NO01G03500.1, NO01G03500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03500.1
Unique NameNO01G03500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1746
Alignment locationchr1:913167..915461 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:913167..915461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03500.1 vs.
Match: EWM29257.1 (plastidic atp adp transporter [Nannochloropsis gaditana])

HSP 1 Score: 991.5 bits (2562), Expect = 1.100e-285
Identity = 512/579 (88.43%), Postives = 540/579 (93.26%), Query Frame = 0 
Query:    1 MSRIILTACLLAGCVQGFQSSGFRPSFALSRKSYALIAPSKALPDSLRQRHGGASATGLPRSLPRVSSTAASIVENSGAVPEKTTWWQRFKAQLPTKVERKKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPAALLITIVYSKLCNAMPMAKVFYTLITPFLAFFASFAFLIYPNRNILHPNAAADHLQKILPASFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANEVTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRKGLPDGVDKWGVSLKLLMGAVVALGTVMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSATNMTLKESAQYLFKSKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSAFMGNFSTATGCVTLIMMLLGRTIFQKYGWGVAALITPVMLLATGVAFFSLIIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYIPLDAEQKTKGKAAVDVIGNPLGKSGGSFIQQILILGLGSLSASTPYLAGIIFLIVGAWINAANSLSKQFKEKMEANPNA 580
            M+RI L  C+LAG VQGFQSS FRP++AL+RKS AL+APS AL +  R+RH       LPRSLPR+ S A+ +VE   +  +K + WQRFKAQ+PTKVERKKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPAAL+ITIVYSKLCN +PM+KVFYTLITPFLAFFASFAFLIYPNRN LHPNAAAD+LQ +LP+SFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANEVTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRK LPDGVDKWGVSLKLLMGAVV+LG VMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSAT+M+LKESAQYLF SKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSAFMGNFSTATGCVTLIMMLLGR IFQKYGWGVAALITP+MLL+TGVAFFSLIIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYIPLDAEQKTKGKAA+DVIGNPLGKSGGSFIQQILIL LGSLSASTPYLAGIIFLIVGAWI AA SLSKQFKEKM  NP+A
Sbjct:    1 MTRIFLALCILAGSVQGFQSSVFRPNYALARKSCALVAPSTALTEGSRRRHAA-----LPRSLPRIFSAASPVVEGGASPEKKASMWQRFKAQMPTKVERKKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPAALMITIVYSKLCNVLPMSKVFYTLITPFLAFFASFAFLIYPNRNFLHPNAAADYLQTVLPSSFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANEVTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRKQLPDGVDKWGVSLKLLMGAVVSLGAVMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSATSMSLKESAQYLFNSKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSAFMGNFSTATGCVTLIMMLLGRGIFQKYGWGVAALITPIMLLSTGVAFFSLIIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYIPLDAEQKTKGKAAIDVIGNPLGKSGGSFIQQILILILGSLSASTPYLAGIIFLIVGAWIKAAASLSKQFKEKMAQNPDA 574
The following BLAST results are available for this feature:
BLAST of NO01G03500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29257.11.100e-28588.43plastidic atp adp transporter [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03500NO01G03500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03500.1NO01G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03500.1.cds1NO01G03500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03500.1.cds2NO01G03500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03500.1 ID=NO01G03500.1|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp
ATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGG
CTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGAAAAGCT
ATGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGT
CATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTC
CTCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGA
CCACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGC
AAGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTA
CACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGT
CCGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCC
GCGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCAT
GGCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCT
CCTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCC
GCCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGAT
CTCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGC
TGTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAG
GTGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGG
GGCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTA
GCATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTG
AAGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGC
GTACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCG
CGGAAAAGCAAAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTG
AAGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGC
TACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGT
GGAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCT
TTCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGAT
GCTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGT
TAATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTG
ATTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGAC
GCCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCGA
AGTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATT
CCCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCAT
CGGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGA
TCTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATT
ATCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAA
GCAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAA
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protein sequence of NO01G03500.1

>NO01G03500.1-protein ID=NO01G03500.1-protein|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MSRIILTACLLAGCVQGFQSSGFRPSFALSRKSYALIAPSKALPDSLRQR
HGGASATGLPRSLPRVSSTAASIVENSGAVPEKTTWWQRFKAQLPTKVER
KKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPA
ALLITIVYSKLCNAMPMAKVFYTLITPFLAFFASFAFLIYPNRNILHPNA
AADHLQKILPASFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANE
VTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRKGLPDGVDKWGVSL
KLLMGAVVALGTVMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSATNMTL
KESAQYLFKSKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSA
FMGNFSTATGCVTLIMMLLGRTIFQKYGWGVAALITPVMLLATGVAFFSL
IIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYI
PLDAEQKTKGKAAVDVIGNPLGKSGGSFIQQILILGLGSLSASTPYLAGI
IFLIVGAWINAANSLSKQFKEKMEANPNAEH*
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mRNA from alignment at chr1:913167..915461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03500.1 ID=NO01G03500.1|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2295bp|location=Sequence derived from alignment at chr1:913167..915461+ (Nannochloropsis oceanica)
ATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGG
CTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGTAAGGGC
ATCCTGGAAGACTGTGATGTTAGGAAAGGATAGGTGGGCGCAGGACCACG
CAAGAGCTAGAACAAACTTGCCCCTCGGCCTTCGTCATGTTGAAGTGCTT
GCGGGCGGCGGAGGAGAGTGAGCTTTCGATAGCATAAAGACCAGGGCACA
CTGCGCGTAGTCACTCTAAGATGTGCACCAGGGGAATGCAAAGAACTTAA
TATGTATCGAGTGGCATGCGGATATGTGGGCGTAGACCGAGTGCTCAAAA
CAGCATCGAGCATTCAGAGCAGCGCTGGGCCCTCCGCGCATTACGTCTCT
GTCTACTTGGAGTAACCCACATATACCGTCTCAAACCAGACCTTCTTTCA
CTGCACAACCTTTTTCGACTAGATAAGGATATGAATAAGAACGGCATAAC
ACTTTATCATCATTCCAGTCCTACAGTATCAGACTACATCACCTCCCCCT
CCTGACCCCTCTGCATGTCCTCCCATCTCACTAACCCCAACCTCGCTCCT
CCCCTCATGTAACTCCCCCCCCAAAAAAACGACAACGACAGGAAAAGCTA
TGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGTC
ATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTCC
TCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGAC
CACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGCA
AGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTAC
ACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGTC
CGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCCG
CGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCATG
GCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCTC
CTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCCG
CCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGATC
TCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGCT
GTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAGG
TGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGGG
GCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTAG
CATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTGA
AGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGCG
TACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCGC
GGAAAAGCAAAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTGA
AGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGCT
ACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGTG
GAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCTT
TCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGATG
CTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGTT
AATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTGA
TTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGACG
CCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCGAA
GTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATTC
CCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCATC
GGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGAT
CTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATTA
TCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAAG
CAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAA
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Coding sequence (CDS) from alignment at chr1:913167..915461+

>NO01G03500.1 ID=NO01G03500.1|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at chr1:913167..915461+ (Nannochloropsis oceanica)
ATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGG
CTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGAAAAGCT
ATGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGT
CATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTC
CTCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGA
CCACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGC
AAGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTA
CACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGT
CCGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCC
GCGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCAT
GGCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCT
CCTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCC
GCCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGAT
CTCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGC
TGTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAG
GTGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGG
GGCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTA
GCATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTG
AAGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGC
GTACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCG
CGGAAAAGCAAAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTG
AAGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGC
TACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGT
GGAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCT
TTCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGAT
GCTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGT
TAATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTG
ATTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGAC
GCCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCGA
AGTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATT
CCCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCAT
CGGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGA
TCTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATT
ATCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAA
GCAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAA
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Synonyms
Publications