NO01G03670.1, NO01G03670.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G03670.1
Unique Name	NO01G03670.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1686
Alignment location	chr1:984832..986517 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:984832..986517 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G03670.1 vs.
Match: EWM29309.1 (putative aarf domain-containing protein kinase 2 [Nannochloropsis gaditana])

HSP 1 Score: 808.9 bits (2088), Expect = 9.800e-231
Identity = 412/561 (73.44%), Postives = 456/561 (81.28%), Query Frame = 0

Query:    3 MRRALT-AAGPRI--IYATTARTSTNSSTRVLLERLQCAVVRLHQQFNALVVVRLFASDVNCLFNRTYKCYEEDWCVPTLSAAAILSVSPATTITTTEASTALQTRRQRWARLWRAFIRGCQVSLVLSPLLATFPFMYVTRSVFPWFRRKWWTCALWSIEALGPCMVKFMQWASTRRDILATEVCDLLEPIQWQTRPHTWAKTLQALATLRCDWEKVLTIDQGNGAMLGSGSVAQVYRATTTVQPGSEEGDPTAPPPAPRVVAVKVIHPGVKRQIEADLELFRLGAWLVEMTGHLQWWSVRDFVEEFAEIMHMQLDLRSEAKALDRFRENFKARTDIVFPEPLWPLVNEFVLVEDYVGGVPISQILKDPAWPVAEKKAIARSGLDAFLKMVFLDNFVHGDLHPGNIFVHPATSAHKGKPYLTFIDAGIVTELSSQDRRNFVDLFYAIATGKGEAAGRLMIDRARDHACVDPEGFSKGIARIVEEATAGHNLQLGKIRVGFLIQKVLALCIQYKVKLESNFASTLLAIGVLEGVGRSLDPNLDILTAATPIIVKSQYFQSKK 561
            MRR L   AG  +  I A   RT+   +  V+   L     R  Q  +  VV+R  ASD NCL  R+++ Y E+W  P L+AAAILS+SP  +  T EA  A +  R+RW  L++AF+R CQV+LV+SPLLAT P +YVTR +FP  RR WW CALWSIEALGPCMVKFMQWASTRRDILA EVCDLLEPIQWQTRPHTWA+T QAL+TLR DW  VL ID    AM+GSGSVAQVYRATTT +   +  D TAPPPAPRVVAVKVIHPGVKRQIEADLEL R+GAWLVE TGHLQWWSV DFVEEFA+IMH QLDLR EA+ALDRFR NF  RTDI+FP P WPLVNEFVLVEDYV GVPIS ILKDPAWPV EKKAIARSGLDAFLKMVFLDNFVHGDLHPGNIFV   T AHK KP+LTFIDAGIVTEL+ QDRRNFVDLFYAIATG+GEAAGRLMI+R+R H C DPEGF +GI+RIVEEATAG +L+LGKIRVGFLIQKVLALCIQYKVKLESNFAS LLAIGVLEGVGRSLDP LDIL AATP+I+KS+YFQ+KK
Sbjct:    1 MRRTLCPGAGQSLGGIRAAVTRTNIICNLHVISNEL-----RRQQHQHITVVMRFLASDANCLLKRSFQGYNEEWRPPPLAAAAILSLSPTASNATNEAQMADKPGRRRWMHLFKAFLRACQVTLVMSPLLATLPIVYVTRHIFPRLRRGWWACALWSIEALGPCMVKFMQWASTRRDILAPEVCDLLEPIQWQTRPHTWAQTKQALSTLRADWADVLCIDTDKSAMVGSGSVAQVYRATTTARLADDARDATAPPPAPRVVAVKVIHPGVKRQIEADLELLRIGAWLVEATGHLQWWSVCDFVEEFAQIMHKQLDLRCEAEALDRFRANFAGRTDIMFPRPSWPLVNEFVLVEDYVSGVPISNILKDPAWPVQEKKAIARSGLDAFLKMVFLDNFVHGDLHPGNIFVRHDTEAHKAKPHLTFIDAGIVTELTQQDRRNFVDLFYAIATGQGEAAGRLMIERSRRHECQDPEGFCRGISRIVEEATAGQHLRLGKIRVGFLIQKVLALCIQYKVKLESNFASILLAIGVLEGVGRSLDPELDILAAATPVILKSRYFQTKK 556

The following BLAST results are available for this feature:

BLAST of NO01G03670.1 vs.

BLAST of NO01G03670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29309.1	9.800e-231	73.44	putative aarf domain-containing protein kinase 2 [...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G03670	NO01G03670	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03670.1	NO01G03670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03670.1.cds1	NO01G03670.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:984832..986517-
coding sequence from alignment at chr1:984832..986517-

mRNA sequence

>NO01G03670.1 ID=NO01G03670.1|Name=NO01G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
ATGGCCATGCGGAGGGCCTTGACTGCCGCGGGGCCTCGAATCATATATGC
TACGACTGCTCGTACTAGCACTAATTCCAGTACCCGGGTCTTGCTGGAGC
GCCTGCAGTGCGCTGTGGTCCGCCTCCACCAGCAATTTAATGCCCTGGTG
GTCGTCCGGCTATTCGCTAGTGATGTCAACTGCTTGTTTAATCGCACGTA
CAAGTGCTACGAGGAGGACTGGTGTGTGCCCACTTTGTCCGCTGCGGCTA
TTCTAAGCGTGAGTCCCGCGACCACCATAACAACGACAGAAGCCTCGACC
GCTCTACAAACTCGGCGCCAACGATGGGCACGCTTGTGGCGTGCCTTCAT
TCGAGGCTGCCAAGTGAGTCTGGTCCTGAGTCCGCTTCTGGCGACTTTCC
CATTTATGTACGTGACCCGCAGCGTCTTTCCCTGGTTCCGCCGAAAATGG
TGGACCTGCGCGCTGTGGTCCATCGAAGCGCTCGGGCCATGTATGGTCAA
GTTTATGCAATGGGCTAGCACCCGCCGCGATATCTTGGCAACTGAAGTCT
GTGACTTGCTGGAGCCCATCCAATGGCAGACGCGGCCGCATACCTGGGCA
AAGACCTTGCAAGCCCTTGCCACCCTCCGCTGTGATTGGGAGAAGGTCCT
TACCATCGACCAAGGCAATGGTGCGATGCTTGGTTCGGGCTCAGTGGCAC
AGGTATATCGGGCAACCACCACAGTACAACCTGGAAGTGAGGAAGGGGAT
CCTACTGCTCCTCCTCCCGCTCCTCGAGTGGTGGCAGTCAAGGTGATCCA
TCCGGGAGTCAAGCGACAGATTGAGGCGGATTTGGAATTGTTCAGGCTGG
GGGCTTGGTTGGTGGAAATGACAGGGCATTTGCAATGGTGGAGCGTCAGG
GATTTCGTAGAGGAATTTGCGGAGATAATGCATATGCAATTGGATTTGAG
GTCGGAAGCAAAGGCCTTGGATCGGTTCAGGGAGAATTTCAAAGCAAGGA
CGGATATCGTCTTCCCGGAGCCATTATGGCCATTAGTGAATGAATTCGTC
TTGGTAGAAGACTATGTAGGTGGGGTGCCCATTTCTCAGATTTTGAAGGA
TCCCGCGTGGCCCGTCGCGGAAAAAAAGGCCATTGCCCGGTCAGGACTCG
ATGCTTTCCTCAAGATGGTTTTTTTGGATAATTTTGTCCATGGAGACTTG
CACCCGGGGAATATTTTCGTCCACCCTGCGACGTCTGCGCATAAAGGGAA
GCCATATTTGACTTTTATTGATGCGGGAATCGTGACTGAGCTTAGCTCGC
AAGATCGTCGTAATTTTGTGGATCTGTTTTATGCCATTGCCACGGGGAAG
GGGGAGGCAGCGGGACGACTGATGATTGATCGGGCGAGGGACCACGCGTG
CGTAGACCCTGAGGGGTTTTCTAAGGGGATTGCACGGATTGTGGAGGAGG
CGACGGCAGGGCACAATCTGCAGTTGGGTAAGATACGGGTAGGATTTCTG
ATCCAGAAAGTTTTGGCGTTATGTATTCAGTATAAGGTCAAGTTGGAGAG
TAATTTCGCGTCAACACTTTTAGCGATTGGGGTATTGGAGGGAGTAGGGC
GAAGTCTGGACCCCAATCTGGATATTCTTACGGCGGCTACTCCGATAATT
GTGAAGAGTCAGTACTTTCAGAGTAAGAAGGCATAA

protein sequence of NO01G03670.1

>NO01G03670.1-protein ID=NO01G03670.1-protein|Name=NO01G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MAMRRALTAAGPRIIYATTARTSTNSSTRVLLERLQCAVVRLHQQFNALV
VVRLFASDVNCLFNRTYKCYEEDWCVPTLSAAAILSVSPATTITTTEAST
ALQTRRQRWARLWRAFIRGCQVSLVLSPLLATFPFMYVTRSVFPWFRRKW
WTCALWSIEALGPCMVKFMQWASTRRDILATEVCDLLEPIQWQTRPHTWA
KTLQALATLRCDWEKVLTIDQGNGAMLGSGSVAQVYRATTTVQPGSEEGD
PTAPPPAPRVVAVKVIHPGVKRQIEADLELFRLGAWLVEMTGHLQWWSVR
DFVEEFAEIMHMQLDLRSEAKALDRFRENFKARTDIVFPEPLWPLVNEFV
LVEDYVGGVPISQILKDPAWPVAEKKAIARSGLDAFLKMVFLDNFVHGDL
HPGNIFVHPATSAHKGKPYLTFIDAGIVTELSSQDRRNFVDLFYAIATGK
GEAAGRLMIDRARDHACVDPEGFSKGIARIVEEATAGHNLQLGKIRVGFL
IQKVLALCIQYKVKLESNFASTLLAIGVLEGVGRSLDPNLDILTAATPII
VKSQYFQSKKA*

mRNA from alignment at chr1:984832..986517-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G03670.1 ID=NO01G03670.1|Name=NO01G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp|location=Sequence derived from alignment at chr1:984832..986517- (Nannochloropsis oceanica)
ATGGCCATGCGGAGGGCCTTGACTGCCGCGGGGCCTCGAATCATATATGC
TACGACTGCTCGTACTAGCACTAATTCCAGTACCCGGGTCTTGCTGGAGC
GCCTGCAGTGCGCTGTGGTCCGCCTCCACCAGCAATTTAATGCCCTGGTG
GTCGTCCGGCTATTCGCTAGTGATGTCAACTGCTTGTTTAATCGCACGTA
CAAGTGCTACGAGGAGGACTGGTGTGTGCCCACTTTGTCCGCTGCGGCTA
TTCTAAGCGTGAGTCCCGCGACCACCATAACAACGACAGAAGCCTCGACC
GCTCTACAAACTCGGCGCCAACGATGGGCACGCTTGTGGCGTGCCTTCAT
TCGAGGCTGCCAAGTGAGTCTGGTCCTGAGTCCGCTTCTGGCGACTTTCC
CATTTATGTACGTGACCCGCAGCGTCTTTCCCTGGTTCCGCCGAAAATGG
TGGACCTGCGCGCTGTGGTCCATCGAAGCGCTCGGGCCATGTATGGTCAA
GTTTATGCAATGGGCTAGCACCCGCCGCGATATCTTGGCAACTGAAGTCT
GTGACTTGCTGGAGCCCATCCAATGGCAGACGCGGCCGCATACCTGGGCA
AAGACCTTGCAAGCCCTTGCCACCCTCCGCTGTGATTGGGAGAAGGTCCT
TACCATCGACCAAGGCAATGGTGCGATGCTTGGTTCGGGCTCAGTGGCAC
AGGTATATCGGGCAACCACCACAGTACAACCTGGAAGTGAGGAAGGGGAT
CCTACTGCTCCTCCTCCCGCTCCTCGAGTGGTGGCAGTCAAGGTGATCCA
TCCGGGAGTCAAGCGACAGATTGAGGCGGATTTGGAATTGTTCAGGCTGG
GGGCTTGGTTGGTGGAAATGACAGGGCATTTGCAATGGTGGAGCGTCAGG
GATTTCGTAGAGGAATTTGCGGAGATAATGCATATGCAATTGGATTTGAG
GTCGGAAGCAAAGGCCTTGGATCGGTTCAGGGAGAATTTCAAAGCAAGGA
CGGATATCGTCTTCCCGGAGCCATTATGGCCATTAGTGAATGAATTCGTC
TTGGTAGAAGACTATGTAGGTGGGGTGCCCATTTCTCAGATTTTGAAGGA
TCCCGCGTGGCCCGTCGCGGAAAAAAAGGCCATTGCCCGGTCAGGACTCG
ATGCTTTCCTCAAGATGGTTTTTTTGGATAATTTTGTCCATGGAGACTTG
CACCCGGGGAATATTTTCGTCCACCCTGCGACGTCTGCGCATAAAGGGAA
GCCATATTTGACTTTTATTGATGCGGGAATCGTGACTGAGCTTAGCTCGC
AAGATCGTCGTAATTTTGTGGATCTGTTTTATGCCATTGCCACGGGGAAG
GGGGAGGCAGCGGGACGACTGATGATTGATCGGGCGAGGGACCACGCGTG
CGTAGACCCTGAGGGGTTTTCTAAGGGGATTGCACGGATTGTGGAGGAGG
CGACGGCAGGGCACAATCTGCAGTTGGGTAAGATACGGGTAGGATTTCTG
ATCCAGAAAGTTTTGGCGTTATGTATTCAGTATAAGGTCAAGTTGGAGAG
TAATTTCGCGTCAACACTTTTAGCGATTGGGGTATTGGAGGGAGTAGGGC
GAAGTCTGGACCCCAATCTGGATATTCTTACGGCGGCTACTCCGATAATT
GTGAAGAGTCAGTACTTTCAGAGTAAGAAGGCATAA

Coding sequence (CDS) from alignment at chr1:984832..986517-

>NO01G03670.1 ID=NO01G03670.1|Name=NO01G03670.1|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at chr1:984832..986517- (Nannochloropsis oceanica)
ATGGCCATGCGGAGGGCCTTGACTGCCGCGGGGCCTCGAATCATATATGC
TACGACTGCTCGTACTAGCACTAATTCCAGTACCCGGGTCTTGCTGGAGC
GCCTGCAGTGCGCTGTGGTCCGCCTCCACCAGCAATTTAATGCCCTGGTG
GTCGTCCGGCTATTCGCTAGTGATGTCAACTGCTTGTTTAATCGCACGTA
CAAGTGCTACGAGGAGGACTGGTGTGTGCCCACTTTGTCCGCTGCGGCTA
TTCTAAGCGTGAGTCCCGCGACCACCATAACAACGACAGAAGCCTCGACC
GCTCTACAAACTCGGCGCCAACGATGGGCACGCTTGTGGCGTGCCTTCAT
TCGAGGCTGCCAAGTGAGTCTGGTCCTGAGTCCGCTTCTGGCGACTTTCC
CATTTATGTACGTGACCCGCAGCGTCTTTCCCTGGTTCCGCCGAAAATGG
TGGACCTGCGCGCTGTGGTCCATCGAAGCGCTCGGGCCATGTATGGTCAA
GTTTATGCAATGGGCTAGCACCCGCCGCGATATCTTGGCAACTGAAGTCT
GTGACTTGCTGGAGCCCATCCAATGGCAGACGCGGCCGCATACCTGGGCA
AAGACCTTGCAAGCCCTTGCCACCCTCCGCTGTGATTGGGAGAAGGTCCT
TACCATCGACCAAGGCAATGGTGCGATGCTTGGTTCGGGCTCAGTGGCAC
AGGTATATCGGGCAACCACCACAGTACAACCTGGAAGTGAGGAAGGGGAT
CCTACTGCTCCTCCTCCCGCTCCTCGAGTGGTGGCAGTCAAGGTGATCCA
TCCGGGAGTCAAGCGACAGATTGAGGCGGATTTGGAATTGTTCAGGCTGG
GGGCTTGGTTGGTGGAAATGACAGGGCATTTGCAATGGTGGAGCGTCAGG
GATTTCGTAGAGGAATTTGCGGAGATAATGCATATGCAATTGGATTTGAG
GTCGGAAGCAAAGGCCTTGGATCGGTTCAGGGAGAATTTCAAAGCAAGGA
CGGATATCGTCTTCCCGGAGCCATTATGGCCATTAGTGAATGAATTCGTC
TTGGTAGAAGACTATGTAGGTGGGGTGCCCATTTCTCAGATTTTGAAGGA
TCCCGCGTGGCCCGTCGCGGAAAAAAAGGCCATTGCCCGGTCAGGACTCG
ATGCTTTCCTCAAGATGGTTTTTTTGGATAATTTTGTCCATGGAGACTTG
CACCCGGGGAATATTTTCGTCCACCCTGCGACGTCTGCGCATAAAGGGAA
GCCATATTTGACTTTTATTGATGCGGGAATCGTGACTGAGCTTAGCTCGC
AAGATCGTCGTAATTTTGTGGATCTGTTTTATGCCATTGCCACGGGGAAG
GGGGAGGCAGCGGGACGACTGATGATTGATCGGGCGAGGGACCACGCGTG
CGTAGACCCTGAGGGGTTTTCTAAGGGGATTGCACGGATTGTGGAGGAGG
CGACGGCAGGGCACAATCTGCAGTTGGGTAAGATACGGGTAGGATTTCTG
ATCCAGAAAGTTTTGGCGTTATGTATTCAGTATAAGGTCAAGTTGGAGAG
TAATTTCGCGTCAACACTTTTAGCGATTGGGGTATTGGAGGGAGTAGGGC
GAAGTCTGGACCCCAATCTGGATATTCTTACGGCGGCTACTCCGATAATT
GTGAAGAGTCAGTACTTTCAGAGTAAGAAGGCATAA

Synonyms

Publications