NO01G04030.1, NO01G04030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04030.1
Unique NameNO01G04030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length936
Alignment locationchr1:1078675..1079610 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1078675..1079610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04030.1 vs.
Match: EWM29340.1 (abortive infection protein [Nannochloropsis gaditana])

HSP 1 Score: 347.1 bits (889), Expect = 5.900e-92
Identity = 192/256 (75.00%), Postives = 209/256 (81.64%), Query Frame = 0 
Query:   55 SSSSFASSTSRASPSSPFLRRRWRPLFQQQPPAGEELSGPTLSKDMSPIPPPSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWG--GGKRGKEA 309
            SSSSFA++TSR      F  ++ +PLFQQ+PP  E  S      D   IPPP+  P SPNYKTIAAL+ GELLLGLLAFP+GH FKINPLATAKA  GFGPL AVSALLTLPALLLH  SGREIEDMLRESLEGIFGS+TAKK+P VVIAISVLLSLSAGMGEEVAFRGALQPI +Q T  P  GLGISS IFAALHAATPRYFLLALVLSVYLG LQ+RY NLWVP++VHTLFDVVGF+QNHFWG  G K G E+
Sbjct:   49 SSSSFATTTSRTG----FPCQKRQPLFQQKPPDSEAPSPEVTPSDQPSIPPPAI-PRSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALLTLPALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHWGRKTGGES 299
The following BLAST results are available for this feature:
BLAST of NO01G04030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29340.15.900e-9275.00abortive infection protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04030NO01G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04030.1NO01G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04030.1.cds1NO01G04030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04030.1 ID=NO01G04030.1|Name=NO01G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
ATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCCT
CTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATGA
GCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTTA
TCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTTC
GCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAAC
AACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACATG
TCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAAC
CATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTCC
CTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACCG
ATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTGC
CTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGGG
AATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTTG
GTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGGA
AGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACAA
ATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCTT
CATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTATA
TTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATGG
TGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGGT
GGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAA
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protein sequence of NO01G04030.1

>NO01G04030.1-protein ID=NO01G04030.1-protein|Name=NO01G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MAARSPSSRSLLAALLLFLPFVAHGFVFPQTRMSNILPSSRVQSTLIASL
STSSSSSSFASSTSRASPSSPFLRRRWRPLFQQQPPAGEELSGPTLSKDM
SPIPPPSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAP
MGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPL
VVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAAL
HAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWG
GGKRGKEANTA*
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mRNA from alignment at chr1:1078675..1079610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04030.1 ID=NO01G04030.1|Name=NO01G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=936bp|location=Sequence derived from alignment at chr1:1078675..1079610+ (Nannochloropsis oceanica)
ATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCCT
CTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATGA
GCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTTA
TCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTTC
GCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAAC
AACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACATG
TCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAAC
CATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTCC
CTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACCG
ATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTGC
CTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGGG
AATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTTG
GTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGGA
AGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACAA
ATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCTT
CATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTATA
TTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATGG
TGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGGT
GGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAA
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Coding sequence (CDS) from alignment at chr1:1078675..1079610+

>NO01G04030.1 ID=NO01G04030.1|Name=NO01G04030.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr1:1078675..1079610+ (Nannochloropsis oceanica)
ATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCCT
CTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATGA
GCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTTA
TCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTTC
GCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAAC
AACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACATG
TCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAAC
CATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTCC
CTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACCG
ATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTGC
CTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGGG
AATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTTG
GTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGGA
AGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACAA
ATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCTT
CATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTATA
TTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATGG
TGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGGT
GGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAA
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Synonyms
Publications