NO01G04270.1, NO01G04270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04270.1
Unique NameNO01G04270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2190
Alignment locationchr1:1141884..1144073 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1141884..1144073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04270.1 vs.
Match: EWM29359.1 (hypothetical protein Naga_100028g36 [Nannochloropsis gaditana])

HSP 1 Score: 753.1 bits (1943), Expect = 8.300e-214
Identity = 487/767 (63.49%), Postives = 546/767 (71.19%), Query Frame = 0 
Query:    1 MTLWTSPVPMHMTGKEVTAPRMDTLNQQERNVSTPVSAPLAAQGASAGAG----------------RSSSSSSNNAPSQRRQTLGTVPSAAEIHQSQEKWLEFAPTSPQRRASFVSEPGAIDGNPFEIFKEPARIDSLGTQKQSFYEAGTSYSVKQHAPPLSSASSPPPSIPPPPTTTQCNTTFASSSSSLG---LNSS-RPASRSSNPFYEAPLSPIRYNKPVAKVELSPQSSALSTAAFMELNPLRRTESPTASIPLDQLKLVTYNKEQAAIAAAVAAQQQEQMQQERLQQQQQQQQQQQQQQQQQQQWGAWPQQQRQ----QQQQWGAWPQQQ------QQHQP--PTEWGAFGSAQPKQQSQQQQQQQQQQQQQEGFGDSFCWPPAAGPRERAASVGTVAKAPNSDELNLFLSG--VGGGKEG-----GGGAIFDPVRQKSLAESSFDLSVGAFFPEE---AVAKEGGRARRSSSRMGYGEEEEEDEEEEPVDHHDEEDDGSTGGDGIGGLEMQDDHFRHEGEGGREGRGVNEGASGMYYEVTFTAPTTFGMLLERKDEWTRGAVARRERTVVTLVVEGGEAEGKGVGLGSMLASINGEDVTGLTYKETLERIKSQARPMTVVFERESLKEEVLQGYFFVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNVFQIYDSKRAYHNTVVALFQRKRPAHRVKTYALTYAFKLSPLQERKMEGHTAPLKFFAFMTPAARFKSIRIASETRKNVAALHERFGRFAGKS 726
            MTLWTSPVPMHM GK+VTAPRM+T   Q+   S  VS  LA+ GA  GAG                 +S S+++ AP QRRQTL  VPSAAE+H  QEKWLEFAPTSPQRRASFV EPG +DGNPFEIFKEPAR D  G+  QSFYEAG SYS KQHAPP S+ASS    +  P + T+      +SS  LG   L+SS RP+S + NPF EAPLSPIRYNKP+AKVELSPQS+ALS  AF  L+PL+RTESPTAS+PLDQLK+  YN+EQ  +AAA AA++Q +  QE    ++Q Q QQ Q     QQ    PQ Q +    QQ  W AWP QQ       Q QP   TEW AFG++            Q+    Q  F ++F W    G              PNSD+  + L G   GGG++G     GGGAIFDPVRQKSLA++SFDLSVG FFPEE   A    G  +RRSS   G G  EEE+EE    DH +EEDD S GGDG G LEMQ++HF   GEGG    G    ASGMYYEV FTAPTTFGMLLERKDEW RG+VARRERTVVTLVVEGGEAE KGV +GSM+ SINGE+VTGLTYKETLERIK QARPM VVFERESL E+VLQGYFFVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNV QIYDSKRAYHNTVVALFQRKRP+HRVKTYALTYAFKLS LQER+M+GHTAPLKFFAFMTPAARFKS+RIASETRK+V  L ERF RFAGKS
Sbjct:    1 MTLWTSPVPMHMAGKQVTAPRMETA-VQDGEPSNTVSVVLAS-GAGDGAGSNLGSGASNNFTHSNSSASGSTTSTAPHQRRQTLANVPSAAEVHGRQEKWLEFAPTSPQRRASFVDEPGVVDGNPFEIFKEPARADHFGS--QSFYEAGASYSAKQHAPPPSAASS---VVSRPASATR----LTASSIPLGPERLDSSYRPSSSTGNPFCEAPLSPIRYNKPIAKVELSPQSTALSAVAFSALDPLKRTESPTASVPLDQLKISAYNREQEVLAAAKAAEEQGKQFQESEHYRRQLQLQQPQPTAHFQQNLPQPQGQAEQPHPQQGDWSAWPMQQGVLQAASQAQPASSTEWDAFGAS-------PTVFPQKAPPSQPTFDNNFGWQSIPG--------AFTTTTPNSDDFRV-LGGHAAGGGEDGGEGKRGGGAIFDPVRQKSLADASFDLSVGGFFPEEPTGAHTNAGTGSRRSS---GAGHAEEEEEEGGLEDHAEEEDDDSMGGDGTGELEMQEEHF---GEGGSGLEGRQRSASGMYYEVAFTAPTTFGMLLERKDEWVRGSVARRERTVVTLVVEGGEAEAKGVAVGSMIVSINGEEVTGLTYKETLERIKGQARPMQVVFERESLNEDVLQGYFFVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNVLQIYDSKRAYHNTVVALFQRKRPSHRVKTYALTYAFKLSQLQERRMDGHTAPLKFFAFMTPAARFKSVRIASETRKSVQGLQERFSRFAGKS 734
The following BLAST results are available for this feature:
BLAST of NO01G04270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29359.18.300e-21463.49hypothetical protein Naga_100028g36 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04270NO01G04270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04270.1NO01G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04270.1.cds1NO01G04270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04270.1 ID=NO01G04270.1|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp
ATGACGCTGTGGACCAGCCCCGTACCGATGCATATGACGGGCAAGGAGGT
CACGGCACCACGGATGGACACCCTTAACCAACAAGAAAGAAACGTCTCCA
CCCCCGTCTCGGCCCCCCTCGCCGCCCAGGGCGCTAGCGCCGGCGCTGGA
CGTAGCAGCAGTAGCTCGAGCAACAATGCACCATCGCAACGTCGCCAAAC
TCTGGGGACGGTTCCGTCGGCGGCAGAAATACACCAAAGCCAAGAGAAAT
GGCTTGAATTCGCCCCCACTTCTCCCCAACGACGTGCCTCCTTTGTCAGC
GAGCCTGGCGCAATTGATGGGAACCCCTTCGAGATCTTCAAGGAGCCCGC
ACGCATTGATAGCCTTGGCACACAAAAGCAAAGTTTCTATGAGGCAGGGA
CATCCTACTCCGTCAAACAACATGCCCCCCCCCTTTCCTCAGCCTCTTCC
CCTCCCCCCTCTATTCCGCCTCCCCCAACTACCACCCAATGCAACACCAC
TTTCGCCTCCTCCTCCTCGTCCCTTGGTCTGAACTCTTCCCGCCCAGCTT
CTCGAAGTTCCAACCCGTTCTACGAAGCTCCCCTGAGCCCGATTCGTTAC
AACAAGCCCGTGGCGAAAGTTGAACTTTCTCCTCAAAGCTCGGCTTTGTC
CACTGCAGCGTTTATGGAACTGAACCCTCTCAGGCGAACGGAGTCCCCCA
CCGCATCTATCCCCTTGGATCAATTGAAGTTAGTAACATACAATAAAGAG
CAGGCGGCGATTGCGGCGGCAGTGGCGGCACAGCAGCAGGAGCAGATGCA
GCAGGAGAGATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGTGGGGGGCATGGCCTCAGCAACAGCGACAG
CAGCAGCAGCAGTGGGGGGCATGGCCACAGCAACAACAGCAGCACCAGCC
GCCGACGGAATGGGGTGCATTTGGGTCCGCTCAACCCAAACAGCAATCGC
AGCAGCAACAACAACAACAACAACAACAGCAACAGCAGGAGGGGTTTGGA
GACTCTTTTTGTTGGCCTCCGGCTGCAGGCCCCAGGGAAAGAGCAGCATC
AGTAGGGACTGTAGCCAAGGCGCCCAACTCGGACGAATTAAACCTTTTCC
TGAGTGGTGTTGGAGGAGGGAAAGAGGGGGGAGGAGGGGCGATTTTTGAC
CCTGTCCGACAGAAATCTCTGGCGGAAAGTTCGTTTGATTTAAGCGTGGG
AGCCTTCTTTCCTGAAGAGGCTGTGGCGAAGGAGGGAGGAAGAGCGAGGA
GGAGCAGCAGCAGGATGGGGTATGGAGAGGAAGAGGAGGAAGATGAGGAG
GAGGAGCCGGTGGACCACCATGATGAGGAGGACGACGGGTCAACCGGGGG
GGATGGGATAGGGGGATTGGAGATGCAGGATGACCATTTTCGCCATGAGG
GGGAAGGGGGGAGGGAAGGGAGGGGGGTAAACGAAGGGGCATCGGGCATG
TATTATGAGGTGACGTTCACAGCGCCGACTACGTTTGGGATGTTGTTGGA
GAGGAAGGATGAGTGGACCCGAGGGGCGGTTGCGAGAAGGGAGAGGACGG
TGGTCACACTCGTGGTGGAGGGGGGGGAGGCAGAGGGTAAGGGGGTGGGG
CTTGGGAGCATGCTTGCTTCGATAAATGGAGAAGATGTCACGGGGTTGAC
TTACAAAGAGACGTTGGAGAGGATTAAGAGCCAGGCGAGGCCAATGACGG
TTGTGTTTGAGCGGGAAAGCTTGAAAGAGGAGGTGTTGCAGGGATATTTT
TTCGTGAGCAAGGGACCGTTTTTCTCAAACCCGACCACGATGGACAAGTG
GAAGAGGAAGTACATTGTCCTCGGGGGACCGATTGCCAAAAAGAACGTCT
TTCAGATTTATGATTCGAAACGGGCGTACCATAACACTGTCGTGGCCTTG
TTCCAGCGCAAGCGGCCCGCGCATCGCGTGAAGACGTATGCGTTGACGTA
TGCCTTCAAGCTCTCTCCATTGCAGGAACGGAAGATGGAGGGACATACCG
CCCCTTTGAAATTTTTCGCATTTATGACTCCAGCGGCGAGGTTCAAGAGT
ATTCGAATAGCGAGTGAGACGAGGAAGAACGTGGCGGCATTGCATGAGAG
ATTCGGGCGGTTTGCAGGCAAAAGCCAGGGAGCAAGATAG
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protein sequence of NO01G04270.1

>NO01G04270.1-protein ID=NO01G04270.1-protein|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=730bp
MTLWTSPVPMHMTGKEVTAPRMDTLNQQERNVSTPVSAPLAAQGASAGAG
RSSSSSSNNAPSQRRQTLGTVPSAAEIHQSQEKWLEFAPTSPQRRASFVS
EPGAIDGNPFEIFKEPARIDSLGTQKQSFYEAGTSYSVKQHAPPLSSASS
PPPSIPPPPTTTQCNTTFASSSSSLGLNSSRPASRSSNPFYEAPLSPIRY
NKPVAKVELSPQSSALSTAAFMELNPLRRTESPTASIPLDQLKLVTYNKE
QAAIAAAVAAQQQEQMQQERLQQQQQQQQQQQQQQQQQQQWGAWPQQQRQ
QQQQWGAWPQQQQQHQPPTEWGAFGSAQPKQQSQQQQQQQQQQQQQEGFG
DSFCWPPAAGPRERAASVGTVAKAPNSDELNLFLSGVGGGKEGGGGAIFD
PVRQKSLAESSFDLSVGAFFPEEAVAKEGGRARRSSSRMGYGEEEEEDEE
EEPVDHHDEEDDGSTGGDGIGGLEMQDDHFRHEGEGGREGRGVNEGASGM
YYEVTFTAPTTFGMLLERKDEWTRGAVARRERTVVTLVVEGGEAEGKGVG
LGSMLASINGEDVTGLTYKETLERIKSQARPMTVVFERESLKEEVLQGYF
FVSKGPFFSNPTTMDKWKRKYIVLGGPIAKKNVFQIYDSKRAYHNTVVAL
FQRKRPAHRVKTYALTYAFKLSPLQERKMEGHTAPLKFFAFMTPAARFKS
IRIASETRKNVAALHERFGRFAGKSQGAR*
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mRNA from alignment at chr1:1141884..1144073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04270.1 ID=NO01G04270.1|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr1:1141884..1144073+ (Nannochloropsis oceanica)
ATGACGCTGTGGACCAGCCCCGTACCGATGCATATGACGGGCAAGGAGGT
CACGGCACCACGGATGGACACCCTTAACCAACAAGAAAGAAACGTCTCCA
CCCCCGTCTCGGCCCCCCTCGCCGCCCAGGGCGCTAGCGCCGGCGCTGGA
CGTAGCAGCAGTAGCTCGAGCAACAATGCACCATCGCAACGTCGCCAAAC
TCTGGGGACGGTTCCGTCGGCGGCAGAAATACACCAAAGCCAAGAGAAAT
GGCTTGAATTCGCCCCCACTTCTCCCCAACGACGTGCCTCCTTTGTCAGC
GAGCCTGGCGCAATTGATGGGAACCCCTTCGAGATCTTCAAGGAGCCCGC
ACGCATTGATAGCCTTGGCACACAAAAGCAAAGTTTCTATGAGGCAGGGA
CATCCTACTCCGTCAAACAACATGCCCCCCCCCTTTCCTCAGCCTCTTCC
CCTCCCCCCTCTATTCCGCCTCCCCCAACTACCACCCAATGCAACACCAC
TTTCGCCTCCTCCTCCTCGTCCCTTGGTCTGAACTCTTCCCGCCCAGCTT
CTCGAAGTTCCAACCCGTTCTACGAAGCTCCCCTGAGCCCGATTCGTTAC
AACAAGCCCGTGGCGAAAGTTGAACTTTCTCCTCAAAGCTCGGCTTTGTC
CACTGCAGCGTTTATGGAACTGAACCCTCTCAGGCGAACGGAGTCCCCCA
CCGCATCTATCCCCTTGGATCAATTGAAGTTAGTAACATACAATAAAGAG
CAGGCGGCGATTGCGGCGGCAGTGGCGGCACAGCAGCAGGAGCAGATGCA
GCAGGAGAGATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGTGGGGGGCATGGCCTCAGCAACAGCGACAG
CAGCAGCAGCAGTGGGGGGCATGGCCACAGCAACAACAGCAGCACCAGCC
GCCGACGGAATGGGGTGCATTTGGGTCCGCTCAACCCAAACAGCAATCGC
AGCAGCAACAACAACAACAACAACAACAGCAACAGCAGGAGGGGTTTGGA
GACTCTTTTTGTTGGCCTCCGGCTGCAGGCCCCAGGGAAAGAGCAGCATC
AGTAGGGACTGTAGCCAAGGCGCCCAACTCGGACGAATTAAACCTTTTCC
TGAGTGGTGTTGGAGGAGGGAAAGAGGGGGGAGGAGGGGCGATTTTTGAC
CCTGTCCGACAGAAATCTCTGGCGGAAAGTTCGTTTGATTTAAGCGTGGG
AGCCTTCTTTCCTGAAGAGGCTGTGGCGAAGGAGGGAGGAAGAGCGAGGA
GGAGCAGCAGCAGGATGGGGTATGGAGAGGAAGAGGAGGAAGATGAGGAG
GAGGAGCCGGTGGACCACCATGATGAGGAGGACGACGGGTCAACCGGGGG
GGATGGGATAGGGGGATTGGAGATGCAGGATGACCATTTTCGCCATGAGG
GGGAAGGGGGGAGGGAAGGGAGGGGGGTAAACGAAGGGGCATCGGGCATG
TATTATGAGGTGACGTTCACAGCGCCGACTACGTTTGGGATGTTGTTGGA
GAGGAAGGATGAGTGGACCCGAGGGGCGGTTGCGAGAAGGGAGAGGACGG
TGGTCACACTCGTGGTGGAGGGGGGGGAGGCAGAGGGTAAGGGGGTGGGG
CTTGGGAGCATGCTTGCTTCGATAAATGGAGAAGATGTCACGGGGTTGAC
TTACAAAGAGACGTTGGAGAGGATTAAGAGCCAGGCGAGGCCAATGACGG
TTGTGTTTGAGCGGGAAAGCTTGAAAGAGGAGGTGTTGCAGGGATATTTT
TTCGTGAGCAAGGGACCGTTTTTCTCAAACCCGACCACGATGGACAAGTG
GAAGAGGAAGTACATTGTCCTCGGGGGACCGATTGCCAAAAAGAACGTCT
TTCAGATTTATGATTCGAAACGGGCGTACCATAACACTGTCGTGGCCTTG
TTCCAGCGCAAGCGGCCCGCGCATCGCGTGAAGACGTATGCGTTGACGTA
TGCCTTCAAGCTCTCTCCATTGCAGGAACGGAAGATGGAGGGACATACCG
CCCCTTTGAAATTTTTCGCATTTATGACTCCAGCGGCGAGGTTCAAGAGT
ATTCGAATAGCGAGTGAGACGAGGAAGAACGTGGCGGCATTGCATGAGAG
ATTCGGGCGGTTTGCAGGCAAAAGCCAGGGAGCAAGATAG
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Coding sequence (CDS) from alignment at chr1:1141884..1144073+

>NO01G04270.1 ID=NO01G04270.1|Name=NO01G04270.1|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at chr1:1141884..1144073+ (Nannochloropsis oceanica)
ATGACGCTGTGGACCAGCCCCGTACCGATGCATATGACGGGCAAGGAGGT
CACGGCACCACGGATGGACACCCTTAACCAACAAGAAAGAAACGTCTCCA
CCCCCGTCTCGGCCCCCCTCGCCGCCCAGGGCGCTAGCGCCGGCGCTGGA
CGTAGCAGCAGTAGCTCGAGCAACAATGCACCATCGCAACGTCGCCAAAC
TCTGGGGACGGTTCCGTCGGCGGCAGAAATACACCAAAGCCAAGAGAAAT
GGCTTGAATTCGCCCCCACTTCTCCCCAACGACGTGCCTCCTTTGTCAGC
GAGCCTGGCGCAATTGATGGGAACCCCTTCGAGATCTTCAAGGAGCCCGC
ACGCATTGATAGCCTTGGCACACAAAAGCAAAGTTTCTATGAGGCAGGGA
CATCCTACTCCGTCAAACAACATGCCCCCCCCCTTTCCTCAGCCTCTTCC
CCTCCCCCCTCTATTCCGCCTCCCCCAACTACCACCCAATGCAACACCAC
TTTCGCCTCCTCCTCCTCGTCCCTTGGTCTGAACTCTTCCCGCCCAGCTT
CTCGAAGTTCCAACCCGTTCTACGAAGCTCCCCTGAGCCCGATTCGTTAC
AACAAGCCCGTGGCGAAAGTTGAACTTTCTCCTCAAAGCTCGGCTTTGTC
CACTGCAGCGTTTATGGAACTGAACCCTCTCAGGCGAACGGAGTCCCCCA
CCGCATCTATCCCCTTGGATCAATTGAAGTTAGTAACATACAATAAAGAG
CAGGCGGCGATTGCGGCGGCAGTGGCGGCACAGCAGCAGGAGCAGATGCA
GCAGGAGAGATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGTGGGGGGCATGGCCTCAGCAACAGCGACAG
CAGCAGCAGCAGTGGGGGGCATGGCCACAGCAACAACAGCAGCACCAGCC
GCCGACGGAATGGGGTGCATTTGGGTCCGCTCAACCCAAACAGCAATCGC
AGCAGCAACAACAACAACAACAACAACAGCAACAGCAGGAGGGGTTTGGA
GACTCTTTTTGTTGGCCTCCGGCTGCAGGCCCCAGGGAAAGAGCAGCATC
AGTAGGGACTGTAGCCAAGGCGCCCAACTCGGACGAATTAAACCTTTTCC
TGAGTGGTGTTGGAGGAGGGAAAGAGGGGGGAGGAGGGGCGATTTTTGAC
CCTGTCCGACAGAAATCTCTGGCGGAAAGTTCGTTTGATTTAAGCGTGGG
AGCCTTCTTTCCTGAAGAGGCTGTGGCGAAGGAGGGAGGAAGAGCGAGGA
GGAGCAGCAGCAGGATGGGGTATGGAGAGGAAGAGGAGGAAGATGAGGAG
GAGGAGCCGGTGGACCACCATGATGAGGAGGACGACGGGTCAACCGGGGG
GGATGGGATAGGGGGATTGGAGATGCAGGATGACCATTTTCGCCATGAGG
GGGAAGGGGGGAGGGAAGGGAGGGGGGTAAACGAAGGGGCATCGGGCATG
TATTATGAGGTGACGTTCACAGCGCCGACTACGTTTGGGATGTTGTTGGA
GAGGAAGGATGAGTGGACCCGAGGGGCGGTTGCGAGAAGGGAGAGGACGG
TGGTCACACTCGTGGTGGAGGGGGGGGAGGCAGAGGGTAAGGGGGTGGGG
CTTGGGAGCATGCTTGCTTCGATAAATGGAGAAGATGTCACGGGGTTGAC
TTACAAAGAGACGTTGGAGAGGATTAAGAGCCAGGCGAGGCCAATGACGG
TTGTGTTTGAGCGGGAAAGCTTGAAAGAGGAGGTGTTGCAGGGATATTTT
TTCGTGAGCAAGGGACCGTTTTTCTCAAACCCGACCACGATGGACAAGTG
GAAGAGGAAGTACATTGTCCTCGGGGGACCGATTGCCAAAAAGAACGTCT
TTCAGATTTATGATTCGAAACGGGCGTACCATAACACTGTCGTGGCCTTG
TTCCAGCGCAAGCGGCCCGCGCATCGCGTGAAGACGTATGCGTTGACGTA
TGCCTTCAAGCTCTCTCCATTGCAGGAACGGAAGATGGAGGGACATACCG
CCCCTTTGAAATTTTTCGCATTTATGACTCCAGCGGCGAGGTTCAAGAGT
ATTCGAATAGCGAGTGAGACGAGGAAGAACGTGGCGGCATTGCATGAGAG
ATTCGGGCGGTTTGCAGGCAAAAGCCAGGGAGCAAGATAG
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Synonyms
Publications