NO01G04320.1, NO01G04320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04320.1
Unique NameNO01G04320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1687
Alignment locationchr1:1155251..1156937 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1155251..1156937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04320.1 vs.
Match: XP_005854237.1 (hypothetical protein NGA_0194600 [Nannochloropsis gaditana CCMP526]; EKU22128.1 hypothetical protein NGA_0194600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 299.3 bits (765), Expect = 1.100e-77
Identity = 139/184 (75.54%), Postives = 158/184 (85.87%), Query Frame = 0
Query:   61 MRRSMQTAGHDAAVETALPLLFGRWTLDEKRLVRPLWGQKPVKHAGALGIADGDGSRFEVLLLPKGRVDQPLDSALRGLDWRLSFKDMYATGRLEFKIVHPPPDKKLIANDQIPHTHYYSGVFCDGLDRVEGWVERYADVEDDKLGPIRRKVRIGQFCLMKVKEREKSANTGGAMMAVAAGVVA 245
            MR +MQT GHDAAVETALPLLFG WTL+EKR+++PLWG KPV+HAGALGI DG  S FEVLL PKGR+DQP+DSA+RGLDW L+FKDMYATGRLEFKIVHPPPDKKLIANDQIPH HYYSG FCDGL+RVEG+VERYAD+ED+KLGPIR+KVRIG+FCL K KE +  A        VAA ++A
Sbjct:    1 MRHAMQTVGHDAAVETALPLLFGSWTLEEKRVIQPLWGMKPVRHAGALGIPDGSSSTFEVLLKPKGRLDQPVDSAVRGLDWTLNFKDMYATGRLEFKIVHPPPDKKLIANDQIPHIHYYSGTFCDGLNRVEGFVERYADIEDEKLGPIRKKVRIGKFCLEKKKEEKGEAKDS----MVAASLLA 180          
The following BLAST results are available for this feature:
BLAST of NO01G04320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854237.11.100e-7775.54hypothetical protein NGA_0194600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04320NO01G04320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04320.1NO01G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04320.1.cds1NO01G04320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04320.1 ID=NO01G04320.1|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp
CTTTTCAGAAAGTGACCGTGTAAACCTCCTCCCTCTTCCCCGACGTGTTT
AAATCGAATGCAAGTCGTCTGGCGGGTAGTAACAAAATGCCTCTACATGT
TCCCAGCAAGCGCCAGGCTCCAACTACTCAGGCGCCGTGTACCTTAGATT
ATACTTTCTGTGCATGATTCTGCCTCAAGCGGCGCGCACAAGGTGACTTG
CTTTAATGCTCTGACCTGGCCCTGAAATAGCGCGCGCTAAATTTTTTGCT
TTCCTCGTCATCACCCCAACGACACGCACAGTCAGTCACTTACGCTCATC
TCTCCCGACGGCCGCCTACCCACCACGACAGGCTTGGGCGCTTCGAGCTG
CTGCTAATCACTGCTTGCCCGGTCCCGAGCTGGAGAAGTTAGCTCCATGA
AGGCGACTCCGCCGCGAGGCTGTAGCTATACCACCCTCCTGCTGTGCGTG
CTAAGACTGCTGGGGGTGCTTGTCCTCTTTCCAAACTCGATCCAAGCCTT
TGCGCCGCCATACACGTCATCGTTGTCATTTTGCTCAACAAAAAGAAGAT
TTCTCGGTGACGAGGCCATCGACCTCATGCGGCGTTCGATGCAGACGGCA
GGACACGATGCCGCAGTCGAGACAGCCTTGCCTCTGCTCTTTGGCCGCTG
GACGCTTGACGAAAAGCGGTTGGTGCGGCCGTTGTGGGGACAGAAACCCG
TCAAGCATGCGGGGGCTCTGGGGATTGCCGATGGGGATGGCAGCCGGTTC
GAGGTACTCCTGCTGCCGAAAGGCCGGGTAGACCAACCACTTGACAGCGC
CTTGCGCGGTCTGGATTGGCGTCTGAGTTTTAAGGACATGTATGCGACGG
GTCGCTTGGAGTTCAAGATTGTACACCCTCCCCCAGACAAAAAGCTCATC
GCGAACGATCAGATCCCACACACGCATTACTACTCTGGAGTCTTTTGCGA
CGGTCTCGATAGGGTCGAGGGATGGGTTGAGCGGTACGCCGACGTGGAAG
ATGACAAGCTTGGCCCGATAAGGAGGAAGGTTCGGATCGGGCAGTTCTGT
CTGATGAAAGTAAAGGAAAGGGAGAAAAGTGCGAATACAGGAGGGGCAAT
GATGGCCGTGGCTGCTGGCGTTGTGGCTTAGGGTAGCGCATCCTTTTGCA
GATAGGCTGATAGTTATAGTGTACATAATTTTTGTGTGGTTGGAGACCGG
AATCAAGACATGAAGGGATAAGGGAGGATGATTGTGAGAGATTGACGTGC
CTGCTCGTAGTCAAGGATTGTACGTTATTTTTGCTGTTCATTCATCGCGC
TGTTCCAATATTTGTAGGTAAAGAGTAAAAGAAAGGTGCGAAATTGCGCA
GTCGTGACGGCAACTTTCTTATTTGCAGAATGGCACATACTGCCCATAGA
AATGAGAGTGTGGAAGGGATGATGCCATGGGTCTATGTGTGTACAGGAGA
AGACAAGACGCGCGCGATTTCCGTTGTTCGAAATAGGTCCGGTGTATATG
TAATAGGGATGTGTCTAATTTTCCATAATAATAATTATAATAACAACAAT
AATTGTTTTAATCACGATAAGAATAACAACAAGACGAAGGAAACGAATCA
GAAGAGGGACTAAACCTCATGCCGCTTGGTGGCGAGTAGGCCAGAAACAC
AAGAAGAAGAAAAAAATCTTTTTCGGAAGCAACCGGG
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protein sequence of NO01G04320.1

>NO01G04320.1-protein ID=NO01G04320.1-protein|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MKATPPRGCSYTTLLLCVLRLLGVLVLFPNSIQAFAPPYTSSLSFCSTKR
RFLGDEAIDLMRRSMQTAGHDAAVETALPLLFGRWTLDEKRLVRPLWGQK
PVKHAGALGIADGDGSRFEVLLLPKGRVDQPLDSALRGLDWRLSFKDMYA
TGRLEFKIVHPPPDKKLIANDQIPHTHYYSGVFCDGLDRVEGWVERYADV
EDDKLGPIRRKVRIGQFCLMKVKEREKSANTGGAMMAVAAGVVA*
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mRNA from alignment at chr1:1155251..1156937+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04320.1 ID=NO01G04320.1|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp|location=Sequence derived from alignment at chr1:1155251..1156937+ (Nannochloropsis oceanica)
CTTTTCAGAAAGTGACCGTGTAAACCTCCTCCCTCTTCCCCGACGTGTTT AAATCGAATGCAAGTCGTCTGGCGGGTAGTAACAAAATGCCTCTACATGT TCCCAGCAAGCGCCAGGCTCCAACTACTCAGGCGCCGTGTACCTTAGATT ATACTTTCTGTGCATGATTCTGCCTCAAGCGGCGCGCACAAGGTGACTTG CTTTAATGCTCTGACCTGGCCCTGAAATAGCGCGCGCTAAATTTTTTGCT TTCCTCGTCATCACCCCAACGACACGCACAGTCAGTCACTTACGCTCATC TCTCCCGACGGCCGCCTACCCACCACGACAGGCTTGGGCGCTTCGAGCTG CTGCTAATCACTGCTTGCCCGGTCCCGAGCTGGAGAAGTTAGCTCCATGA AGGCGACTCCGCCGCGAGGCTGTAGCTATACCACCCTCCTGCTGTGCGTG CTAAGACTGCTGGGGGTGCTTGTCCTCTTTCCAAACTCGATCCAAGCCTT TGCGCCGCCATACACGTCATCGTTGTCATTTTGCTCAACAAAAAGAAGAT TTCTCGGTGACGAGGCCATCGACCTCATGCGGCGTTCGATGCAGACGGCA GGACACGATGCCGCAGTCGAGACAGCCTTGCCTCTGCTCTTTGGCCGCTG GACGCTTGACGAAAAGCGGTTGGTGCGGCCGTTGTGGGGACAGAAACCCG TCAAGCATGCGGGGGCTCTGGGGATTGCCGATGGGGATGGCAGCCGGTTC GAGGTACTCCTGCTGCCGAAAGGCCGGGTAGACCAACCACTTGACAGCGC CTTGCGCGGTCTGGATTGGCGTCTGAGTTTTAAGGACATGTATGCGACGG GTCGCTTGGAGTTCAAGATTGTACACCCTCCCCCAGACAAAAAGCTCATC GCGAACGATCAGATCCCACACACGCATTACTACTCTGGAGTCTTTTGCGA CGGTCTCGATAGGGTCGAGGGATGGGTTGAGCGGTACGCCGACGTGGAAG ATGACAAGCTTGGCCCGATAAGGAGGAAGGTTCGGATCGGGCAGTTCTGT CTGATGAAAGTAAAGGAAAGGGAGAAAAGTGCGAATACAGGAGGGGCAAT GATGGCCGTGGCTGCTGGCGTTGTGGCTTAGGGTAGCGCATCCTTTTGCA GATAGGCTGATAGTTATAGTGTACATAATTTTTGTGTGGTTGGAGACCGG AATCAAGACATGAAGGGATAAGGGAGGATGATTGTGAGAGATTGACGTGC CTGCTCGTAGTCAAGGATTGTACGTTATTTTTGCTGTTCATTCATCGCGC TGTTCCAATATTTGTAGGTAAAGAGTAAAAGAAAGGTGCGAAATTGCGCA GTCGTGACGGCAACTTTCTTATTTGCAGAATGGCACATACTGCCCATAGA AATGAGAGTGTGGAAGGGATGATGCCATGGGTCTATGTGTGTACAGGAGA AGACAAGACGCGCGCGATTTCCGTTGTTCGAAATAGGTCCGGTGTATATG TAATAGGGATGTGTCTAATTTTCCATAATAATAATTATAATAACAACAAT AATTGTTTTAATCACGATAAGAATAACAACAAGACGAAGGAAACGAATCA GAAGAGGGACTAAACCTCATGCCGCTTGGTGGCGAGTAGGCCAGAAACAC AAGAAGAAGAAAAAAATCTTTTTCGGAAGCAACCGGG
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Coding sequence (CDS) from alignment at chr1:1155251..1156937+

>NO01G04320.1 ID=NO01G04320.1|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr1:1155251..1156937+ (Nannochloropsis oceanica)
ATGAAGGCGACTCCGCCGCGAGGCTGTAGCTATACCACCCTCCTGCTGTG
CGTGCTAAGACTGCTGGGGGTGCTTGTCCTCTTTCCAAACTCGATCCAAG
CCTTTGCGCCGCCATACACGTCATCGTTGTCATTTTGCTCAACAAAAAGA
AGATTTCTCGGTGACGAGGCCATCGACCTCATGCGGCGTTCGATGCAGAC
GGCAGGACACGATGCCGCAGTCGAGACAGCCTTGCCTCTGCTCTTTGGCC
GCTGGACGCTTGACGAAAAGCGGTTGGTGCGGCCGTTGTGGGGACAGAAA
CCCGTCAAGCATGCGGGGGCTCTGGGGATTGCCGATGGGGATGGCAGCCG
GTTCGAGGTACTCCTGCTGCCGAAAGGCCGGGTAGACCAACCACTTGACA
GCGCCTTGCGCGGTCTGGATTGGCGTCTGAGTTTTAAGGACATGTATGCG
ACGGGTCGCTTGGAGTTCAAGATTGTACACCCTCCCCCAGACAAAAAGCT
CATCGCGAACGATCAGATCCCACACACGCATTACTACTCTGGAGTCTTTT
GCGACGGTCTCGATAGGGTCGAGGGATGGGTTGAGCGGTACGCCGACGTG
GAAGATGACAAGCTTGGCCCGATAAGGAGGAAGGTTCGGATCGGGCAGTT
CTGTCTGATGAAAGTAAAGGAAAGGGAGAAAAGTGCGAATACAGGAGGGG
CAATGATGGCCGTGGCTGCTGGCGTTGTGGCTTAG
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Synonyms
Publications