NO01G04220.1, NO01G04220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04220.1
Unique NameNO01G04220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr1:1128302..1129663 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1128302..1129663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04220.1 vs.
Match: ATB53140.1 (diacylglycerol acyltransferase [Nannochloropsis oceanica strain IMET1])

HSP 1 Score: 818.5 bits (2113), Expect = 8.600e-234
Identity = 390/391 (99.74%), Postives = 391/391 (100.00%), Query Frame = 0 
Query:    1 MKKILRIPESPISDDTLVKNGGKKTELSTPVTAPTSDRTRIYSDGYSTPKSYTLEVDPKFYKRVCDADDVWTRTQGAFALLMLWGVWLAGSFSVFWWPYLVMKGYYTAALVMAVIMAYPYVVKVKQSPAFIRFILSGAGWFKGGTCLYLEESMKQIDTSESVLLCQHPHGLFTYGFIQNGSAARIDARKPEVYVPAAFRHMKPNAKAFVEPLLFKIPLIRHFITAFGNAAPATKKEMHRLMSTKIPLGLLPGGSEEIILSHHGHERAYILKRKGFLKYALQHGYTICIGYTFGESDSYRTLDWGVKFRMWYLKTFRVPLFACWGIWWCPLLPRGQVALETVVGNPFRLPKISDPSQEDIDKWHAVYVQKLVDLFDRNKAKFGYGDRELELY 392
            MKKILRIPESPISDDTLVKNGGK+TELSTPVTAPTSDRTRIYSDGYSTPKSYTLEVDPKFYKRVCDADDVWTRTQGAFALLMLWGVWLAGSFSVFWWPYLVMKGYYTAALVMAVIMAYPYVVKVKQSPAFIRFILSGAGWFKGGTCLYLEESMKQIDTSESVLLCQHPHGLFTYGFIQNGSAARIDARKPEVYVPAAFRHMKPNAKAFVEPLLFKIPLIRHFITAFGNAAPATKKEMHRLMSTKIPLGLLPGGSEEIILSHHGHERAYILKRKGFLKYALQHGYTICIGYTFGESDSYRTLDWGVKFRMWYLKTFRVPLFACWGIWWCPLLPRGQVALETVVGNPFRLPKISDPSQEDIDKWHAVYVQKLVDLFDRNKAKFGYGDRELELY
Sbjct:    1 MKKILRIPESPISDDTLVKNGGKETELSTPVTAPTSDRTRIYSDGYSTPKSYTLEVDPKFYKRVCDADDVWTRTQGAFALLMLWGVWLAGSFSVFWWPYLVMKGYYTAALVMAVIMAYPYVVKVKQSPAFIRFILSGAGWFKGGTCLYLEESMKQIDTSESVLLCQHPHGLFTYGFIQNGSAARIDARKPEVYVPAAFRHMKPNAKAFVEPLLFKIPLIRHFITAFGNAAPATKKEMHRLMSTKIPLGLLPGGSEEIILSHHGHERAYILKRKGFLKYALQHGYTICIGYTFGESDSYRTLDWGVKFRMWYLKTFRVPLFACWGIWWCPLLPRGQVALETVVGNPFRLPKISDPSQEDIDKWHAVYVQKLVDLFDRNKAKFGYGDRELELY 391
The following BLAST results are available for this feature:
BLAST of NO01G04220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ATB53140.18.600e-23499.74diacylglycerol acyltransferase [Nannochloropsis oc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04220NO01G04220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04220.1NO01G04220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04220.1.cds1NO01G04220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04220.1.cds2NO01G04220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04220.1 ID=NO01G04220.1|Name=NO01G04220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGAAGAAAATCTTGCGCATCCCGGAGTCGCCCATCTCGGACGACACCCT
GGTGAAGAATGGAGGCAAGAAGACCGAGCTCTCCACGCCGGTCACCGCTC
CTACGTCGGACCGCACGCGCATCTACAGTGATGGCTATTCGACCCCCAAG
TCCTACACATTGGAAGTCGATCCAAAATTTTACAAGCGAGTATGTGATGC
TGACGATGTGTGGACACGCACACAGGGGGCCTTTGCTCTCCTCATGCTCT
GGGGCGTTTGGCTTGCCGGGTCCTTTTCTGTGTTTTGGTGGCCCTATTTA
GTAATGAAGGGGTACTACACTGCAGCCCTTGTCATGGCAGTGATCATGGC
ATATCCGTATGTTGTCAAGGTCAAGCAAAGCCCGGCATTTATTCGGTTCA
TCTTGAGCGGCGCGGGTTGGTTTAAGGGCGGGACTTGTTTGTATTTGGAG
GAGTCGATGAAGCAGATCGACACCAGCGAGTCTGTCCTCCTCTGCCAGCA
TCCGCACGGTCTCTTCACCTACGGCTTCATTCAGAACGGGTCCGCCGCCC
GCATCGATGCCCGCAAACCAGAGGTTTATGTGCCTGCCGCATTTCGTCAC
ATGAAACCCAACGCCAAGGCCTTCGTGGAGCCCTTGCTTTTCAAAATCCC
GCTCATCCGTCACTTCATTACCGCCTTCGGCAATGCCGCTCCGGCGACAA
AGAAAGAAATGCACCGGCTCATGTCCACCAAAATTCCCCTGGGGCTTCTA
CCCGGTGGGTCGGAAGAGATCATACTAAGCCACCACGGCCATGAGCGGGC
CTACATACTTAAACGGAAAGGCTTCCTCAAGTACGCATTACAACATGGCT
ACACGATTTGCATTGGATACACGTTCGGGGAGTCCGACTCGTACCGCACC
TTGGACTGGGGCGTGAAGTTTCGTATGTGGTATCTGAAAACCTTCCGTGT
TCCACTTTTCGCGTGCTGGGGGATTTGGTGGTGTCCCCTCTTGCCGCGGG
GGCAGGTGGCGCTTGAGACAGTCGTTGGGAACCCGTTTCGGTTGCCCAAG
ATCTCAGATCCGAGCCAGGAGGATATTGACAAGTGGCATGCGGTGTATGT
GCAAAAACTTGTGGATCTGTTTGATCGGAACAAAGCCAAGTTCGGGTATG
GGGACAGGGAGCTGGAGCTTTATTAG
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protein sequence of NO01G04220.1

>NO01G04220.1-protein ID=NO01G04220.1-protein|Name=NO01G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MKKILRIPESPISDDTLVKNGGKKTELSTPVTAPTSDRTRIYSDGYSTPK
SYTLEVDPKFYKRVCDADDVWTRTQGAFALLMLWGVWLAGSFSVFWWPYL
VMKGYYTAALVMAVIMAYPYVVKVKQSPAFIRFILSGAGWFKGGTCLYLE
ESMKQIDTSESVLLCQHPHGLFTYGFIQNGSAARIDARKPEVYVPAAFRH
MKPNAKAFVEPLLFKIPLIRHFITAFGNAAPATKKEMHRLMSTKIPLGLL
PGGSEEIILSHHGHERAYILKRKGFLKYALQHGYTICIGYTFGESDSYRT
LDWGVKFRMWYLKTFRVPLFACWGIWWCPLLPRGQVALETVVGNPFRLPK
ISDPSQEDIDKWHAVYVQKLVDLFDRNKAKFGYGDRELELY*
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mRNA from alignment at chr1:1128302..1129663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04220.1 ID=NO01G04220.1|Name=NO01G04220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at chr1:1128302..1129663- (Nannochloropsis oceanica)
ATGAAGAAAATCTTGCGCATCCCGGAGTCGCCCATCTCGGACGACACCCT
GGTGAAGAATGGAGGCAAGAAGACCGAGCTCTCCACGCCGGTCACCGCTC
CTACGTCGGACCGCACGCGCATCTACAGTGATGGCTATTCGACCCCCAAG
TCCTACACATTGGAAGTCGATCCAAAATTTTACAAGCGAGTATGTGATGC
TGACGATGTGTGGACACGCACACAGGGGGCCTTTGCTCTCCTCATGCTCT
GGGGCGTTTGGCTTGCCGGGTCCTTTTCTGTGTTTTGGTGGCCCTATTTA
GTAATGAAGGGGTACTACACTGCAGCCCTTGTCATGGCAGTGATCATGGC
ATATCCGTATGTTGTCAAGGTCAAGCAAAGCCCGGCATTTATTCGGTTCA
TCTTGAGCGGCGCGGGTTGGTTTAAGGGCGGGACTTGTTTGTATTTGGAG
GAGTCGATGAAGCAGATCGACACCAGCGAGGTACGTCACGCCAAGCGCGA
TTAAAGTGGATATAGTGACGCTTGTATGTTGCAGTTGAGACTTTCATGTG
CCTCCATTTCTGTGCTGGCGCTTTCCTTTCGTGGTATTCCCTCCTACCCT
CTTCCTCATCATCCAACCCCGTGCTTACTCGTCCTCATCCTCCACTCATT
CCCAACCTACGATTAGTCTGTCCTCCTCTGCCAGCATCCGCACGGTCTCT
TCACCTACGGCTTCATTCAGAACGGGTCCGCCGCCCGCATCGATGCCCGC
AAACCAGAGGTTTATGTGCCTGCCGCATTTCGTCACATGAAACCCAACGC
CAAGGCCTTCGTGGAGCCCTTGCTTTTCAAAATCCCGCTCATCCGTCACT
TCATTACCGCCTTCGGCAATGCCGCTCCGGCGACAAAGAAAGAAATGCAC
CGGCTCATGTCCACCAAAATTCCCCTGGGGCTTCTACCCGGTGGGTCGGA
AGAGATCATACTAAGCCACCACGGCCATGAGCGGGCCTACATACTTAAAC
GGAAAGGCTTCCTCAAGTACGCATTACAACATGGCTACACGATTTGCATT
GGATACACGTTCGGGGAGTCCGACTCGTACCGCACCTTGGACTGGGGCGT
GAAGTTTCGTATGTGGTATCTGAAAACCTTCCGTGTTCCACTTTTCGCGT
GCTGGGGGATTTGGTGGTGTCCCCTCTTGCCGCGGGGGCAGGTGGCGCTT
GAGACAGTCGTTGGGAACCCGTTTCGGTTGCCCAAGATCTCAGATCCGAG
CCAGGAGGATATTGACAAGTGGCATGCGGTGTATGTGCAAAAACTTGTGG
ATCTGTTTGATCGGAACAAAGCCAAGTTCGGGTATGGGGACAGGGAGCTG
GAGCTTTATTAG
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Coding sequence (CDS) from alignment at chr1:1128302..1129663-

>NO01G04220.1 ID=NO01G04220.1|Name=NO01G04220.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr1:1128302..1129663- (Nannochloropsis oceanica)
ATGAAGAAAATCTTGCGCATCCCGGAGTCGCCCATCTCGGACGACACCCT
GGTGAAGAATGGAGGCAAGAAGACCGAGCTCTCCACGCCGGTCACCGCTC
CTACGTCGGACCGCACGCGCATCTACAGTGATGGCTATTCGACCCCCAAG
TCCTACACATTGGAAGTCGATCCAAAATTTTACAAGCGAGTATGTGATGC
TGACGATGTGTGGACACGCACACAGGGGGCCTTTGCTCTCCTCATGCTCT
GGGGCGTTTGGCTTGCCGGGTCCTTTTCTGTGTTTTGGTGGCCCTATTTA
GTAATGAAGGGGTACTACACTGCAGCCCTTGTCATGGCAGTGATCATGGC
ATATCCGTATGTTGTCAAGGTCAAGCAAAGCCCGGCATTTATTCGGTTCA
TCTTGAGCGGCGCGGGTTGGTTTAAGGGCGGGACTTGTTTGTATTTGGAG
GAGTCGATGAAGCAGATCGACACCAGCGAGTCTGTCCTCCTCTGCCAGCA
TCCGCACGGTCTCTTCACCTACGGCTTCATTCAGAACGGGTCCGCCGCCC
GCATCGATGCCCGCAAACCAGAGGTTTATGTGCCTGCCGCATTTCGTCAC
ATGAAACCCAACGCCAAGGCCTTCGTGGAGCCCTTGCTTTTCAAAATCCC
GCTCATCCGTCACTTCATTACCGCCTTCGGCAATGCCGCTCCGGCGACAA
AGAAAGAAATGCACCGGCTCATGTCCACCAAAATTCCCCTGGGGCTTCTA
CCCGGTGGGTCGGAAGAGATCATACTAAGCCACCACGGCCATGAGCGGGC
CTACATACTTAAACGGAAAGGCTTCCTCAAGTACGCATTACAACATGGCT
ACACGATTTGCATTGGATACACGTTCGGGGAGTCCGACTCGTACCGCACC
TTGGACTGGGGCGTGAAGTTTCGTATGTGGTATCTGAAAACCTTCCGTGT
TCCACTTTTCGCGTGCTGGGGGATTTGGTGGTGTCCCCTCTTGCCGCGGG
GGCAGGTGGCGCTTGAGACAGTCGTTGGGAACCCGTTTCGGTTGCCCAAG
ATCTCAGATCCGAGCCAGGAGGATATTGACAAGTGGCATGCGGTGTATGT
GCAAAAACTTGTGGATCTGTTTGATCGGAACAAAGCCAAGTTCGGGTATG
GGGACAGGGAGCTGGAGCTTTATTAG
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Synonyms
Publications