NO01G03720.1, NO01G03720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03720.1
Unique NameNO01G03720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1354
Alignment locationchr1:996627..998416 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:996627..998416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03720.1 vs.
Match: EWM29300.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 391.7 bits (1005), Expect = 1.600e-105
Identity = 194/232 (83.62%), Postives = 211/232 (90.95%), Query Frame = 0 
Query:    1 MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEPGKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAEEGLLSAGGGGGRGGRL 233
            MRGCW +AS +P+LL+ CLA+S +AQ Y Q QYQQQRPR EFRDIGRK+ G+FWGMMKTGAVGA+ASWSFGQLYYRWQAKRLK+AHQKKSDKLIASYQQRK AIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRK+AEFKLPDANNDNKISRAEF+AYLRSYFAAHPELA+VEYPSFDDFDLDGSGLVSFAEWK+FIE+LEK Q  EE L     GG +G R+
Sbjct:    1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERL----AGGAKGSRM 228
The following BLAST results are available for this feature:
BLAST of NO01G03720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29300.11.600e-10583.62EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03720NO01G03720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03720.1NO01G03720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03720.1.cds1NO01G03720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03720.1.cds2NO01G03720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03720.1 ID=NO01G03720.1|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp
CAGCCCGTCTCACAATAGATTTGGAGAGCAAGCCCGGGGGCACCTTCATC
AATAGGAATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCC
TGCTCCTCTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCA
CAGTACCAGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAA
AGAGCCCGGCAAATTTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAG
TCGCCAGCTGGAGCTTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGC
CTCAAGAAGGCCCACCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCA
ACAACGGAAAGGAGCGATTGTTGCCCAGTTTGGCGAGGCGTACCAAGCAC
TGGAAGTAAATGCTGACTATGTTGATTCCTTAATTGCGCAACTAGAAGGA
ATTTTGCAGCACCCCGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTT
TAAATTACCCGATGCGAATAACGACAATAAAATCTCACGAGCAGAGTTTG
ATGCGTATCTGAGGTCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTG
GAGTATCCTAGTTTTGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTC
GTTTGCAGAGTGGAAGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGG
CAGAGGAAGGCCTGCTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGG
CTCTAGGTTTGTGGGATAGGATGTGGATGGGAGGAAGGGGTAGGTTGGTT
AAGAGAGTCTGCGTGTCTAGCAGGGATATTGGCGGAGGGAATGGAAGAAA
GAAACGACAGGGGGAGAGGAGACTCACGTGACACGACAAGCCGGTATTTT
TATAGCAGTAGCGAAAGCTAATCAAAGCGATGGAAAGACTTGGTTTGGTG
CACCTATTTGACGTTTCCATAGATGTCCAATCTTCCTTTTGAAGTTCGTC
CAAAAAACAGCCGCCTGAGGAGGAAAGGAGGGAGGAAGGGCCGGAGAGGA
CAGGACAAGTGCATACGTGTTAAGAGGGAGGCGGGAGTATATATGGTAAG
AGGACAGGCCCTTTGCTAAGCTTTCATACAGGAATGAAAACTTGTCGGCC
TGTAAAAGGCTGCGCGATGATCAGGCGAGCGCTTTCTTTTTCTCCTTCTC
CCTCCGGAAGTTGCCTTAGAACTCATACCCCACCCCAGCGCCCCTCCCTC
CCCTACTTTTTTTCTTCCCTCCCCCCCTTGGAAGAGCACGCCCATGGCCT
GGAGGGGGATTGATGAGAAGCAAAATAAGGAAAAAAGAAAACACGACATT
AAAC
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protein sequence of NO01G03720.1

>NO01G03720.1-protein ID=NO01G03720.1-protein|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEP
GKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQR
KGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKL
PDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFA
EWKKFIEDLEKSQQAEEGLLSAGGGGGRGGRL*
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mRNA from alignment at chr1:996627..998416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03720.1 ID=NO01G03720.1|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at chr1:996627..998416+ (Nannochloropsis oceanica)
CAGCCCGTCTCACAATAGATTTGGAGAGCAAGCCCGGGGGCACCTTCATC
AATAGGAATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCC
TGCTCCTCTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCA
CAGTACCAGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAA
AGAGCCCGGCAAGTACGTGTTGGACGGGAAGGGATGTTGAAGGCGCTGGG
AGCGTGGGGGAATGGGTGAAATTTGGTGTTCTAATGCGTCTCTTGTACTT
GAAAAAAAGCTCTTCAAATAGCCCTCTGGGATTGTTTTGCAATCCTCCTC
ATCTTTTGAATCTTGTGTCCTTTCAGCCTCGAACCGGCAGTCTCGTGACG
CGGAGGGCATGTATGTGTGCGGGACATGGCCCCTTTTCCTTTCCTTTTCC
CCTTTACCTTTGCGTCAGTATCTCCTGTGTATAAAGCGGGGTCGGTTTCT
TAAACTTCTAGTAGTCAGGGCATTTTTGGTCCGGAGAGATTTGATCACTA
CAGTACCCTGTTCCTGTGGAGTCATGCACACACACGCAGACGTCCCAATC
CTTCCTCCCTCTCTCCCGCCCTCTTTTCCTTCTTTCCCCTCTCCATAGAT
TTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAGCTGGAGC
TTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGAAGGCCCA
CCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGGAAAGGAG
CGATTGTTGCCCAGTTTGGCGAGGCGTACCAAGCACTGGAAGTAAATGCT
GACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGCAGCACCC
CGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTACCCGATG
CGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTATCTGAGG
TCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATCCTAGTTT
TGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCAGAGTGGA
AGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGAAGGCCTG
CTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAGGTTTGTGG
GATAGGATGTGGATGGGAGGAAGGGGTAGGTTGGTTAAGAGAGTCTGCGT
GTCTAGCAGGGATATTGGCGGAGGGAATGGAAGAAAGAAACGACAGGGGG
AGAGGAGACTCACGTGACACGACAAGCCGGTATTTTTATAGCAGTAGCGA
AAGCTAATCAAAGCGATGGAAAGACTTGGTTTGGTGCACCTATTTGACGT
TTCCATAGATGTCCAATCTTCCTTTTGAAGTTCGTCCAAAAAACAGCCGC
CTGAGGAGGAAAGGAGGGAGGAAGGGCCGGAGAGGACAGGACAAGTGCAT
ACGTGTTAAGAGGGAGGCGGGAGTATATATGGTAAGAGGACAGGCCCTTT
GCTAAGCTTTCATACAGGAATGAAAACTTGTCGGCCTGTAAAAGGCTGCG
CGATGATCAGGCGAGCGCTTTCTTTTTCTCCTTCTCCCTCCGGAAGTTGC
CTTAGAACTCATACCCCACCCCAGCGCCCCTCCCTCCCCTACTTTTTTTC
TTCCCTCCCCCCCTTGGAAGAGCACGCCCATGGCCTGGAGGGGGATTGAT
GAGAAGCAAAATAAGGAAAAAAGAAAACACGACATTAAAC
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Coding sequence (CDS) from alignment at chr1:996627..998416+

>NO01G03720.1 ID=NO01G03720.1|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr1:996627..998416+ (Nannochloropsis oceanica)
ATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCCTGCTCCT
CTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCACAGTACC
AGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAAAGAGCCC
GGCAAATTTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAG
CTGGAGCTTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGA
AGGCCCACCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGG
AAAGGAGCGATTGTTGCCCAGTTTGGCGAGGCGTACCAAGCACTGGAAGT
AAATGCTGACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGC
AGCACCCCGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTA
CCCGATGCGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTA
TCTGAGGTCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATC
CTAGTTTTGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCA
GAGTGGAAGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGA
AGGCCTGCTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAG
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Synonyms
Publications