NO01G03890.1, NO01G03890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03890.1
Unique NameNO01G03890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1249
Alignment locationchr1:1038894..1040273 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1038894..1040273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03890.1 vs.
Match: XP_005854882.1 (hypothetical protein NGA_2084900, partial [Nannochloropsis gaditana CCMP526]; EKU21478.1 hypothetical protein NGA_2084900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 302.0 bits (772), Expect = 2.000e-78
Identity = 142/162 (87.65%), Postives = 153/162 (94.44%), Query Frame = 0 
Query:  119 ITMKGLPDPQHTIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281
            + MKG  DP HT+KRICATNKYAKSSYEIGKKFEAGISLVGTE+GPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQH EKRPRRLLVHKKE+LEL YAS RDGQTIVPL IYLTATHR+KVEVAIGRGIKKYDKREA K+REIKRGFE+++K++
Sbjct:  116 LVMKGAADPHHTVKRICATNKYAKSSYEIGKKFEAGISLVGTEIGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHAEKRPRRLLVHKKEILELKYASDRDGQTIVPLCIYLTATHRVKVEVAIGRGIKKYDKREAVKQREIKRGFERLLKTY 277
The following BLAST results are available for this feature:
BLAST of NO01G03890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854882.12.000e-7887.65hypothetical protein NGA_2084900, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03890NO01G03890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03890.1NO01G03890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03890.1.cds1NO01G03890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03890.1.cds2NO01G03890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03890.1 ID=NO01G03890.1|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp
GGTGGATTTGAGCTCTTCACCTTTTTTGCTATAATCGATTCGGCGAACCC
CGACCCGGAAATAGAGGGCAGGGGGATAACTGAAAGCCAAATATAAACCC
ACGCCTAAGGGTCGCAAAAGTCATTTAGAGGACAAGCACACAGCATTCGG
CAGATCCATGGACCCGCGCTTGAGCCTCTTGTATTGGTTTTCGTGAGGTT
TGGCAGAAAGGAGATGTAGTATATGTGATACACCTCACCGGAGCTTCTTA
CCACCACCACACCGACGTAGCGTACCGCCCGCGACATCTTCGGCATGTGG
CCATTGTCAAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACCACGGAG
CGCTGCCACGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGTGGTCAT
CCTCGTGGTCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTCGGATTT
GTCCTCCTCACCAGTGCCTGCTGTCACGCTATCCAGTACAACACTCTTTC
CACTAAAGGACTACAACGATGTTCACCATCATCCCAGGTATCGACTGCTT
TCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTCGGTCCT
ATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTGCATTAT
TACCATGAAAGGCCTCCCCGATCCACAACATACCATCAAACGTATCTGCG
CCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCAAGAAGTTCGAA
GCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTCTGGACA
GTGTCAATTAAGAGACGCGTATTGTCGCGTGCGTGATGGGGAGCTATGGA
TTCATAATCTGTTCATTGGACCACACAAGACGACGGGAAAATATTTCCAG
CATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGAGGTCTT
GGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCATTGTACCATTGA
AGATTTATTTGACAGCAACGCACAGGATAAAGGTGGAAGTGGCCATAGGA
CGGGGCATCAAGAAATACGACAAGCGTGAGGCGGCAAAGGAACGGGAGAT
CAAGCGGGGCTTCGAGAAGATTATGAAAAGTTTCTAACTTTGCTTGTTTT
TGGAATGAAAAGGACCGGAAAATAATCAAAAAATGAATCAAATACGCACA
TTAATTAAATGAGCATGGTCACCCAGCCTTACGGTCAGCTAGGAAAAAA
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protein sequence of NO01G03890.1

>NO01G03890.1-protein ID=NO01G03890.1-protein|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MWPLSNSSPHAWVRTRPRSAATPSASSSSSSSSWSSSWSSSNLPFPLFML
GFVLLTSACCHAIQYNTLSTKGLQRCSPSSQVSTAFGSSTAFGTSPPTLF
GPIFPPLPCRPSSSSSCIITMKGLPDPQHTIKRICATNKYAKSSYEIGKK
FEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKY
FQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVA
IGRGIKKYDKREAAKEREIKRGFEKIMKSF*
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mRNA from alignment at chr1:1038894..1040273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03890.1 ID=NO01G03890.1|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at chr1:1038894..1040273+ (Nannochloropsis oceanica)
GGTGGATTTGAGCTCTTCACCTTTTTTGCTATAATCGATTCGGCGAACCC
CGACCCGGAAATAGAGGGCAGGGGGATAACTGAAAGCCAAATATAAACCC
ACGCCTAAGGGTCGCAAAAGTCATTTAGAGGACAAGCACACAGCATTCGG
CAGATCCATGGACCCGCGCTTGAGCCTCTTGTATTGGTTTTCGTGAGGTT
TGGCAGAAAGGAGATGTAGTATATGTGATACACCTCACCGGAGCTTCTTA
CCACCACCACACCGACGTAGCGTACCGCCCGCGACATCTTCGGCATGTGG
CCATTGTCAAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACCACGGAG
CGCTGCCACGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGTGGTCAT
CCTCGTGGTCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTCGGATTT
GTCCTCCTCACCAGTGCCTGCTGTCACGCTATCCAGTACAACACTCTTTC
CACTAAAGGACTACAACGATGTTCACCATCATCCCAGGTATCGACTGCTT
TCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTCGGTCCT
ATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTGCATTAT
TACCATGAAAGGCCTCCCCGATCCACAACATACCATCAAACGTATCTGCG
CCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCAAGAAGTTCGAA
GCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTCTGGACA
GTGTCAATTAAGAGACGCGTATTGTCGCGTGCGTGATGGGGAGCTATGGA
TTCATAATCTGTTCATTGGACCACACAAGACGACGGGAAAATATTTCCAG
CATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGAGGTCTT
GGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCATTGTACCATTGA
AGATTTATTTGACAGCAACGCACAGGTACGTACCCAAAAAAAAGAAAAGA
GGGTAAGATGGCAGGCAGTTTCGATTGCTAAGACGTGCGCTTTTTGTTTG
TCTCATCTCTCTTGTCTCTTTCTTCGCCTTCCTCCTTCCTTGTTATGTTA
TTCCAGGATAAAGGTGGAAGTGGCCATAGGACGGGGCATCAAGAAATACG
ACAAGCGTGAGGCGGCAAAGGAACGGGAGATCAAGCGGGGCTTCGAGAAG
ATTATGAAAAGTTTCTAACTTTGCTTGTTTTTGGAATGAAAAGGACCGGA
AAATAATCAAAAAATGAATCAAATACGCACATTAATTAAATGAGCATGGT
CACCCAGCCTTACGGTCAGCTAGGAAAAAA
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Coding sequence (CDS) from alignment at chr1:1038894..1040273+

>NO01G03890.1 ID=NO01G03890.1|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr1:1038894..1040273+ (Nannochloropsis oceanica)
ATGTGGCCATTGTCAAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACC
ACGGAGCGCTGCCACGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGT
GGTCATCCTCGTGGTCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTC
GGATTTGTCCTCCTCACCAGTGCCTGCTGTCACGCTATCCAGTACAACAC
TCTTTCCACTAAAGGACTACAACGATGTTCACCATCATCCCAGGTATCGA
CTGCTTTCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTC
GGTCCTATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTG
CATTATTACCATGAAAGGCCTCCCCGATCCACAACATACCATCAAACGTA
TCTGCGCCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCAAGAAG
TTCGAAGCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTC
TGGACAGTGTCAATTAAGAGACGCGTATTGTCGCGTGCGTGATGGGGAGC
TATGGATTCATAATCTGTTCATTGGACCACACAAGACGACGGGAAAATAT
TTCCAGCATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGA
GGTCTTGGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCATTGTAC
CATTGAAGATTTATTTGACAGCAACGCACAGGATAAAGGTGGAAGTGGCC
ATAGGACGGGGCATCAAGAAATACGACAAGCGTGAGGCGGCAAAGGAACG
GGAGATCAAGCGGGGCTTCGAGAAGATTATGAAAAGTTTCTAA
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Synonyms
Publications