAGGAGA AGACAAGACGCGCGCGATTTCCGTTGTTCGAAATAGGTCCGGTGTATATG TAATAGGGATGTGTCTAATTTTCCATAATAATAATTATAATAACAACAAT AATTGTTTTAATCACGATAAGAATAACAACAAGACGAAGGAAACGAATCA GAAGAGGGACTAAACCTCATGCCGCTTGGTGGCGAGTAGGCCAGAAACAC AAGAAGAAGAAAAAAATCTTTTTCGGAAGCAACCGGG back to topprotein sequence of NO01G04320.1 >NO01G04320.1-protein ID=NO01G04320.1-protein|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp MKATPPRGCSYTTLLLCVLRLLGVLVLFPNSIQAFAPPYTSSLSFCSTKR RFLGDEAIDLMRRSMQTAGHDAAVETALPLLFGRWTLDEKRLVRPLWGQK PVKHAGALGIADGDGSRFEVLLLPKGRVDQPLDSALRGLDWRLSFKDMYA TGRLEFKIVHPPPDKKLIANDQIPHTHYYSGVFCDGLDRVEGWVERYADV EDDKLGPIRRKVRIGQFCLMKVKEREKSANTGGAMMAVAAGVVA* back to topmRNA from alignment at chr1:1155251..1156937+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04320.1 ID=NO01G04320.1|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp|location=Sequence derived from alignment at chr1:1155251..1156937+ (Nannochloropsis oceanica) CTTTTCAGAAAGTGACCGTGTAAACCTCCTCCCTCTTCCCCGACGTGTTT
AAATCGAATGCAAGTCGTCTGGCGGGTAGTAACAAAATGCCTCTACATGT
TCCCAGCAAGCGCCAGGCTCCAACTACTCAGGCGCCGTGTACCTTAGATT
ATACTTTCTGTGCATGATTCTGCCTCAAGCGGCGCGCACAAGGTGACTTG
CTTTAATGCTCTGACCTGGCCCTGAAATAGCGCGCGCTAAATTTTTTGCT
TTCCTCGTCATCACCCCAACGACACGCACAGTCAGTCACTTACGCTCATC
TCTCCCGACGGCCGCCTACCCACCACGACAGGCTTGGGCGCTTCGAGCTG
CTGCTAATCACTGCTTGCCCGGTCCCGAGCTGGAGAAGTTAGCTCCATGA
AGGCGACTCCGCCGCGAGGCTGTAGCTATACCACCCTCCTGCTGTGCGTG
CTAAGACTGCTGGGGGTGCTTGTCCTCTTTCCAAACTCGATCCAAGCCTT
TGCGCCGCCATACACGTCATCGTTGTCATTTTGCTCAACAAAAAGAAGAT
TTCTCGGTGACGAGGCCATCGACCTCATGCGGCGTTCGATGCAGACGGCA
GGACACGATGCCGCAGTCGAGACAGCCTTGCCTCTGCTCTTTGGCCGCTG
GACGCTTGACGAAAAGCGGTTGGTGCGGCCGTTGTGGGGACAGAAACCCG
TCAAGCATGCGGGGGCTCTGGGGATTGCCGATGGGGATGGCAGCCGGTTC
GAGGTACTCCTGCTGCCGAAAGGCCGGGTAGACCAACCACTTGACAGCGC
CTTGCGCGGTCTGGATTGGCGTCTGAGTTTTAAGGACATGTATGCGACGG
GTCGCTTGGAGTTCAAGATTGTACACCCTCCCCCAGACAAAAAGCTCATC
GCGAACGATCAGATCCCACACACGCATTACTACTCTGGAGTCTTTTGCGA
CGGTCTCGATAGGGTCGAGGGATGGGTTGAGCGGTACGCCGACGTGGAAG
ATGACAAGCTTGGCCCGATAAGGAGGAAGGTTCGGATCGGGCAGTTCTGT
CTGATGAAAGTAAAGGAAAGGGAGAAAAGTGCGAATACAGGAGGGGCAAT
GATGGCCGTGGCTGCTGGCGTTGTGGCTTAGGGTAGCGCATCCTTTTGCA
GATAGGCTGATAGTTATAGTGTACATAATTTTTGTGTGGTTGGAGACCGG
AATCAAGACATGAAGGGATAAGGGAGGATGATTGTGAGAGATTGACGTGC
CTGCTCGTAGTCAAGGATTGTACGTTATTTTTGCTGTTCATTCATCGCGC
TGTTCCAATATTTGTAGGTAAAGAGTAAAAGAAAGGTGCGAAATTGCGCA
GTCGTGACGGCAACTTTCTTATTTGCAGAATGGCACATACTGCCCATAGA
AATGAGAGTGTGGAAGGGATGATGCCATGGGTCTATGTGTGTACAGGAGA
AGACAAGACGCGCGCGATTTCCGTTGTTCGAAATAGGTCCGGTGTATATG
TAATAGGGATGTGTCTAATTTTCCATAATAATAATTATAATAACAACAAT
AATTGTTTTAATCACGATAAGAATAACAACAAGACGAAGGAAACGAATCA
GAAGAGGGACTAAACCTCATGCCGCTTGGTGGCGAGTAGGCCAGAAACAC
AAGAAGAAGAAAAAAATCTTTTTCGGAAGCAACCGGG back to topCoding sequence (CDS) from alignment at chr1:1155251..1156937+ >NO01G04320.1 ID=NO01G04320.1|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr1:1155251..1156937+ (Nannochloropsis oceanica) ATGAAGGCGACTCCGCCGCGAGGCTGTAGCTATACCACCCTCCTGCTGTG CGTGCTAAGACTGCTGGGGGTGCTTGTCCTCTTTCCAAACTCGATCCAAG CCTTTGCGCCGCCATACACGTCATCGTTGTCATTTTGCTCAACAAAAAGA AGATTTCTCGGTGACGAGGCCATCGACCTCATGCGGCGTTCGATGCAGAC GGCAGGACACGATGCCGCAGTCGAGACAGCCTTGCCTCTGCTCTTTGGCC GCTGGACGCTTGACGAAAAGCGGTTGGTGCGGCCGTTGTGGGGACAGAAA CCCGTCAAGCATGCGGGGGCTCTGGGGATTGCCGATGGGGATGGCAGCCG GTTCGAGGTACTCCTGCTGCCGAAAGGCCGGGTAGACCAACCACTTGACA GCGCCTTGCGCGGTCTGGATTGGCGTCTGAGTTTTAAGGACATGTATGCG ACGGGTCGCTTGGAGTTCAAGATTGTACACCCTCCCCCAGACAAAAAGCT CATCGCGAACGATCAGATCCCACACACGCATTACTACTCTGGAGTCTTTT GCGACGGTCTCGATAGGGTCGAGGGATGGGTTGAGCGGTACGCCGACGTG GAAGATGACAAGCTTGGCCCGATAAGGAGGAAGGTTCGGATCGGGCAGTT CTGTCTGATGAAAGTAAAGGAAAGGGAGAAAAGTGCGAATACAGGAGGGG CAATGATGGCCGTGGCTGCTGGCGTTGTGGCTTAG back to top
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