NO01G04230.1, NO01G04230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04230.1
Unique NameNO01G04230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr1:1130356..1132100 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1130356..1132100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G04230.1 vs.
Match: XP_005855128.1 (serine threonine-protein phosphatase 4 catalytic subunit [Nannochloropsis gaditana CCMP526]; EKU21227.1 serine threonine-protein phosphatase 4 catalytic subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 616.3 bits (1588), Expect = 5.100e-173
Identity = 294/317 (92.74%), Postives = 304/317 (95.90%), Query Frame = 0 
Query:    1 MASTSDLDEQIERLRRCEYLKEQEVKVLCQKAREILVDESNVQKVDAPVTICGDIHGQFYDLMELFRVGGDCPERNYLFLGDFVDRGYYSVETFLLLLALKVRYPQRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTEIFDYLSLSAIIDDNIFCVHGGLSPSINTIDQ----------IRVIDRKQEVPHEGAMCDLMWSDPEEIDGWGLSPRGAGYQFGGDVVEKFNQMNGLRLIARAHQLVMEGHKEMFNNQLVTIWSAPNYCYRCGNVAAILEFDERCVQSFKIFEAAPQEVRGVPQKNPAPDYFL 308
            MASTSDLD+QIERLRRCEYLKEQEVK+LCQKAREILVDESNVQ+VDAPVTICGDIHGQFYDLMELF+VGGDCPERNYLFLGDFVDRGYYSVETFLLLLALKVRYP+RITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTEIFDYLSLSAII+DNIFCVHGGLSPSINTIDQ          IRVIDRKQEVPHEGAMCDLMWSDPE+I GWGLSPRGAGYQFGGDVVEKFNQ N LRLIARAHQLVMEGHKEMF+N+LVTIWSAPNYCYRCGNVAAILEFDERCVQSFKIFEAAPQEVRG+PQKNPAPDYFL
Sbjct:    1 MASTSDLDDQIERLRRCEYLKEQEVKLLCQKAREILVDESNVQRVDAPVTICGDIHGQFYDLMELFKVGGDCPERNYLFLGDFVDRGYYSVETFLLLLALKVRYPERITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTEIFDYLSLSAIINDNIFCVHGGLSPSINTIDQVRAEEGKEERIRVIDRKQEVPHEGAMCDLMWSDPEDISGWGLSPRGAGYQFGGDVVEKFNQTNDLRLIARAHQLVMEGHKEMFDNKLVTIWSAPNYCYRCGNVAAILEFDERCVQSFKIFEAAPQEVRGIPQKNPAPDYFL 317
The following BLAST results are available for this feature:
BLAST of NO01G04230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855128.15.100e-17392.74serine threonine-protein phosphatase 4 catalytic s... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04230NO01G04230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04230.1NO01G04230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04230.1.cds1NO01G04230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04230.1.cds2NO01G04230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04230.1.cds3NO01G04230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04230.1.cds4NO01G04230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04230.1.cds5NO01G04230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04230.1.cds6NO01G04230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04230.1 ID=NO01G04230.1|Name=NO01G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
ATGGCATCCACCAGCGACTTGGACGAGCAGATTGAGAGGCTTAGGCGGTG
CGAATACTTAAAGGAGCAAGAGGTAAAGGTGTTGTGCCAGAAGGCCCGGG
AAATTCTAGTGGACGAGTCGAACGTCCAGAAGGTCGATGCTCCCGTCACA
ATATGCGGGGATATCCACGGGCAATTTTATGATTTGATGGAGCTATTCAG
GGTCGGTGGCGACTGCCCCGAGCGCAACTACCTTTTCCTCGGGGATTTTG
TGGACCGCGGTTACTACTCTGTCGAAACGTTTCTACTCTTGCTCGCTCTG
AAGGTGCGATACCCTCAAAGAATCACGCTGATACGAGGCAACCATGAGAG
CAGGCAGATCACGCAGGTCTATGGGTTCTACGATGAGTGCTTACGAAAGT
ACGGCAGCGTTAATGTCTGGCGCTACTGCACCGAAATCTTCGATTACTTG
AGCTTGTCGGCCATTATAGACGATAACATCTTTTGCGTCCATGGTGGCTT
GAGCCCATCGATCAACACCATTGACCAGATCCGCGTGATAGACCGCAAGC
AAGAGGTGCCTCACGAGGGCGCCATGTGCGACCTTATGTGGTCCGATCCC
GAGGAGATCGATGGGTGGGGCCTAAGCCCACGCGGGGCCGGGTATCAATT
CGGAGGGGACGTGGTTGAGAAGTTTAATCAGATGAATGGCCTGCGCTTGA
TTGCACGCGCGCATCAGCTGGTCATGGAAGGGCACAAGGAAATGTTCAAC
AACCAACTTGTCACCATTTGGTCCGCGCCCAATTACTGCTATCGGTGTGG
GAACGTCGCAGCGATTTTGGAGTTCGATGAGAGGTGCGTCCAGTCCTTTA
AGATCTTTGAGGCAGCGCCTCAGGAGGTCCGAGGGGTGCCACAGAAGAAC
CCAGCACCGGATTACTTTTTGTAA
back to top

protein sequence of NO01G04230.1

>NO01G04230.1-protein ID=NO01G04230.1-protein|Name=NO01G04230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MASTSDLDEQIERLRRCEYLKEQEVKVLCQKAREILVDESNVQKVDAPVT
ICGDIHGQFYDLMELFRVGGDCPERNYLFLGDFVDRGYYSVETFLLLLAL
KVRYPQRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTEIFDYL
SLSAIIDDNIFCVHGGLSPSINTIDQIRVIDRKQEVPHEGAMCDLMWSDP
EEIDGWGLSPRGAGYQFGGDVVEKFNQMNGLRLIARAHQLVMEGHKEMFN
NQLVTIWSAPNYCYRCGNVAAILEFDERCVQSFKIFEAAPQEVRGVPQKN
PAPDYFL*
back to top

mRNA from alignment at chr1:1130356..1132100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04230.1 ID=NO01G04230.1|Name=NO01G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1745bp|location=Sequence derived from alignment at chr1:1130356..1132100- (Nannochloropsis oceanica)
ATGGCATCCACCAGCGACTTGGACGAGCAGATTGAGAGGCTTAGGTAAGA
AGAGTGTAGGTAGGGTAGTGCCAGGAGGGGATGATGAGGCGGAGGGGAAT
AAGGAAGGAGTGGCAGAGTGTGTGTGTTTTTTAAATGGATGAAGCGCAGT
CCTTTCGTTGCACTCACAAACTTGCATTCATAATAGGCGGTGCGAATACT
TAAAGGAGCAAGAGGTAAAGGTGTTGTGCCAGAAGGCCCGGGAAATTCTA
GTGGACGAGTCGAACGTCCAGAAGGTCGATGCTCCCGTCACAATATGCGG
GGATATCCACGGGCAATTTTATGATTTGATGGAGGTACGTTCATGAAATG
GCAAAGGGGCTATGACAGCAGAGAAGGAGAGACGAGCGATGGACGTGGGA
GGTGCCATGACTGTACGACCTCTTCGCCCGTGGCTGGGAATGGAGAGGCC
TTTTTAACTTAACCACCTCCTTCCTTCTTCCCTCCCTGCCTTCCACCCTC
ACTCCACCCGCAGCTATTCAGGGTCGGTGGCGACTGCCCCGAGCGCAACT
ACCTTTTCCTCGGGGATTTTGTGGACCGCGGTTACTACTCTGTCGAAACG
TTTCTACTCTTGCTCGCTCTGAAGGTGCGATACCCTCAAAGAATCACGCT
GATACGAGGCAACCATGAGAGCAGGCAGATCACGCAGGTAGGGAGGGAGG
GAAAGAAGGACGGGGGAAGGAAAGAGGGCACTGGAGGGATAGAAAGGCTG
GTAAACGTGGGCGGGAGGGAGGGATGTACACGCTCCCTTCTCATCTCTGT
TGGGCAGCCACTGAGAAACTGTCGAGCAGACACTCAGCCCTCCCTCCTTC
CCTCCCCTCCTCCCTCCCCTTCTAGGTCTATGGGTTCTACGATGAGTGCT
TACGAAAGTACGGCAGCGTTAATGTCTGGCGCTACTGCACCGAAATCTTC
GATTACTTGAGCTTGTCGGCCATTATAGACGATAACATCTTTTGCGTCCA
TGGTGGCTTGAGCCCATCGATCAACACCATTGACCAGGTCGGCCGCTTCC
TCCATCCCTCCCTTCCTCCCTCTCGCCTCCCTCCCTCTCACTACTCTACT
TGCCTCAGTCATGCTTGACCCTGTGTAGGTAGACATATCCACCTGTCCCT
CCCTCCCTCCCTCCCTCCTCGTAGATCCGCGTGATAGACCGCAAGCAAGA
GGTGCCTCACGAGGGCGCCATGTGCGACCTTATGTGGTCCGATCCCGAGG
AGATCGATGGGTGGGGCCTAAGCCCACGCGGGGCCGGGTATCAATTCGGA
GGGGACGTGGTTGAGAAGTTTAATCAGATGAATGGCCTGCGCTTGATTGC
ACGCGCGCATCAGCTGGTAGGGATGTCGGGGGAGGGACGGAGGGAGGGAC
TGAGGGAGGGACGGGGGGGCGCCAGGCTTTGTTTTTCCTTATGAATTTGA
TGTTTCCTTGCCCTTAACACTCGCACCGTCTCCTTCCTCCCTCCCTCCCT
CCCTCCCTCTTTCCCCCACCCGCTCACGCACCTCTGTCCAGGTCATGGAA
GGGCACAAGGAAATGTTCAACAACCAACTTGTCACCATTTGGTCCGCGCC
CAATTACTGCTATCGGTGTGGGAACGTCGCAGCGATTTTGGAGTTCGATG
AGAGGTGCGTCCAGTCCTTTAAGATCTTTGAGGCAGCGCCTCAGGAGGTC
CGAGGGGTGCCACAGAAGAACCCAGCACCGGATTACTTTTTGTAA
back to top

Coding sequence (CDS) from alignment at chr1:1130356..1132100-

>NO01G04230.1 ID=NO01G04230.1|Name=NO01G04230.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr1:1130356..1132100- (Nannochloropsis oceanica)
ATGGCATCCACCAGCGACTTGGACGAGCAGATTGAGAGGCTTAGGCGGTG
CGAATACTTAAAGGAGCAAGAGGTAAAGGTGTTGTGCCAGAAGGCCCGGG
AAATTCTAGTGGACGAGTCGAACGTCCAGAAGGTCGATGCTCCCGTCACA
ATATGCGGGGATATCCACGGGCAATTTTATGATTTGATGGAGCTATTCAG
GGTCGGTGGCGACTGCCCCGAGCGCAACTACCTTTTCCTCGGGGATTTTG
TGGACCGCGGTTACTACTCTGTCGAAACGTTTCTACTCTTGCTCGCTCTG
AAGGTGCGATACCCTCAAAGAATCACGCTGATACGAGGCAACCATGAGAG
CAGGCAGATCACGCAGGTCTATGGGTTCTACGATGAGTGCTTACGAAAGT
ACGGCAGCGTTAATGTCTGGCGCTACTGCACCGAAATCTTCGATTACTTG
AGCTTGTCGGCCATTATAGACGATAACATCTTTTGCGTCCATGGTGGCTT
GAGCCCATCGATCAACACCATTGACCAGATCCGCGTGATAGACCGCAAGC
AAGAGGTGCCTCACGAGGGCGCCATGTGCGACCTTATGTGGTCCGATCCC
GAGGAGATCGATGGGTGGGGCCTAAGCCCACGCGGGGCCGGGTATCAATT
CGGAGGGGACGTGGTTGAGAAGTTTAATCAGATGAATGGCCTGCGCTTGA
TTGCACGCGCGCATCAGCTGGTCATGGAAGGGCACAAGGAAATGTTCAAC
AACCAACTTGTCACCATTTGGTCCGCGCCCAATTACTGCTATCGGTGTGG
GAACGTCGCAGCGATTTTGGAGTTCGATGAGAGGTGCGTCCAGTCCTTTA
AGATCTTTGAGGCAGCGCCTCAGGAGGTCCGAGGGGTGCCACAGAAGAAC
CCAGCACCGGATTACTTTTTGTAA
back to top
Synonyms
Publications